Literature DB >> 21577640

2-Hydroxy-imino-N'-[1-(2-pyrid-yl)ethyl-idene]propanohydrazide.

Yurii S Moroz, Irina S Konovalova, Turganbay S Iskenderov, Svetlana V Pavlova, Oleg V Shishkin.   

Abstract

The title compound, C(10)H(12)N(4)O(2), features an intra-molecular N-H⋯N hydrogen bond formed between the imine NH and oxime N atoms. The oxime group and the amide C=O bond are anti to each other. In the crystal, mol-ecules are connected by O-H⋯O hydrogen bonds into supra-molecular zigzag chains along the c axis.

Entities:  

Year:  2009        PMID: 21577640      PMCID: PMC2969988          DOI: 10.1107/S1600536809033352

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For oxime and pyridine derivatives, see: Sliva et al. (1997b ▶); Mokhir et al. (2002 ▶); Krämer et al. (2002 ▶); Kovbasyuk et al. (2004 ▶). For 2-hydroxy­imino­propanamide and amide derivatives of 2-hydroxy­imino­propanoic acid, see: Onindo et al. (1995 ▶); Duda et al. (1997 ▶); Sliva et al. (1997a ▶). For the preparation and characterization of 3d-metal complexes with 2-hydroxy­imino-N′-[1-(2-pyrid­yl)ethyl­idene]propano­hydra­zone, see: Moroz et al. (2008a ▶,b ▶). For typical bond lengths, see: Bürgi & Dunitz (1994 ▶).

Experimental

Crystal data

C10H12N4O2 M = 220.24 Monoclinic, a = 4.4498 (11) Å b = 22.833 (7) Å c = 10.955 (3) Å β = 97.47 (2)° V = 1103.7 (5) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 293 K 0.15 × 0.10 × 0.05 mm

Data collection

Oxford Diffraction KM-4/Xcalibur diffractometer with a Sapphire3 detector Absorption correction: multi-scan (CrysAlis CCD; Oxford Diffraction, 2006 ▶) T min = 0.986, T max = 0.995 3899 measured reflections 958 independent reflections 793 reflections with I > 2σ(I) R int = 0.059

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.097 S = 1.10 958 reflections 155 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.13 e Å−3 Δρmin = −0.16 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2006 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2006 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809033352/tk2523sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809033352/tk2523Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H12N4O2F(000) = 464
Mr = 220.24Dx = 1.325 Mg m3
Monoclinic, CcMo Kα radiation, λ = 0.71073 Å
Hall symbol: C -2ycCell parameters from 5860 reflections
a = 4.4498 (11) Åθ = 3.6–32.0°
b = 22.833 (7) ŵ = 0.10 mm1
c = 10.955 (3) ÅT = 293 K
β = 97.47 (2)°Needles, white
V = 1103.7 (5) Å30.15 × 0.10 × 0.05 mm
Z = 4
Oxford Diffraction KM-4/Xcalibur diffractometer with a Sapphire3 detector958 independent reflections
Radiation source: Enhance (Mo) X-ray Source793 reflections with I > 2σ(I)
graphiteRint = 0.059
Detector resolution: 16.1827 pixels mm-1θmax = 25.0°, θmin = 3.6°
φ scans and ω scans with κ offseth = −5→5
Absorption correction: multi-scan (CrysAlis CCD; Oxford Diffraction, 2006)k = −25→26
Tmin = 0.986, Tmax = 0.995l = −12→12
3899 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.046H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.097w = 1/[σ2(Fo2) + (0.0453P)2 + 0.2337P] where P = (Fo2 + 2Fc2)/3
S = 1.10(Δ/σ)max < 0.001
958 reflectionsΔρmax = 0.13 e Å3
155 parametersΔρmin = −0.16 e Å3
2 restraintsAbsolute structure: nd
Primary atom site location: structure-invariant direct methods
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N1−0.4385 (8)0.29326 (15)0.1660 (4)0.0601 (10)
N2−0.0269 (7)0.41668 (13)0.0900 (3)0.0411 (8)
N30.1840 (7)0.45542 (13)0.1431 (3)0.0418 (8)
N40.6418 (7)0.52027 (13)0.2434 (3)0.0402 (8)
O10.1686 (7)0.50958 (13)−0.0301 (3)0.0624 (9)
O20.8544 (6)0.55993 (14)0.2979 (3)0.0559 (8)
C1−0.3464 (9)0.33542 (16)0.0958 (4)0.0439 (10)
C2−0.4547 (11)0.3399 (2)−0.0272 (4)0.0624 (13)
H2−0.38910.3701−0.07430.075*
C3−0.6589 (11)0.2998 (2)−0.0793 (5)0.0763 (16)
H3−0.73100.3019−0.16280.092*
C4−0.7553 (11)0.2573 (2)−0.0090 (5)0.0706 (15)
H4−0.89620.2296−0.04230.085*
C5−0.6403 (13)0.2558 (2)0.1128 (6)0.0750 (15)
H5−0.70850.22650.16140.090*
C6−0.1176 (8)0.37676 (17)0.1582 (3)0.0425 (10)
C7−0.0053 (11)0.3692 (2)0.2922 (4)0.0607 (13)
H7A−0.04160.40440.33570.091*
H7B0.20820.36110.30220.091*
H7C−0.11030.33720.32460.091*
C80.2702 (8)0.50043 (16)0.0783 (3)0.0405 (9)
C90.4981 (9)0.54051 (15)0.1430 (3)0.0404 (10)
C100.5493 (13)0.59805 (19)0.0889 (5)0.0755 (16)
H10A0.36340.61190.04400.113*
H10B0.70010.59450.03420.113*
H10C0.61770.62530.15340.113*
H3NA0.239 (8)0.4565 (15)0.222 (4)0.035 (10)*
H2OA0.932 (11)0.5383 (19)0.355 (5)0.061 (14)*
U11U22U33U12U13U23
N10.063 (2)0.045 (2)0.069 (3)−0.013 (2)−0.0028 (19)0.0015 (19)
N20.0370 (18)0.0396 (16)0.0439 (18)−0.0042 (15)−0.0056 (14)−0.0027 (15)
N30.0436 (19)0.0436 (19)0.0353 (19)−0.0083 (16)−0.0062 (15)−0.0009 (14)
N40.0361 (18)0.0403 (17)0.0408 (18)−0.0022 (15)−0.0078 (14)−0.0055 (14)
O10.071 (2)0.0603 (18)0.0478 (17)−0.0208 (16)−0.0238 (15)0.0105 (14)
O20.0555 (18)0.0570 (18)0.0478 (17)−0.0045 (15)−0.0220 (13)−0.0013 (14)
C10.036 (2)0.041 (2)0.054 (2)0.0004 (18)0.0032 (19)−0.0047 (18)
C20.068 (3)0.071 (3)0.046 (2)−0.025 (3)0.002 (2)−0.007 (2)
C30.072 (4)0.089 (4)0.063 (3)−0.026 (3)−0.007 (3)−0.020 (3)
C40.051 (3)0.058 (3)0.100 (4)−0.020 (2)0.000 (3)−0.028 (3)
C50.078 (4)0.052 (3)0.093 (4)−0.028 (3)0.004 (3)−0.003 (3)
C60.045 (3)0.038 (2)0.043 (2)0.0000 (18)0.0022 (19)−0.0043 (17)
C70.075 (3)0.061 (3)0.044 (2)−0.017 (2)−0.005 (2)−0.0039 (19)
C80.040 (2)0.038 (2)0.039 (2)0.0029 (18)−0.0085 (17)0.0004 (17)
C90.047 (3)0.0368 (19)0.0342 (19)0.0021 (18)−0.0066 (17)−0.0001 (16)
C100.087 (4)0.059 (3)0.069 (3)−0.024 (3)−0.034 (3)0.015 (3)
N1—C51.320 (6)C3—C41.345 (7)
N1—C11.330 (5)C3—H30.9300
N2—C61.277 (4)C4—C51.366 (8)
N2—N31.364 (4)C4—H40.9300
N3—C81.334 (5)C5—H50.9300
N3—H3NA0.87 (4)C6—C71.498 (5)
N4—C91.285 (5)C7—H7A0.9600
N4—O21.388 (4)C7—H7B0.9600
O1—C81.233 (4)C7—H7C0.9600
O2—H2OA0.84 (5)C8—C91.477 (5)
C1—C21.374 (6)C9—C101.471 (5)
C1—C61.488 (5)C10—H10A0.9600
C2—C31.362 (6)C10—H10B0.9600
C2—H20.9300C10—H10C0.9600
C5—N1—C1117.2 (4)N2—C6—C1115.7 (3)
C6—N2—N3117.7 (3)N2—C6—C7124.4 (4)
C8—N3—N2120.1 (3)C1—C6—C7119.9 (4)
C8—N3—H3NA116 (2)C6—C7—H7A109.5
N2—N3—H3NA122 (2)C6—C7—H7B109.5
C9—N4—O2111.7 (3)H7A—C7—H7B109.5
N4—O2—H2OA97 (3)C6—C7—H7C109.5
N1—C1—C2121.7 (4)H7A—C7—H7C109.5
N1—C1—C6115.9 (3)H7B—C7—H7C109.5
C2—C1—C6122.4 (4)O1—C8—N3123.3 (4)
C3—C2—C1119.4 (5)O1—C8—C9120.0 (3)
C3—C2—H2120.3N3—C8—C9116.7 (3)
C1—C2—H2120.3N4—C9—C10125.5 (4)
C4—C3—C2119.3 (5)N4—C9—C8115.0 (3)
C4—C3—H3120.3C10—C9—C8119.5 (3)
C2—C3—H3120.3C9—C10—H10A109.5
C3—C4—C5118.1 (4)C9—C10—H10B109.5
C3—C4—H4121.0H10A—C10—H10B109.5
C5—C4—H4121.0C9—C10—H10C109.5
N1—C5—C4124.2 (5)H10A—C10—H10C109.5
N1—C5—H5117.9H10B—C10—H10C109.5
C4—C5—H5117.9
C6—N2—N3—C8−175.2 (3)C2—C1—C6—N2−0.3 (6)
C5—N1—C1—C2−0.3 (6)N1—C1—C6—C70.2 (5)
C5—N1—C1—C6−179.7 (4)C2—C1—C6—C7−179.2 (4)
N1—C1—C2—C3−0.9 (7)N2—N3—C8—O1−0.1 (6)
C6—C1—C2—C3178.5 (4)N2—N3—C8—C9179.6 (3)
C1—C2—C3—C41.3 (8)O2—N4—C9—C100.7 (6)
C2—C3—C4—C5−0.7 (8)O2—N4—C9—C8179.1 (3)
C1—N1—C5—C40.9 (8)O1—C8—C9—N4−164.0 (4)
C3—C4—C5—N1−0.5 (9)N3—C8—C9—N416.3 (5)
N3—N2—C6—C1−179.7 (3)O1—C8—C9—C1014.5 (6)
N3—N2—C6—C7−0.8 (5)N3—C8—C9—C10−165.2 (4)
N1—C1—C6—N2179.1 (3)
D—H···AD—HH···AD···AD—H···A
O2—H2OA···O1i0.84 (5)1.88 (5)2.709 (4)170 (5)
N3—H3NA···N40.87 (4)2.30 (4)2.640 (4)104 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2OA⋯O1i0.84 (5)1.88 (5)2.709 (4)170 (5)
N3—H3NA⋯N40.87 (4)2.30 (4)2.640 (4)104 (3)

Symmetry code: (i) .

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