Literature DB >> 21577872

(2E)-2-Hydroxy-imino-N'-[(E)-2-pyridyl-methyl-ene]propanohydrazide.

Yurii S Moroz, Valentina A Kalibabchuk, Elżbieta Gumienna-Kontecka, Viktor V Skopenko, Svetlana V Pavlova.   

Abstract

In the title compound, C(9)H(10)N(4)O(2), the n class="Chemical">pyridine ring is twisted by 16.5 (1)° from the mean plane defined by the remaining non-H atoms. An intra-molecular N-H⋯N inter-action is present. In the crystal, inter-molecular O-H⋯N and N-H⋯O hydrogen bonds link mol-ecules into layers parallel to the bc plane. The crystal packing exhibits π-π inter-actions indicated by the short distance of 3.649 (1) Å between the centroids of the pyridine rings of neighbouring mol-ecules.

Entities:  

Year:  2009        PMID: 21577872      PMCID: PMC2970200          DOI: 10.1107/S1600536809034400

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structures of related oxime derivatives, see: Mokhir et al. (2002 ▶); Moroz et al. (2009 ▶). For 2-hydroxy­imino­propann class="Chemical">amide and amide derivatives of 2-hydroxy­imino­propanoic acid, see: Onindo et al. (1995 ▶); Duda et al. (1997 ▶); Sliva et al. (1997a ▶). For the preparation and characterization of 3d-metal complexes with the structural analog of the title compound, see: Moroz et al. (2008a ▶,b ▶). For the synthesis of 2-(hydroxy­imino)propane­hydrazide, see Fritsky et al. (1998 ▶).

Experimental

Crystal data

C9H10N4O2 M = 206.21 Monoclinic, a = 10.274 (4) Å b = 9.717 (4) Å c = 10.136 (4) Å β = 109.28 (4)° V = 955.2 (7) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 100 K 0.4 × 0.4 × 0.3 mm

Data collection

Kuma KM-4-CCD diffractometer Absorption correction: none 10648 measured reflections 2680 independent reflections 2449 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.106 S = 1.08 2680 reflections 176 parameters All H-atom parameters refined Δρmax = 0.46 e Å−3 Δρmin = −0.18 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2006 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2006 ▶); data n class="Disease">reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809034400/cv2608sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809034400/cv2608Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H10N4O2F(000) = 432
Mr = 206.21Dx = 1.434 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.7107 Å
Hall symbol: -P 2ybcCell parameters from 11569 reflections
a = 10.274 (4) Åθ = 3–37°
b = 9.717 (4) ŵ = 0.11 mm1
c = 10.136 (4) ÅT = 100 K
β = 109.28 (4)°Block, white
V = 955.2 (7) Å30.4 × 0.4 × 0.3 mm
Z = 4
Kuma KM-4-CCD diffractometer2449 reflections with I > 2σ(I)
Radiation source: Enhance (Mo) X-ray SourceRint = 0.023
graphiteθmax = 30.0°, θmin = 3.2°
Detector resolution: 8.3359 pixels mm-1h = −14→13
ω scansk = −13→10
10648 measured reflectionsl = −14→14
2680 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.106All H-atom parameters refined
S = 1.08w = 1/[σ2(Fo2) + (0.0621P)2 + 0.2439P] where P = (Fo2 + 2Fc2)/3
2680 reflections(Δ/σ)max < 0.001
176 parametersΔρmax = 0.46 e Å3
0 restraintsΔρmin = −0.18 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.59592 (7)0.23238 (7)0.23853 (7)0.01751 (17)
O20.24735 (8)0.10483 (8)−0.16272 (8)0.01954 (17)
H210.2245 (17)0.1328 (17)−0.2501 (18)0.032 (4)*
N10.85431 (9)0.66853 (8)−0.05564 (8)0.01561 (18)
N20.70574 (8)0.39826 (8)0.08234 (8)0.01477 (17)
N30.59208 (9)0.31588 (9)0.02612 (9)0.01608 (18)
H310.5529 (16)0.3104 (16)−0.0650 (17)0.030 (4)*
N40.36471 (8)0.18113 (8)−0.09566 (8)0.01500 (17)
C10.95964 (11)0.75821 (10)−0.01987 (11)0.0176 (2)
H10.9570 (16)0.8267 (16)−0.0903 (16)0.029 (4)*
C21.06781 (10)0.75321 (10)0.10549 (10)0.0168 (2)
H21.1433 (15)0.8188 (14)0.1263 (15)0.023 (3)*
C31.06686 (10)0.64989 (10)0.20031 (10)0.0167 (2)
H31.1409 (16)0.6414 (16)0.2873 (16)0.026 (4)*
C40.95703 (10)0.55828 (10)0.16717 (10)0.01493 (19)
H40.9544 (15)0.4838 (15)0.2317 (15)0.024 (3)*
C50.85205 (10)0.57099 (9)0.03849 (9)0.01315 (18)
C60.73225 (10)0.47858 (10)−0.00602 (10)0.01499 (19)
H60.6756 (15)0.4825 (15)−0.1032 (15)0.026 (3)*
C70.54344 (10)0.23721 (9)0.11115 (10)0.01334 (18)
C80.41629 (10)0.15545 (9)0.03573 (10)0.01366 (19)
C90.36358 (11)0.05663 (11)0.11943 (11)0.0188 (2)
H9A0.2794 (19)0.0181 (19)0.0675 (19)0.044 (5)*
H9B0.3462 (17)0.1013 (17)0.1967 (18)0.037 (4)*
H9C0.4325 (17)−0.0149 (17)0.1626 (17)0.035 (4)*
U11U22U33U12U13U23
O10.0173 (3)0.0225 (4)0.0118 (3)−0.0006 (3)0.0036 (3)0.0006 (2)
O20.0176 (4)0.0249 (4)0.0133 (3)−0.0076 (3)0.0014 (3)−0.0023 (3)
N10.0163 (4)0.0174 (4)0.0136 (4)0.0008 (3)0.0055 (3)0.0016 (3)
N20.0133 (4)0.0166 (4)0.0145 (4)−0.0022 (3)0.0046 (3)−0.0024 (3)
N30.0160 (4)0.0202 (4)0.0109 (4)−0.0054 (3)0.0029 (3)−0.0011 (3)
N40.0128 (4)0.0168 (4)0.0146 (4)−0.0022 (3)0.0036 (3)−0.0028 (3)
C10.0192 (5)0.0172 (4)0.0180 (5)−0.0002 (3)0.0084 (4)0.0029 (3)
C20.0155 (4)0.0163 (4)0.0198 (5)−0.0018 (3)0.0076 (4)−0.0022 (3)
C30.0147 (4)0.0188 (4)0.0153 (4)0.0002 (3)0.0034 (3)−0.0017 (3)
C40.0161 (4)0.0153 (4)0.0132 (4)0.0001 (3)0.0046 (3)0.0007 (3)
C50.0139 (4)0.0138 (4)0.0128 (4)0.0006 (3)0.0058 (3)−0.0011 (3)
C60.0147 (4)0.0171 (4)0.0126 (4)−0.0005 (3)0.0038 (3)−0.0014 (3)
C70.0133 (4)0.0139 (4)0.0133 (4)0.0011 (3)0.0050 (3)−0.0004 (3)
C80.0136 (4)0.0139 (4)0.0139 (4)0.0001 (3)0.0051 (3)−0.0010 (3)
C90.0201 (5)0.0190 (4)0.0170 (4)−0.0037 (4)0.0058 (4)0.0024 (3)
O1—C71.2249 (13)C2—H20.972 (14)
O2—N41.3872 (12)C3—C41.3886 (14)
O2—H210.881 (17)C3—H30.959 (15)
N1—C11.3427 (13)C4—C51.3967 (15)
N1—C51.3505 (12)C4—H40.982 (14)
N2—C61.2832 (13)C5—C61.4691 (14)
N2—N31.3746 (12)C6—H60.965 (14)
N3—C71.3643 (12)C7—C81.5042 (14)
N3—H310.879 (16)C8—C91.4962 (13)
N4—C81.2848 (14)C9—H9A0.930 (19)
C1—C21.3854 (16)C9—H9B0.962 (17)
C1—H10.970 (15)C9—H9C0.985 (17)
C2—C31.3921 (14)
N4—O2—H21103.1 (11)N1—C5—C4122.25 (9)
C1—N1—C5117.71 (9)N1—C5—C6114.84 (9)
C6—N2—N3114.32 (9)C4—C5—C6122.90 (9)
C7—N3—N2120.18 (8)N2—C6—C5120.45 (9)
C7—N3—H31119.6 (10)N2—C6—H6122.7 (9)
N2—N3—H31120.2 (10)C5—C6—H6116.8 (9)
C8—N4—O2113.47 (8)O1—C7—N3124.18 (9)
N1—C1—C2123.77 (9)O1—C7—C8121.44 (9)
N1—C1—H1115.0 (9)N3—C7—C8114.38 (8)
C2—C1—H1121.2 (9)N4—C8—C9127.58 (9)
C1—C2—C3118.17 (9)N4—C8—C7114.58 (9)
C1—C2—H2121.1 (9)C9—C8—C7117.84 (9)
C3—C2—H2120.7 (9)C8—C9—H9A112.3 (11)
C4—C3—C2119.06 (10)C8—C9—H9B111.8 (10)
C4—C3—H3120.1 (9)H9A—C9—H9B104.7 (15)
C2—C3—H3120.8 (9)C8—C9—H9C111.3 (9)
C3—C4—C5118.98 (9)H9A—C9—H9C111.4 (15)
C3—C4—H4120.7 (8)H9B—C9—H9C104.8 (13)
C5—C4—H4120.3 (8)
C6—N2—N3—C7−172.56 (9)N1—C5—C6—N2−167.65 (9)
C5—N1—C1—C22.31 (14)C4—C5—C6—N213.31 (14)
N1—C1—C2—C3−0.46 (15)N2—N3—C7—O1−1.03 (15)
C1—C2—C3—C4−1.31 (14)N2—N3—C7—C8178.35 (8)
C2—C3—C4—C51.19 (14)O2—N4—C8—C9−0.54 (14)
C1—N1—C5—C4−2.42 (14)O2—N4—C8—C7−179.80 (7)
C1—N1—C5—C6178.54 (8)O1—C7—C8—N4173.25 (9)
C3—C4—C5—N10.71 (14)N3—C7—C8—N4−6.14 (12)
C3—C4—C5—C6179.68 (8)O1—C7—C8—C9−6.08 (13)
N3—N2—C6—C5−178.98 (8)N3—C7—C8—C9174.52 (8)
D—H···AD—HH···AD···AD—H···A
O2—H21···N1i0.881 (17)1.897 (18)2.7667 (17)168.6 (15)
N3—H31···O1ii0.879 (16)2.217 (16)2.9656 (15)142.9 (14)
N3—H31···N40.879 (16)2.240 (16)2.6059 (15)104.7 (12)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H21⋯N1i0.881 (17)1.897 (18)2.7667 (17)168.6 (15)
N3—H31⋯O1ii0.879 (16)2.217 (16)2.9656 (15)142.9 (14)
N3—H31⋯N40.879 (16)2.240 (16)2.6059 (15)104.7 (12)

Symmetry codes: (i) ; (ii) .

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