Literature DB >> 22606092

N'-[(1E,2E)-3,7-Dimethyl-octa-2,6-dien-1-yl-idene]pyridine-4-carbohydrazide.

Mashooq A Bhat, Hatem A Abdel-Aziz, Hazem A Ghabbour, Madhukar Hemamalini, Hoong-Kun Fun.   

Abstract

In the title compound, C(16)H(21)N(3)O, the mol-ecule adopts an E conformation about the central C=N double bond. The 2-methyl-pent-2-ene group is disordered over two sets of sites, with a refined occupancy ratio of 0.785 (8):0.215 (8). The dihedral angle between the essentially planar [the r.m.s. value for the major component is 0.021 (7) and its maximum deviation is 0.025 (4) Å; the r.m.s. value for the minor component is 0.03 (4) and its maximum deviation is 0.05 (3) Å] major and minor components of the 2-methyl-but-2-ene group is 35.9 (13)°. In the crystal, C-H⋯O and N-H⋯O hydrogen bonds link the molecules, with the same O atom acting as the acceptor. This results in C(1) (1)(4) and C(1) (1)(5) [001] chains.

Entities:  

Year:  2012        PMID: 22606092      PMCID: PMC3344089          DOI: 10.1107/S1600536812009075

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For details and the biological activity of isoniazide, see: Janin (2007 ▶); Maccari et al. (2005 ▶); Slayden & Barry (2000 ▶); Hearn et al. (2009 ▶); Tripathi et al. (2011 ▶). For related structures, see: Naveenkumar et al. (2010) ▶; Jiang et al. (2009 ▶); Khan et al. (2009 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C16H21N3O M = 271.36 Monoclinic, a = 17.5415 (8) Å b = 12.0708 (6) Å c = 7.8430 (4) Å β = 101.854 (3)° V = 1625.26 (14) Å3 Z = 4 Cu Kα radiation μ = 0.56 mm−1 T = 296 K 0.90 × 0.27 × 0.17 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.633, T max = 0.912 16548 measured reflections 2978 independent reflections 2376 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.154 S = 1.03 2978 reflections 239 parameters 12 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.13 e Å−3 Δρmin = −0.14 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812009075/lh5421sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812009075/lh5421Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812009075/lh5421Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H21N3OF(000) = 584
Mr = 271.36Dx = 1.109 Mg m3
Monoclinic, P21/cCu Kα radiation, λ = 1.54178 Å
Hall symbol: -P 2ybcCell parameters from 1053 reflections
a = 17.5415 (8) Åθ = 11.3–69.5°
b = 12.0708 (6) ŵ = 0.56 mm1
c = 7.8430 (4) ÅT = 296 K
β = 101.854 (3)°Block, colourless
V = 1625.26 (14) Å30.90 × 0.27 × 0.17 mm
Z = 4
Bruker SMART APEXII CCD area-detector diffractometer2978 independent reflections
Radiation source: fine-focus sealed tube2376 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.027
φ and ω scansθmax = 69.7°, θmin = 5.2°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −16→21
Tmin = 0.633, Tmax = 0.912k = −14→14
16548 measured reflectionsl = −9→7
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.049H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.154w = 1/[σ2(Fo2) + (0.0826P)2 + 0.2272P] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max < 0.001
2978 reflectionsΔρmax = 0.13 e Å3
239 parametersΔρmin = −0.14 e Å3
12 restraintsExtinction correction: SHELXTL (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0032 (6)
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
O10.30512 (6)0.61845 (10)0.31148 (14)0.0640 (3)
N10.06078 (9)0.62725 (17)0.5444 (3)0.0897 (5)
N20.40983 (7)0.76093 (12)0.49025 (19)0.0656 (4)
N30.33659 (7)0.74425 (12)0.52777 (18)0.0602 (4)
C10.09771 (12)0.54801 (19)0.4767 (3)0.0905 (7)
H1A0.07240.48050.45110.109*
C20.17110 (10)0.55920 (16)0.4418 (3)0.0746 (5)
H2A0.19420.50070.39410.090*
C30.20985 (8)0.65855 (13)0.47852 (19)0.0558 (4)
C40.17217 (9)0.74139 (15)0.5489 (2)0.0686 (5)
H4A0.19590.80990.57560.082*
C50.09864 (10)0.72159 (19)0.5792 (3)0.0822 (6)
H5A0.07420.77850.62740.099*
C60.28809 (8)0.67137 (13)0.43211 (19)0.0534 (4)
C70.45447 (9)0.82229 (15)0.6011 (2)0.0645 (4)
H7A0.43660.85090.69570.077*
C80.53221 (10)0.84735 (17)0.5801 (3)0.0746 (5)
H8A0.54850.81690.48460.089*
C90.58251 (11)0.91090 (18)0.6876 (3)0.0837 (6)
C100.66541 (16)0.9344 (4)0.6696 (6)0.0871 (10)0.785 (8)
H10A0.67131.01390.66000.105*0.785 (8)
H10B0.70020.91090.77620.105*0.785 (8)
C110.69190 (18)0.8806 (3)0.5187 (5)0.0900 (11)0.785 (8)
H11A0.69290.80080.53410.108*0.785 (8)
H11B0.65500.89750.41180.108*0.785 (8)
C120.77113 (18)0.9196 (3)0.5033 (6)0.0828 (10)0.785 (8)
H12A0.77100.98630.44390.099*0.785 (8)
C130.8396 (4)0.8782 (5)0.5571 (15)0.0811 (19)0.785 (8)
C140.9134 (3)0.9352 (6)0.5393 (11)0.1003 (15)0.785 (8)
H14A0.90111.00450.47980.150*0.785 (8)
H14B0.94160.88910.47390.150*0.785 (8)
H14C0.94480.94860.65290.150*0.785 (8)
C150.8582 (5)0.7702 (6)0.6537 (11)0.162 (3)0.785 (8)
H15A0.81210.74200.68630.242*0.785 (8)
H15B0.89770.78230.75640.242*0.785 (8)
H15C0.87660.71750.57970.242*0.785 (8)
C10A0.6475 (6)0.9475 (14)0.5992 (19)0.0871 (10)0.215 (8)
H10C0.63140.93710.47430.105*0.215 (8)
H10D0.65771.02580.62100.105*0.215 (8)
C11A0.7184 (8)0.8848 (17)0.663 (4)0.169 (13)0.215 (8)
H11C0.71120.81040.61560.203*0.215 (8)
H11D0.72570.87870.78870.203*0.215 (8)
C12A0.7911 (7)0.9321 (12)0.620 (4)0.123 (7)0.215 (8)
H12B0.79711.00810.60890.148*0.215 (8)
C13A0.8464 (13)0.8625 (17)0.599 (5)0.080 (8)0.215 (8)
C14A0.9212 (14)0.901 (3)0.562 (6)0.170 (16)0.215 (8)
H14D0.92580.97930.57970.255*0.215 (8)
H14E0.92320.88370.44340.255*0.215 (8)
H14F0.96330.86410.63880.255*0.215 (8)
C15A0.8294 (13)0.7391 (13)0.588 (4)0.137 (8)0.215 (8)
H15D0.77430.72730.57420.206*0.215 (8)
H15E0.85620.70360.69250.206*0.215 (8)
H15F0.84680.70840.48950.206*0.215 (8)
C160.56438 (16)0.9641 (3)0.8453 (4)0.1287 (12)
H16A0.51690.93370.86830.193*
H16B0.55841.04240.82650.193*
H16C0.60610.95050.94320.193*
H1N30.3250 (10)0.7786 (15)0.617 (2)0.063 (5)*
U11U22U33U12U13U23
O10.0566 (6)0.0690 (7)0.0683 (7)−0.0046 (5)0.0170 (5)−0.0065 (5)
N10.0508 (8)0.1053 (13)0.1165 (14)−0.0154 (8)0.0259 (8)−0.0068 (10)
N20.0505 (7)0.0773 (9)0.0744 (8)−0.0136 (6)0.0255 (6)−0.0094 (7)
N30.0465 (7)0.0721 (9)0.0658 (8)−0.0116 (6)0.0201 (6)−0.0093 (6)
C10.0625 (10)0.0804 (13)0.1331 (18)−0.0218 (10)0.0307 (11)−0.0046 (12)
C20.0580 (9)0.0658 (10)0.1026 (13)−0.0102 (8)0.0223 (9)−0.0010 (9)
C30.0449 (7)0.0622 (9)0.0593 (8)−0.0041 (6)0.0088 (6)0.0055 (7)
C40.0483 (8)0.0737 (11)0.0836 (11)−0.0076 (7)0.0132 (7)−0.0115 (8)
C50.0489 (9)0.0978 (14)0.1012 (14)−0.0048 (9)0.0183 (9)−0.0194 (11)
C60.0462 (7)0.0559 (8)0.0584 (8)−0.0027 (6)0.0113 (6)0.0051 (6)
C70.0512 (8)0.0720 (10)0.0741 (10)−0.0121 (7)0.0217 (7)−0.0097 (8)
C80.0554 (9)0.0845 (12)0.0895 (12)−0.0165 (8)0.0281 (8)−0.0174 (9)
C90.0561 (10)0.0823 (13)0.1158 (15)−0.0172 (9)0.0251 (10)−0.0202 (11)
C100.0477 (14)0.0936 (18)0.117 (3)−0.0193 (15)0.0097 (16)−0.015 (2)
C110.0575 (16)0.111 (2)0.107 (2)−0.0183 (15)0.0294 (15)−0.0033 (18)
C120.0540 (15)0.0843 (19)0.113 (2)−0.0069 (13)0.0249 (15)0.0191 (18)
C130.078 (3)0.077 (3)0.093 (4)0.007 (2)0.026 (2)0.018 (3)
C140.0549 (18)0.110 (4)0.140 (3)0.004 (2)0.030 (2)0.001 (3)
C150.162 (6)0.127 (5)0.209 (7)0.022 (4)0.068 (5)0.075 (5)
C10A0.0477 (14)0.0936 (18)0.117 (3)−0.0193 (15)0.0097 (16)−0.015 (2)
C11A0.081 (9)0.146 (15)0.29 (3)0.031 (9)0.064 (14)0.12 (2)
C12A0.064 (7)0.086 (8)0.22 (2)−0.013 (6)0.039 (11)0.026 (12)
C13A0.072 (8)0.069 (9)0.11 (2)0.023 (6)0.037 (10)0.034 (8)
C14A0.095 (14)0.12 (2)0.28 (4)0.012 (12)0.001 (16)−0.03 (2)
C15A0.121 (14)0.070 (9)0.20 (2)0.029 (9)−0.008 (12)−0.009 (10)
C160.0951 (17)0.160 (3)0.137 (2)−0.0471 (18)0.0378 (15)−0.071 (2)
O1—C61.2283 (18)C12—C131.290 (7)
N1—C51.318 (3)C12—H12A0.9300
N1—C11.326 (3)C13—C141.497 (6)
N2—C71.280 (2)C13—C151.510 (7)
N2—N31.3903 (17)C14—H14A0.9600
N3—C61.341 (2)C14—H14B0.9600
N3—H1N30.873 (18)C14—H14C0.9600
C1—C21.377 (2)C15—H15A0.9600
C1—H1A0.9300C15—H15B0.9600
C2—C31.379 (2)C15—H15C0.9600
C2—H2A0.9300C10A—C11A1.454 (14)
C3—C41.375 (2)C10A—H10C0.9700
C3—C61.4985 (18)C10A—H10D0.9700
C4—C51.380 (2)C11A—C12A1.497 (13)
C4—H4A0.9300C11A—H11C0.9700
C5—H5A0.9300C11A—H11D0.9700
C7—C81.439 (2)C12A—C13A1.320 (16)
C7—H7A0.9300C12A—H12B0.9300
C8—C91.331 (3)C13A—C14A1.474 (16)
C8—H8A0.9300C13A—C15A1.518 (17)
C9—C161.485 (3)C14A—H14D0.9600
C9—C101.516 (2)C14A—H14E0.9600
C9—C10A1.517 (3)C14A—H14F0.9600
C10—C111.505 (4)C15A—H15D0.9600
C10—H10A0.9700C15A—H15E0.9600
C10—H10B0.9700C15A—H15F0.9600
C11—C121.496 (4)C16—H16A0.9600
C11—H11A0.9700C16—H16B0.9600
C11—H11B0.9700C16—H16C0.9600
C5—N1—C1116.07 (15)C12—C13—C15126.1 (5)
C7—N2—N3113.78 (13)C14—C13—C15110.0 (6)
C6—N3—N2118.96 (13)C13—C14—H14A109.5
C6—N3—H1N3122.3 (12)C13—C14—H14B109.5
N2—N3—H1N3118.6 (12)H14A—C14—H14B109.5
N1—C1—C2124.24 (18)C13—C14—H14C109.5
N1—C1—H1A117.9H14A—C14—H14C109.5
C2—C1—H1A117.9H14B—C14—H14C109.5
C1—C2—C3118.98 (18)C13—C15—H15A109.5
C1—C2—H2A120.5C13—C15—H15B109.5
C3—C2—H2A120.5H15A—C15—H15B109.5
C4—C3—C2117.33 (14)C13—C15—H15C109.5
C4—C3—C6124.20 (14)H15A—C15—H15C109.5
C2—C3—C6118.40 (15)H15B—C15—H15C109.5
C3—C4—C5119.13 (17)C11A—C10A—C9111.1 (10)
C3—C4—H4A120.4C11A—C10A—H10C109.4
C5—C4—H4A120.4C9—C10A—H10C109.4
N1—C5—C4124.25 (18)C11A—C10A—H10D109.4
N1—C5—H5A117.9C9—C10A—H10D109.4
C4—C5—H5A117.9H10C—C10A—H10D108.0
O1—C6—N3123.05 (13)C10A—C11A—C12A115.6 (10)
O1—C6—C3120.88 (13)C10A—C11A—H11C108.4
N3—C6—C3116.06 (13)C12A—C11A—H11C108.4
N2—C7—C8120.42 (15)C10A—C11A—H11D108.4
N2—C7—H7A119.8C12A—C11A—H11D108.4
C8—C7—H7A119.8H11C—C11A—H11D107.5
C9—C8—C7124.73 (17)C13A—C12A—C11A117.9 (14)
C9—C8—H8A117.6C13A—C12A—H12B121.0
C7—C8—H8A117.6C11A—C12A—H12B121.0
C8—C9—C16123.28 (17)C12A—C13A—C14A122.2 (17)
C8—C9—C10124.9 (2)C12A—C13A—C15A119.4 (16)
C16—C9—C10111.7 (2)C14A—C13A—C15A118.0 (18)
C8—C9—C10A110.0 (7)C13A—C14A—H14D109.5
C16—C9—C10A124.4 (7)C13A—C14A—H14E109.5
C10—C9—C10A22.7 (5)H14D—C14A—H14E109.5
C11—C10—C9116.7 (3)C13A—C14A—H14F109.5
C11—C10—H10A108.1H14D—C14A—H14F109.5
C9—C10—H10A108.1H14E—C14A—H14F109.5
C11—C10—H10B108.1C13A—C15A—H15D109.5
C9—C10—H10B108.1C13A—C15A—H15E109.5
H10A—C10—H10B107.3H15D—C15A—H15E109.5
C12—C11—C10111.7 (3)C13A—C15A—H15F109.5
C12—C11—H11A109.3H15D—C15A—H15F109.5
C10—C11—H11A109.3H15E—C15A—H15F109.5
C12—C11—H11B109.3C9—C16—H16A109.5
C10—C11—H11B109.3C9—C16—H16B109.5
H11A—C11—H11B107.9H16A—C16—H16B109.5
C13—C12—C11132.1 (4)C9—C16—H16C109.5
C13—C12—H12A113.9H16A—C16—H16C109.5
C11—C12—H12A113.9H16B—C16—H16C109.5
C12—C13—C14123.8 (6)
C7—N2—N3—C6−172.49 (15)C7—C8—C9—C160.4 (4)
C5—N1—C1—C2−0.2 (4)C7—C8—C9—C10177.8 (3)
N1—C1—C2—C30.0 (4)C7—C8—C9—C10A−162.8 (6)
C1—C2—C3—C40.0 (3)C8—C9—C10—C11−0.3 (6)
C1—C2—C3—C6−177.16 (18)C16—C9—C10—C11177.4 (4)
C2—C3—C4—C50.1 (3)C10A—C9—C10—C11−54.2 (19)
C6—C3—C4—C5177.14 (16)C9—C10—C11—C12173.7 (3)
C1—N1—C5—C40.3 (3)C10—C11—C12—C1396.6 (9)
C3—C4—C5—N1−0.3 (3)C11—C12—C13—C14−175.3 (6)
N2—N3—C6—O1−0.3 (2)C11—C12—C13—C151.4 (15)
N2—N3—C6—C3−179.34 (13)C8—C9—C10A—C11A−103 (2)
C4—C3—C6—O1−149.52 (17)C16—C9—C10A—C11A94 (2)
C2—C3—C6—O127.5 (2)C10—C9—C10A—C11A31.7 (18)
C4—C3—C6—N329.5 (2)C9—C10A—C11A—C12A−165.1 (17)
C2—C3—C6—N3−153.47 (16)C10A—C11A—C12A—C13A−149 (3)
N3—N2—C7—C8−179.95 (16)C11A—C12A—C13A—C14A−178 (3)
N2—C7—C8—C9179.4 (2)C11A—C12A—C13A—C15A10 (5)
D—H···AD—HH···AD···AD—H···A
N3—H1N3···O1i0.873 (17)2.052 (17)2.9167 (18)170.8 (16)
C4—H4A···O1i0.932.533.251 (2)135
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H1N3⋯O1i0.873 (17)2.052 (17)2.9167 (18)170.8 (16)
C4—H4A⋯O1i0.932.533.251 (2)135

Symmetry code: (i) .

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Authors:  H S Naveenkumar; Amirin Sadikun; Pazilah Ibrahim; Madhukar Hemamalini; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-05-15

9.  Preparation and antitubercular activities in vitro and in vivo of novel Schiff bases of isoniazid.

Authors:  Michael J Hearn; Michael H Cynamon; Michaeline F Chen; Rebecca Coppins; Jessica Davis; Helen Joo-On Kang; Abigail Noble; Becky Tu-Sekine; Marianne S Terrot; Daniella Trombino; Minh Thai; Eleanor R Webster; Rebecca Wilson
Journal:  Eur J Med Chem       Date:  2009-05-21       Impact factor: 6.514

10.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  10 in total
  1 in total

1.  (E)-2-(2,3-Dimethyl-anilino)-N'-(thio-phen-2-yl-methyl-idene)benzohydrazide.

Authors:  Hoong-Kun Fun; Tze Shyang Chia; Mashooq A Bhat; Mohamed A Al-Omar; Hatem A Abdel-Aziz
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-07-25
  1 in total

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