Literature DB >> 21578303

4-Bromo-5-[(5,5-dimethyl-4,5-dihydro-isoxazol-3-yl)sulfonyl-meth-yl]-3-methyl-1-(2,2,2-trifluoro-ethyl)-1H-pyrazole.

Hong-Ju Ma1, Qian-Fei Zhao, Xiang-Dong Mei, Jun Ning.   

Abstract

In the title compound, C(12)H(15)BrF(3)N(3)O(3)S, which has potential herbicidal activity, the mol-ecule is twisted, as indicated by the C-S-C-C torsion angle of 67.86 (19)° for the atoms linking the ring systems. An intra-molecular C-H⋯F short contact occurs and inter-molecular C-H⋯O inter-actions link the mol-ecules in the crystal.

Entities:  

Year:  2009        PMID: 21578303      PMCID: PMC2971122          DOI: 10.1107/S1600536809040380

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to pyrazoles and their pharmacological and pharmaceutical applications, see: Aiello et al. (2000 ▶); Hirai et al. (2002 ▶); Lahm et al. (2007 ▶); Meegalla et al. (2004 ▶); Ohno et al. (2004 ▶); Shiga et al. (2003 ▶); Sivaprasad et al. (2006 ▶); Vicentini et al. (2005 ▶); Waldrep et al. (1990 ▶). The trifluoro­methyl group is present in many biologically active pharmaceutical and agrochemical compounds, presumably due to its increased lipophilicity, electronegativity and relatively small size, see: Welch (1987 ▶).

Experimental

Crystal data

C12H15BrF3N3O3S M = 418.24 Monoclinic, a = 16.127 (3) Å b = 5.4356 (11) Å c = 19.135 (4) Å β = 106.85 (3)° V = 1605.3 (6) Å3 Z = 4 Mo Kα radiation μ = 2.74 mm−1 T = 173 K 0.16 × 0.15 × 0.05 mm

Data collection

Rigaku MM007HF + CCD (Saturn724+) diffractometer Absorption correction: numerical (CrystalClear; Rigaku, 2008 ▶) T min = 0.668, T max = 0.875 11131 measured reflections 3614 independent reflections 3353 reflections with I > 2σ(I) R int = 0.040

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.093 S = 1.14 3614 reflections 211 parameters H-atom parameters constrained Δρmax = 0.44 e Å−3 Δρmin = −0.50 e Å−3 Data collection: CrystalClear (Rigaku, 2008 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809040380/hb5125sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809040380/hb5125Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H15BrF3N3O3SF(000) = 840
Mr = 418.24Dx = 1.730 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 5465 reflections
a = 16.127 (3) Åθ = 1.5–27.5°
b = 5.4356 (11) ŵ = 2.74 mm1
c = 19.135 (4) ÅT = 173 K
β = 106.85 (3)°Slab, colourless
V = 1605.3 (6) Å30.16 × 0.15 × 0.05 mm
Z = 4
Rigaku MM007HF + CCD (Saturn724+) diffractometer3614 independent reflections
Radiation source: Rotating Anode3353 reflections with I > 2σ(I)
ConfocalRint = 0.040
Detector resolution: 28.5714 pixels mm-1θmax = 27.5°, θmin = 1.5°
ω scans at fixed χ = 45°h = −20→18
Absorption correction: numerical (CrystalClear; Rigaku, 2008)k = −7→6
Tmin = 0.668, Tmax = 0.875l = −21→24
11131 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.034Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.093H-atom parameters constrained
S = 1.14w = 1/[σ2(Fo2) + (0.0399P)2 + 1.0315P] where P = (Fo2 + 2Fc2)/3
3614 reflections(Δ/σ)max = 0.001
211 parametersΔρmax = 0.44 e Å3
0 restraintsΔρmin = −0.50 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br10.445686 (15)0.94374 (5)0.090555 (14)0.03063 (10)
S10.36847 (3)0.46277 (11)0.24140 (3)0.01880 (13)
F10.05557 (10)0.1917 (4)0.03774 (10)0.0506 (5)
F20.10792 (11)0.5508 (4)0.06883 (11)0.0533 (5)
F30.09624 (11)0.4150 (4)−0.03880 (9)0.0446 (5)
O10.34862 (11)0.5488 (4)0.30560 (9)0.0302 (4)
O20.35701 (10)0.2071 (3)0.22232 (9)0.0278 (4)
O30.60544 (10)0.5023 (3)0.23928 (9)0.0247 (4)
N10.29249 (12)0.3877 (4)−0.01482 (10)0.0245 (4)
N20.27115 (12)0.4000 (4)0.04901 (10)0.0202 (4)
N30.52217 (12)0.4076 (4)0.22290 (11)0.0218 (4)
C10.36847 (14)0.6842 (4)0.05707 (12)0.0215 (5)
C20.35194 (15)0.5606 (5)−0.01018 (12)0.0233 (5)
C30.31611 (14)0.5796 (4)0.09432 (12)0.0190 (4)
C40.39090 (17)0.6042 (6)−0.07062 (14)0.0352 (6)
H4A0.36490.4916−0.11100.053*
H4B0.45350.5753−0.05310.053*
H4C0.38000.7745−0.08760.053*
C50.20495 (14)0.2363 (5)0.05891 (12)0.0235 (5)
H5A0.21720.19660.11140.028*
H5B0.20640.08090.03230.028*
C60.11590 (16)0.3492 (5)0.03153 (14)0.0306 (6)
C70.30517 (14)0.6434 (5)0.16676 (12)0.0203 (4)
H7A0.24330.62470.16410.024*
H7B0.32060.81880.17700.024*
C80.47706 (14)0.5475 (4)0.25141 (12)0.0180 (4)
C90.52301 (14)0.7679 (5)0.29165 (13)0.0242 (5)
H9A0.51520.78240.34090.029*
H9B0.50410.92210.26410.029*
C100.61659 (14)0.6997 (4)0.29502 (13)0.0221 (5)
C110.66758 (17)0.9027 (5)0.27253 (17)0.0347 (6)
H11A0.72290.83700.26910.052*
H11B0.67861.03470.30900.052*
H11C0.63430.96820.22490.052*
C120.66479 (18)0.5845 (5)0.36726 (15)0.0359 (6)
H12A0.72020.51880.36430.054*
H12B0.63000.45080.37860.054*
H12C0.67540.70930.40580.054*
U11U22U33U12U13U23
Br10.02683 (15)0.02743 (17)0.03790 (17)−0.00740 (9)0.00979 (11)0.00368 (10)
S10.0184 (3)0.0222 (3)0.0175 (3)−0.00311 (19)0.0078 (2)−0.0020 (2)
F10.0246 (8)0.0738 (14)0.0495 (10)−0.0205 (8)0.0044 (7)0.0103 (9)
F20.0288 (9)0.0612 (13)0.0659 (13)0.0097 (8)0.0074 (8)−0.0243 (10)
F30.0334 (9)0.0640 (13)0.0331 (9)0.0067 (8)0.0043 (7)0.0170 (8)
O10.0277 (9)0.0473 (12)0.0192 (8)−0.0046 (8)0.0126 (7)−0.0057 (8)
O20.0285 (9)0.0204 (9)0.0328 (9)−0.0056 (7)0.0065 (7)0.0001 (7)
O30.0180 (8)0.0272 (9)0.0307 (9)−0.0019 (6)0.0098 (7)−0.0084 (7)
N10.0237 (10)0.0334 (12)0.0174 (9)0.0014 (8)0.0076 (8)−0.0002 (8)
N20.0185 (9)0.0257 (10)0.0173 (9)−0.0007 (7)0.0065 (7)−0.0004 (8)
N30.0187 (9)0.0221 (10)0.0251 (10)−0.0013 (7)0.0070 (8)−0.0031 (8)
C10.0183 (10)0.0239 (12)0.0220 (11)0.0001 (8)0.0055 (8)0.0036 (9)
C20.0204 (11)0.0320 (14)0.0185 (11)0.0040 (9)0.0072 (9)0.0041 (9)
C30.0180 (10)0.0201 (11)0.0187 (10)0.0014 (8)0.0047 (8)0.0009 (8)
C40.0289 (13)0.0569 (19)0.0236 (13)−0.0009 (12)0.0133 (10)0.0072 (12)
C50.0231 (11)0.0254 (12)0.0219 (11)−0.0066 (9)0.0066 (9)0.0003 (9)
C60.0242 (12)0.0373 (15)0.0295 (13)−0.0075 (11)0.0067 (10)0.0009 (11)
C70.0190 (10)0.0207 (12)0.0217 (11)0.0008 (8)0.0067 (8)−0.0028 (9)
C80.0181 (10)0.0189 (11)0.0170 (10)−0.0008 (8)0.0049 (8)−0.0015 (8)
C90.0199 (11)0.0235 (12)0.0298 (12)−0.0028 (9)0.0083 (9)−0.0064 (10)
C100.0208 (11)0.0183 (12)0.0261 (12)−0.0002 (8)0.0053 (9)−0.0037 (9)
C110.0256 (13)0.0256 (14)0.0546 (18)−0.0013 (10)0.0141 (12)0.0048 (12)
C120.0350 (14)0.0383 (16)0.0277 (14)0.0000 (11)−0.0014 (11)0.0005 (11)
Br1—C11.868 (2)C4—H4B0.9800
S1—O11.4346 (17)C4—H4C0.9800
S1—O21.4351 (18)C5—C61.509 (3)
S1—C81.767 (2)C5—H5A0.9900
S1—C71.789 (2)C5—H5B0.9900
F1—C61.327 (3)C7—H7A0.9900
F2—C61.334 (3)C7—H7B0.9900
F3—C61.339 (3)C8—C91.499 (3)
O3—N31.387 (2)C9—C101.537 (3)
O3—C101.487 (3)C9—H9A0.9900
N1—C21.327 (3)C9—H9B0.9900
N1—N21.363 (3)C10—C121.511 (3)
N2—C31.366 (3)C10—C111.512 (3)
N2—C51.444 (3)C11—H11A0.9800
N3—C81.279 (3)C11—H11B0.9800
C1—C31.376 (3)C11—H11C0.9800
C1—C21.407 (3)C12—H12A0.9800
C2—C41.487 (3)C12—H12B0.9800
C3—C71.488 (3)C12—H12C0.9800
C4—H4A0.9800
O1—S1—O2119.28 (11)F1—C6—C5110.8 (2)
O1—S1—C8106.41 (11)F2—C6—C5112.2 (2)
O2—S1—C8109.30 (10)F3—C6—C5112.5 (2)
O1—S1—C7106.71 (11)C3—C7—S1114.91 (16)
O2—S1—C7109.08 (11)C3—C7—H7A108.5
C8—S1—C7105.17 (11)S1—C7—H7A108.5
N3—O3—C10109.76 (16)C3—C7—H7B108.5
C2—N1—N2105.69 (19)S1—C7—H7B108.5
N1—N2—C3112.23 (19)H7A—C7—H7B107.5
N1—N2—C5118.40 (19)N3—C8—C9115.9 (2)
C3—N2—C5129.33 (19)N3—C8—S1117.85 (17)
C8—N3—O3108.43 (18)C9—C8—S1126.24 (17)
C3—C1—C2107.1 (2)C8—C9—C1099.33 (18)
C3—C1—Br1125.64 (18)C8—C9—H9A111.9
C2—C1—Br1127.23 (18)C10—C9—H9A111.9
N1—C2—C1109.9 (2)C8—C9—H9B111.9
N1—C2—C4121.4 (2)C10—C9—H9B111.9
C1—C2—C4128.7 (2)H9A—C9—H9B109.6
N2—C3—C1105.0 (2)O3—C10—C12106.28 (19)
N2—C3—C7125.0 (2)O3—C10—C11106.6 (2)
C1—C3—C7130.0 (2)C12—C10—C11112.6 (2)
C2—C4—H4A109.5O3—C10—C9103.34 (17)
C2—C4—H4B109.5C12—C10—C9112.1 (2)
H4A—C4—H4B109.5C11—C10—C9114.9 (2)
C2—C4—H4C109.5C10—C11—H11A109.5
H4A—C4—H4C109.5C10—C11—H11B109.5
H4B—C4—H4C109.5H11A—C11—H11B109.5
N2—C5—C6111.7 (2)C10—C11—H11C109.5
N2—C5—H5A109.3H11A—C11—H11C109.5
C6—C5—H5A109.3H11B—C11—H11C109.5
N2—C5—H5B109.3C10—C12—H12A109.5
C6—C5—H5B109.3C10—C12—H12B109.5
H5A—C5—H5B107.9H12A—C12—H12B109.5
F1—C6—F2107.2 (2)C10—C12—H12C109.5
F1—C6—F3107.2 (2)H12A—C12—H12C109.5
F2—C6—F3106.7 (2)H12B—C12—H12C109.5
C2—N1—N2—C30.2 (3)N2—C3—C7—S186.0 (2)
C2—N1—N2—C5178.1 (2)C1—C3—C7—S1−96.3 (3)
C10—O3—N3—C810.9 (2)O1—S1—C7—C3−179.38 (16)
N2—N1—C2—C1−0.1 (3)O2—S1—C7—C3−49.28 (19)
N2—N1—C2—C4−179.6 (2)C8—S1—C7—C367.86 (19)
C3—C1—C2—N10.0 (3)O3—N3—C8—C91.1 (3)
Br1—C1—C2—N1−179.51 (17)O3—N3—C8—S1−177.89 (14)
C3—C1—C2—C4179.4 (2)O1—S1—C8—N3148.46 (19)
Br1—C1—C2—C40.0 (4)O2—S1—C8—N318.4 (2)
N1—N2—C3—C1−0.2 (3)C7—S1—C8—N3−98.6 (2)
C5—N2—C3—C1−177.8 (2)O1—S1—C8—C9−30.4 (2)
N1—N2—C3—C7178.0 (2)O2—S1—C8—C9−160.43 (19)
C5—N2—C3—C70.4 (4)C7—S1—C8—C982.6 (2)
C2—C1—C3—N20.2 (2)N3—C8—C9—C10−11.7 (3)
Br1—C1—C3—N2179.65 (16)S1—C8—C9—C10167.21 (17)
C2—C1—C3—C7−177.9 (2)N3—O3—C10—C12100.6 (2)
Br1—C1—C3—C71.6 (4)N3—O3—C10—C11−139.07 (19)
N1—N2—C5—C6−89.7 (2)N3—O3—C10—C9−17.6 (2)
C3—N2—C5—C687.8 (3)C8—C9—C10—O316.2 (2)
N2—C5—C6—F1176.9 (2)C8—C9—C10—C12−97.8 (2)
N2—C5—C6—F2−63.4 (3)C8—C9—C10—C11131.9 (2)
N2—C5—C6—F356.9 (3)
D—H···AD—HH···AD···AD—H···A
C7—H7A···F20.992.443.229 (3)137
C5—H5A···O1i0.992.303.131 (3)141
C7—H7B···O2ii0.992.293.271 (3)169
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C7—H7A⋯F20.992.443.229 (3)137
C5—H5A⋯O1i0.992.303.131 (3)141
C7—H7B⋯O2ii0.992.293.271 (3)169

Symmetry codes: (i) ; (ii) .

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