Literature DB >> 21754447

3-Chloro-pyridin-2-amine.

Zhi-Nan Hu, Hui-Bin Yang, Huan Luo, Bin Li.   

Abstract

In the title compound, C(5)H(5)ClN(2), a by-product in the synthesis of ethyl 2-(3-chloro-pyridin-2-yl)-5-oxopyrazolidine-3-carboxyl-ate, the amine groups form inter-molecular hydrogen-bonding associations with pyridine N-atom acceptors, giving centrosymmetric cyclic dimers. Short inter-molecular Cl⋯Cl inter-actions [3.278 (3) Å] also occur.

Entities:  

Year:  2011        PMID: 21754447      PMCID: PMC3089079          DOI: 10.1107/S1600536811013432

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

The title compound was isolated as a by-product in the preparation of ethyl 2-(3-chloro­pyridin-2-yl)-5-oxopyrazolidine-3-carboxyl­ate, an inter­mediate in the synthesis of the insecticide chlorantraniliprole (systematic name 3-bromo-N-[4-chloro-2-methyl-6-[(methyl­amino)carbon­yl]phen­yl]-1-(3-chloro-2-pyridin­yl)-1H-pyrazole-5-carboxamide), see: Lahm et al. (2005 ▶). For related structures, see: Chao et al. (1975 ▶); Anagnostis & Turnbull (1998 ▶); Hemamalini & Fun (2010 ▶).

Experimental

Crystal data

C5H5ClN2 M = 128.56 Monoclinic, a = 11.149 (8) Å b = 5.453 (4) Å c = 9.844 (7) Å β = 90.581 (12)° V = 598.5 (7) Å3 Z = 4 Mo Kα radiation μ = 0.52 mm−1 T = 296 K 0.38 × 0.32 × 0.22 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.827, T max = 0.894 2778 measured reflections 1057 independent reflections 867 reflections with I > 2σ(I) R int = 0.048

Refinement

R[F 2 > 2σ(F 2)] = 0.059 wR(F 2) = 0.182 S = 1.05 1057 reflections 73 parameters H-atom parameters constrained Δρmax = 0.57 e Å−3 Δρmin = −0.31 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811013432/zs2107sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811013432/zs2107Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C5H5ClN2F(000) = 264
Mr = 128.56Dx = 1.427 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1473 reflections
a = 11.149 (8) Åθ = 3.7–27.2°
b = 5.453 (4) ŵ = 0.52 mm1
c = 9.844 (7) ÅT = 296 K
β = 90.581 (12)°Block, yellow
V = 598.5 (7) Å30.38 × 0.32 × 0.22 mm
Z = 4
Bruker SMART CCD area-detector diffractometer1057 independent reflections
Radiation source: fine-focus sealed tube867 reflections with I > 2σ(I)
graphiteRint = 0.048
φ and ω scansθmax = 25.0°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Bruker, 2001)h = −13→11
Tmin = 0.827, Tmax = 0.894k = −6→6
2778 measured reflectionsl = −8→11
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.059Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.182H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.1147P)2 + 0.2179P] where P = (Fo2 + 2Fc2)/3
1057 reflections(Δ/σ)max < 0.001
73 parametersΔρmax = 0.57 e Å3
0 restraintsΔρmin = −0.31 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.89884 (8)0.20978 (18)0.46576 (10)0.0821 (5)
N10.6085 (2)0.5920 (5)0.3676 (2)0.0597 (7)
N20.6357 (3)0.2720 (5)0.5172 (3)0.0716 (8)
H2A0.56130.28360.53850.086*
H2B0.68040.16280.55530.086*
C10.6825 (2)0.4252 (5)0.4237 (3)0.0505 (7)
C20.8035 (2)0.4167 (5)0.3855 (3)0.0535 (7)
C30.8465 (3)0.5728 (6)0.2897 (3)0.0635 (8)
H30.92660.56670.26450.076*
C40.7692 (3)0.7404 (7)0.2306 (3)0.0725 (10)
H40.79550.84810.16400.087*
C50.6520 (3)0.7431 (6)0.2735 (4)0.0698 (9)
H50.60000.85710.23450.084*
U11U22U33U12U13U23
Cl10.0717 (7)0.0833 (7)0.0913 (8)0.0322 (4)0.0101 (5)0.0145 (4)
N10.0545 (13)0.0566 (14)0.0681 (15)0.0068 (11)0.0018 (10)0.0047 (11)
N20.0674 (16)0.0602 (16)0.088 (2)0.0131 (12)0.0194 (14)0.0196 (13)
C10.0572 (14)0.0411 (13)0.0533 (15)0.0036 (11)0.0026 (11)−0.0039 (11)
C20.0558 (15)0.0510 (15)0.0537 (15)0.0099 (11)0.0019 (11)−0.0057 (12)
C30.0561 (15)0.076 (2)0.0583 (17)−0.0019 (14)0.0070 (13)0.0002 (14)
C40.077 (2)0.074 (2)0.067 (2)−0.0049 (15)0.0047 (17)0.0178 (15)
C50.073 (2)0.0617 (19)0.074 (2)0.0057 (14)−0.0054 (16)0.0155 (15)
Cl1—C21.735 (3)C2—C31.361 (4)
N1—C51.334 (4)C3—C41.380 (4)
N1—C11.344 (4)C3—H30.9300
N2—C11.351 (4)C4—C51.378 (5)
N2—H2A0.8600C4—H40.9300
N2—H2B0.8600C5—H50.9300
C1—C21.405 (4)
C5—N1—C1118.5 (3)C2—C3—C4118.9 (3)
C1—N2—H2A120.0C2—C3—H3120.6
C1—N2—H2B120.0C4—C3—H3120.6
H2A—N2—H2B120.0C5—C4—C3117.9 (3)
N1—C1—N2117.3 (3)C5—C4—H4121.0
N1—C1—C2120.0 (2)C3—C4—H4121.0
N2—C1—C2122.7 (2)N1—C5—C4124.0 (3)
C3—C2—C1120.7 (3)N1—C5—H5118.0
C3—C2—Cl1120.2 (2)C4—C5—H5118.0
C1—C2—Cl1119.0 (2)
C5—N1—C1—N2−179.0 (3)C1—C2—C3—C40.1 (5)
C5—N1—C1—C21.5 (4)Cl1—C2—C3—C4−178.0 (2)
N1—C1—C2—C3−1.3 (4)C2—C3—C4—C50.9 (5)
N2—C1—C2—C3179.2 (3)C1—N1—C5—C4−0.6 (5)
N1—C1—C2—Cl1176.8 (2)C3—C4—C5—N1−0.7 (5)
N2—C1—C2—Cl1−2.6 (4)
D—H···AD—HH···AD···AD—H···A
N2—H2A···N1i0.862.223.051 (5)162
N2—H2B···Cl10.862.613.001 (4)109
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2A⋯N1i0.862.223.051 (5)162

Symmetry code: (i) .

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