| Literature DB >> 21577640 |
Yurii S Moroz, Irina S Konovalova, Turganbay S Iskenderov, Svetlana V Pavlova, Oleg V Shishkin.
Abstract
The title compound, C(10)H(12)N(4)O(2), features an intra-molecular N-H⋯N hydrogen bond formed between the imine NH and oxime N atoms. The oxime group and the amide C=O bond are anti to each other. In the crystal, mol-ecules are connected by O-H⋯O hydrogen bonds into supra-molecular zigzag chains along the c axis.Entities:
Year: 2009 PMID: 21577640 PMCID: PMC2969988 DOI: 10.1107/S1600536809033352
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C10H12N4O2 | |
| Monoclinic, | Mo |
| Hall symbol: C -2yc | Cell parameters from 5860 reflections |
| θ = 3.6–32.0° | |
| µ = 0.10 mm−1 | |
| β = 97.47 (2)° | Needles, white |
| 0.15 × 0.10 × 0.05 mm | |
| Oxford Diffraction KM-4/Xcalibur diffractometer with a Sapphire3 detector | 958 independent reflections |
| Radiation source: Enhance (Mo) X-ray Source | 793 reflections with |
| graphite | |
| Detector resolution: 16.1827 pixels mm-1 | θmax = 25.0°, θmin = 3.6° |
| φ scans and ω scans with κ offset | |
| Absorption correction: multi-scan ( | |
| 3899 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max < 0.001 | |
| 958 reflections | Δρmax = 0.13 e Å−3 |
| 155 parameters | Δρmin = −0.16 e Å−3 |
| 2 restraints | Absolute structure: nd |
| Primary atom site location: structure-invariant direct methods |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| N1 | −0.4385 (8) | 0.29326 (15) | 0.1660 (4) | 0.0601 (10) | |
| N2 | −0.0269 (7) | 0.41668 (13) | 0.0900 (3) | 0.0411 (8) | |
| N3 | 0.1840 (7) | 0.45542 (13) | 0.1431 (3) | 0.0418 (8) | |
| N4 | 0.6418 (7) | 0.52027 (13) | 0.2434 (3) | 0.0402 (8) | |
| O1 | 0.1686 (7) | 0.50958 (13) | −0.0301 (3) | 0.0624 (9) | |
| O2 | 0.8544 (6) | 0.55993 (14) | 0.2979 (3) | 0.0559 (8) | |
| C1 | −0.3464 (9) | 0.33542 (16) | 0.0958 (4) | 0.0439 (10) | |
| C2 | −0.4547 (11) | 0.3399 (2) | −0.0272 (4) | 0.0624 (13) | |
| H2 | −0.3891 | 0.3701 | −0.0743 | 0.075* | |
| C3 | −0.6589 (11) | 0.2998 (2) | −0.0793 (5) | 0.0763 (16) | |
| H3 | −0.7310 | 0.3019 | −0.1628 | 0.092* | |
| C4 | −0.7553 (11) | 0.2573 (2) | −0.0090 (5) | 0.0706 (15) | |
| H4 | −0.8962 | 0.2296 | −0.0423 | 0.085* | |
| C5 | −0.6403 (13) | 0.2558 (2) | 0.1128 (6) | 0.0750 (15) | |
| H5 | −0.7085 | 0.2265 | 0.1614 | 0.090* | |
| C6 | −0.1176 (8) | 0.37676 (17) | 0.1582 (3) | 0.0425 (10) | |
| C7 | −0.0053 (11) | 0.3692 (2) | 0.2922 (4) | 0.0607 (13) | |
| H7A | −0.0416 | 0.4044 | 0.3357 | 0.091* | |
| H7B | 0.2082 | 0.3611 | 0.3022 | 0.091* | |
| H7C | −0.1103 | 0.3372 | 0.3246 | 0.091* | |
| C8 | 0.2702 (8) | 0.50043 (16) | 0.0783 (3) | 0.0405 (9) | |
| C9 | 0.4981 (9) | 0.54051 (15) | 0.1430 (3) | 0.0404 (10) | |
| C10 | 0.5493 (13) | 0.59805 (19) | 0.0889 (5) | 0.0755 (16) | |
| H10A | 0.3634 | 0.6119 | 0.0440 | 0.113* | |
| H10B | 0.7001 | 0.5945 | 0.0342 | 0.113* | |
| H10C | 0.6177 | 0.6253 | 0.1534 | 0.113* | |
| H3NA | 0.239 (8) | 0.4565 (15) | 0.222 (4) | 0.035 (10)* | |
| H2OA | 0.932 (11) | 0.5383 (19) | 0.355 (5) | 0.061 (14)* |
| N1 | 0.063 (2) | 0.045 (2) | 0.069 (3) | −0.013 (2) | −0.0028 (19) | 0.0015 (19) |
| N2 | 0.0370 (18) | 0.0396 (16) | 0.0439 (18) | −0.0042 (15) | −0.0056 (14) | −0.0027 (15) |
| N3 | 0.0436 (19) | 0.0436 (19) | 0.0353 (19) | −0.0083 (16) | −0.0062 (15) | −0.0009 (14) |
| N4 | 0.0361 (18) | 0.0403 (17) | 0.0408 (18) | −0.0022 (15) | −0.0078 (14) | −0.0055 (14) |
| O1 | 0.071 (2) | 0.0603 (18) | 0.0478 (17) | −0.0208 (16) | −0.0238 (15) | 0.0105 (14) |
| O2 | 0.0555 (18) | 0.0570 (18) | 0.0478 (17) | −0.0045 (15) | −0.0220 (13) | −0.0013 (14) |
| C1 | 0.036 (2) | 0.041 (2) | 0.054 (2) | 0.0004 (18) | 0.0032 (19) | −0.0047 (18) |
| C2 | 0.068 (3) | 0.071 (3) | 0.046 (2) | −0.025 (3) | 0.002 (2) | −0.007 (2) |
| C3 | 0.072 (4) | 0.089 (4) | 0.063 (3) | −0.026 (3) | −0.007 (3) | −0.020 (3) |
| C4 | 0.051 (3) | 0.058 (3) | 0.100 (4) | −0.020 (2) | 0.000 (3) | −0.028 (3) |
| C5 | 0.078 (4) | 0.052 (3) | 0.093 (4) | −0.028 (3) | 0.004 (3) | −0.003 (3) |
| C6 | 0.045 (3) | 0.038 (2) | 0.043 (2) | 0.0000 (18) | 0.0022 (19) | −0.0043 (17) |
| C7 | 0.075 (3) | 0.061 (3) | 0.044 (2) | −0.017 (2) | −0.005 (2) | −0.0039 (19) |
| C8 | 0.040 (2) | 0.038 (2) | 0.039 (2) | 0.0029 (18) | −0.0085 (17) | 0.0004 (17) |
| C9 | 0.047 (3) | 0.0368 (19) | 0.0342 (19) | 0.0021 (18) | −0.0066 (17) | −0.0001 (16) |
| C10 | 0.087 (4) | 0.059 (3) | 0.069 (3) | −0.024 (3) | −0.034 (3) | 0.015 (3) |
| N1—C5 | 1.320 (6) | C3—C4 | 1.345 (7) |
| N1—C1 | 1.330 (5) | C3—H3 | 0.9300 |
| N2—C6 | 1.277 (4) | C4—C5 | 1.366 (8) |
| N2—N3 | 1.364 (4) | C4—H4 | 0.9300 |
| N3—C8 | 1.334 (5) | C5—H5 | 0.9300 |
| N3—H3NA | 0.87 (4) | C6—C7 | 1.498 (5) |
| N4—C9 | 1.285 (5) | C7—H7A | 0.9600 |
| N4—O2 | 1.388 (4) | C7—H7B | 0.9600 |
| O1—C8 | 1.233 (4) | C7—H7C | 0.9600 |
| O2—H2OA | 0.84 (5) | C8—C9 | 1.477 (5) |
| C1—C2 | 1.374 (6) | C9—C10 | 1.471 (5) |
| C1—C6 | 1.488 (5) | C10—H10A | 0.9600 |
| C2—C3 | 1.362 (6) | C10—H10B | 0.9600 |
| C2—H2 | 0.9300 | C10—H10C | 0.9600 |
| C5—N1—C1 | 117.2 (4) | N2—C6—C1 | 115.7 (3) |
| C6—N2—N3 | 117.7 (3) | N2—C6—C7 | 124.4 (4) |
| C8—N3—N2 | 120.1 (3) | C1—C6—C7 | 119.9 (4) |
| C8—N3—H3NA | 116 (2) | C6—C7—H7A | 109.5 |
| N2—N3—H3NA | 122 (2) | C6—C7—H7B | 109.5 |
| C9—N4—O2 | 111.7 (3) | H7A—C7—H7B | 109.5 |
| N4—O2—H2OA | 97 (3) | C6—C7—H7C | 109.5 |
| N1—C1—C2 | 121.7 (4) | H7A—C7—H7C | 109.5 |
| N1—C1—C6 | 115.9 (3) | H7B—C7—H7C | 109.5 |
| C2—C1—C6 | 122.4 (4) | O1—C8—N3 | 123.3 (4) |
| C3—C2—C1 | 119.4 (5) | O1—C8—C9 | 120.0 (3) |
| C3—C2—H2 | 120.3 | N3—C8—C9 | 116.7 (3) |
| C1—C2—H2 | 120.3 | N4—C9—C10 | 125.5 (4) |
| C4—C3—C2 | 119.3 (5) | N4—C9—C8 | 115.0 (3) |
| C4—C3—H3 | 120.3 | C10—C9—C8 | 119.5 (3) |
| C2—C3—H3 | 120.3 | C9—C10—H10A | 109.5 |
| C3—C4—C5 | 118.1 (4) | C9—C10—H10B | 109.5 |
| C3—C4—H4 | 121.0 | H10A—C10—H10B | 109.5 |
| C5—C4—H4 | 121.0 | C9—C10—H10C | 109.5 |
| N1—C5—C4 | 124.2 (5) | H10A—C10—H10C | 109.5 |
| N1—C5—H5 | 117.9 | H10B—C10—H10C | 109.5 |
| C4—C5—H5 | 117.9 | ||
| C6—N2—N3—C8 | −175.2 (3) | C2—C1—C6—N2 | −0.3 (6) |
| C5—N1—C1—C2 | −0.3 (6) | N1—C1—C6—C7 | 0.2 (5) |
| C5—N1—C1—C6 | −179.7 (4) | C2—C1—C6—C7 | −179.2 (4) |
| N1—C1—C2—C3 | −0.9 (7) | N2—N3—C8—O1 | −0.1 (6) |
| C6—C1—C2—C3 | 178.5 (4) | N2—N3—C8—C9 | 179.6 (3) |
| C1—C2—C3—C4 | 1.3 (8) | O2—N4—C9—C10 | 0.7 (6) |
| C2—C3—C4—C5 | −0.7 (8) | O2—N4—C9—C8 | 179.1 (3) |
| C1—N1—C5—C4 | 0.9 (8) | O1—C8—C9—N4 | −164.0 (4) |
| C3—C4—C5—N1 | −0.5 (9) | N3—C8—C9—N4 | 16.3 (5) |
| N3—N2—C6—C1 | −179.7 (3) | O1—C8—C9—C10 | 14.5 (6) |
| N3—N2—C6—C7 | −0.8 (5) | N3—C8—C9—C10 | −165.2 (4) |
| N1—C1—C6—N2 | 179.1 (3) |
| H··· | ||||
| O2—H2OA···O1i | 0.84 (5) | 1.88 (5) | 2.709 (4) | 170 (5) |
| N3—H3NA···N4 | 0.87 (4) | 2.30 (4) | 2.640 (4) | 104 (3) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O2—H2 | 0.84 (5) | 1.88 (5) | 2.709 (4) | 170 (5) |
| N3—H3 | 0.87 (4) | 2.30 (4) | 2.640 (4) | 104 (3) |
Symmetry code: (i) .