Literature DB >> 21578142

catena-Poly[[(4-formyl-benzoato-κO)(isonicotinamide-κN)zinc(II)]-μ-4-formyl-benzoato-κO:O].

Tuncer Hökelek, Filiz Yılmaz, Barış Tercan, Mustafa Sertçelik, Hacali Necefoğlu.   

Abstract

In the title compound, [Zn(C(8)H(5)O(3))(2)(C(6)H(6)N(2)O)](n), the Zn(II) ion is tetrahedrally coordinated by two formyl-benzoate (FB) and one isonicotinamide (INA) ligands while symmetry-related FB ligands bridge adjacent Zn(II) ions, forming polymeric chains along the b axis. The carboxyl-ate groups in the two FB ions are twisted away from the attached benzene ring by 9.07 (2) and 26.2 (2)°. The two benzene rings of the FB ions are oriented at a dihedral angle of 81.30 (5)°. In the crystal, adjacent polymeric chains inter-act via N-H⋯O and C-H⋯O hydrogen bonds, π-π contacts between the formyl-benzoate rings [centroid-centroid distance = 3.7736 (8) Å] and weak C-H⋯π inter-actions, forming a three-dimensional network.

Entities:  

Year:  2009        PMID: 21578142      PMCID: PMC2971359          DOI: 10.1107/S160053680904241X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to niacin, see: Krishnamachari (1974 ▶). For the crystal structure of n class="Chemical">N,N-diethyl­nicotinamide, see: Bigoli et al. (1972 ▶). For related structures, see: Hökelek & Necefoğlu (1996 ▶); Hökelek et al. (2009 ▶).

Experimental

Crystal data

[Zn(C8H5O3)2(C6n class="Species">H6N2O)] M = 485.74 Monoclinic, a = 13.3143 (2) Å b = 6.7857 (1) Å c = 21.3927 (3) Å β = 91.458 (1)° V = 1932.14 (5) Å3 Z = 4 Mo Kα radiation μ = 1.32 mm−1 T = 100 K 0.22 × 0.12 × 0.08 mm

Data collection

Bruker Kappa APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.829, T max = 0.903 17841 measured reflections 4812 independent reflections 4086 reflections with I > 2σ(I) R int = 0.072

Refinement

R[F 2 > 2σ(F 2)] = 0.028 wR(F 2) = 0.080 S = 1.10 4812 reflections 297 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.47 e Å−3 Δρmin = −0.39 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053680904241X/ci2939sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680904241X/ci2939Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Zn(C8H5O3)2(C6H6N2O)]F(000) = 992
Mr = 485.74Dx = 1.670 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 9448 reflections
a = 13.3143 (2) Åθ = 3.1–28.4°
b = 6.7857 (1) ŵ = 1.32 mm1
c = 21.3927 (3) ÅT = 100 K
β = 91.458 (1)°Needle, colourless
V = 1932.14 (5) Å30.22 × 0.12 × 0.08 mm
Z = 4
Bruker Kappa APEXII CCD area-detector diffractometer4812 independent reflections
Radiation source: fine-focus sealed tube4086 reflections with I > 2σ(I)
graphiteRint = 0.072
φ and ω scansθmax = 28.4°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −17→14
Tmin = 0.829, Tmax = 0.903k = −8→9
17841 measured reflectionsl = −28→28
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.028Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.080H atoms treated by a mixture of independent and constrained refinement
S = 1.10w = 1/[σ2(Fo2) + (0.0394P)2 + 0.0092P] where P = (Fo2 + 2Fc2)/3
4812 reflections(Δ/σ)max = 0.001
297 parametersΔρmax = 0.47 e Å3
0 restraintsΔρmin = −0.39 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Zn10.816160 (13)0.51300 (2)0.187880 (8)0.01058 (7)
O10.95052 (8)0.60767 (16)0.20123 (5)0.0149 (2)
O21.00643 (8)0.55706 (16)0.10502 (5)0.0149 (2)
O30.77863 (8)0.37932 (15)0.26575 (5)0.0134 (2)
O40.70741 (8)0.67550 (14)0.15404 (5)0.0137 (2)
O50.83582 (11)−0.07543 (19)−0.07713 (6)0.0312 (3)
O61.49773 (9)0.61367 (17)0.23858 (5)0.0199 (3)
O71.10801 (11)0.97953 (16)0.45862 (6)0.0236 (3)
N10.81632 (9)0.29546 (17)0.12295 (6)0.0112 (3)
N20.91501 (11)−0.28715 (18)−0.01158 (6)0.0182 (3)
H2A0.9269−0.3695−0.04100.022*
H2B0.9348−0.31250.02620.022*
C11.02044 (11)0.5821 (2)0.16202 (7)0.0110 (3)
C21.12564 (11)0.5862 (2)0.18971 (7)0.0109 (3)
C31.14051 (12)0.5879 (2)0.25423 (7)0.0126 (3)
H31.08570.58670.28030.015*
C41.23802 (12)0.5913 (2)0.27978 (7)0.0131 (3)
H41.24870.59060.32290.016*
C51.31866 (11)0.5957 (2)0.24033 (7)0.0122 (3)
C61.30379 (12)0.5942 (2)0.17551 (7)0.0143 (3)
H61.35850.59790.14940.017*
C71.20746 (12)0.5872 (2)0.15043 (7)0.0134 (3)
H71.19710.58320.10730.016*
C80.81930 (11)0.3293 (2)0.31722 (7)0.0115 (3)
C90.89783 (12)0.4527 (2)0.34954 (7)0.0114 (3)
C100.96360 (12)0.3649 (2)0.39317 (7)0.0149 (3)
H100.96030.22990.40040.018*
C111.03354 (13)0.4785 (2)0.42548 (8)0.0162 (3)
H111.07920.41880.45310.019*
C121.03609 (12)0.6823 (2)0.41700 (7)0.0140 (3)
C130.97104 (12)0.7698 (2)0.37288 (7)0.0138 (3)
H130.97300.90530.36660.017*
C140.90409 (12)0.6556 (2)0.33872 (7)0.0122 (3)
H140.86270.71380.30830.015*
C150.86757 (11)0.1289 (2)0.13520 (7)0.0125 (3)
H150.89240.10740.17570.015*
C160.88489 (13)−0.0119 (2)0.09003 (8)0.0139 (3)
H160.9213−0.12510.10000.017*
C170.84719 (12)0.0179 (2)0.02948 (8)0.0126 (3)
C180.79165 (12)0.1872 (2)0.01756 (7)0.0147 (3)
H180.76390.2097−0.02210.018*
C190.77770 (12)0.3220 (2)0.06473 (7)0.0136 (3)
H190.74040.43500.05610.016*
C200.86597 (12)−0.1204 (2)−0.02441 (7)0.0157 (3)
C211.42128 (13)0.6036 (2)0.26818 (8)0.0161 (3)
H211.4266 (13)0.600 (3)0.3157 (9)0.028 (5)*
C221.10601 (13)0.8010 (2)0.45686 (8)0.0188 (4)
H221.1561 (13)0.714 (3)0.4842 (9)0.020 (5)*
U11U22U33U12U13U23
Zn10.01001 (11)0.01290 (10)0.00882 (11)0.00080 (6)−0.00023 (7)−0.00111 (6)
O10.0092 (6)0.0225 (6)0.0129 (5)−0.0007 (4)0.0003 (4)−0.0045 (4)
O20.0144 (6)0.0195 (5)0.0106 (5)0.0021 (5)−0.0019 (5)−0.0020 (4)
O30.0120 (6)0.0184 (5)0.0098 (5)−0.0013 (4)−0.0021 (4)0.0016 (4)
O40.0134 (6)0.0141 (5)0.0135 (5)0.0030 (4)−0.0013 (5)−0.0022 (4)
O50.0524 (9)0.0310 (7)0.0097 (6)0.0163 (7)−0.0092 (6)−0.0050 (5)
O60.0130 (6)0.0295 (6)0.0172 (6)−0.0013 (5)−0.0005 (5)0.0005 (5)
O70.0279 (8)0.0248 (6)0.0181 (7)−0.0107 (5)0.0007 (6)−0.0038 (5)
N10.0094 (7)0.0145 (6)0.0096 (6)−0.0011 (5)−0.0002 (5)0.0003 (5)
N20.0256 (8)0.0193 (6)0.0094 (6)0.0055 (6)−0.0018 (6)−0.0037 (5)
C10.0111 (8)0.0103 (6)0.0115 (7)0.0008 (6)−0.0008 (6)−0.0005 (6)
C20.0111 (8)0.0102 (6)0.0113 (7)0.0000 (6)−0.0016 (6)0.0001 (6)
C30.0128 (8)0.0145 (7)0.0106 (7)0.0009 (6)0.0017 (6)0.0001 (6)
C40.0164 (8)0.0143 (7)0.0085 (7)0.0000 (6)−0.0008 (6)−0.0002 (6)
C50.0121 (8)0.0110 (7)0.0135 (8)0.0003 (6)−0.0016 (6)0.0002 (6)
C60.0113 (8)0.0190 (7)0.0127 (7)−0.0008 (6)0.0028 (6)−0.0003 (6)
C70.0143 (8)0.0183 (7)0.0076 (7)0.0006 (6)−0.0008 (6)0.0006 (6)
C80.0096 (8)0.0138 (7)0.0113 (7)0.0029 (6)0.0015 (6)−0.0023 (6)
C90.0098 (8)0.0154 (7)0.0091 (7)−0.0002 (6)0.0015 (6)−0.0020 (6)
C100.0173 (9)0.0137 (7)0.0137 (8)0.0002 (6)−0.0001 (7)−0.0003 (6)
C110.0144 (9)0.0206 (8)0.0134 (8)0.0021 (6)−0.0043 (7)−0.0003 (6)
C120.0113 (8)0.0191 (7)0.0117 (7)−0.0021 (6)−0.0004 (6)−0.0029 (6)
C130.0149 (8)0.0136 (7)0.0129 (7)−0.0015 (6)0.0041 (6)−0.0024 (6)
C140.0111 (8)0.0164 (7)0.0090 (7)0.0020 (6)0.0012 (6)0.0004 (6)
C150.0116 (8)0.0171 (7)0.0087 (7)0.0004 (6)−0.0023 (6)0.0008 (6)
C160.0157 (9)0.0140 (7)0.0120 (8)0.0026 (6)−0.0017 (7)−0.0003 (5)
C170.0147 (8)0.0143 (7)0.0088 (8)−0.0022 (6)0.0006 (6)−0.0003 (5)
C180.0169 (9)0.0176 (7)0.0094 (7)−0.0006 (6)−0.0029 (6)0.0014 (6)
C190.0130 (8)0.0150 (7)0.0128 (7)0.0019 (6)−0.0011 (6)0.0029 (6)
C200.0180 (9)0.0185 (7)0.0106 (7)0.0001 (6)−0.0013 (7)−0.0024 (6)
C210.0173 (9)0.0171 (7)0.0139 (8)0.0003 (6)−0.0024 (7)−0.0003 (6)
C220.0174 (9)0.0260 (8)0.0131 (8)−0.0046 (7)0.0007 (7)−0.0018 (7)
Zn1—O11.9153 (11)C7—C61.378 (2)
Zn1—O31.9723 (11)C7—H70.93
Zn1—O41.9450 (10)C8—O4ii1.2669 (18)
Zn1—N12.0270 (12)C8—C91.495 (2)
O1—C11.2807 (18)C9—C101.397 (2)
O2—C11.2405 (18)C9—C141.3990 (19)
O3—C81.2611 (17)C10—H100.93
O4—C8i1.2669 (18)C11—C101.381 (2)
O5—C201.2261 (18)C11—H110.93
O6—C211.214 (2)C12—C111.395 (2)
O7—C221.2124 (19)C12—C131.397 (2)
N1—C151.3427 (18)C12—C221.484 (2)
N1—C191.3474 (18)C13—C141.377 (2)
N2—C201.332 (2)C13—H130.93
N2—H2A0.86C14—H140.93
N2—H2B0.86C15—H150.93
C2—C11.507 (2)C16—C151.382 (2)
C2—C31.390 (2)C16—C171.392 (2)
C2—C71.393 (2)C16—H160.93
C3—C41.396 (2)C18—C171.386 (2)
C3—H30.93C18—H180.93
C4—H40.93C19—C181.378 (2)
C5—C41.383 (2)C19—H190.93
C5—C61.396 (2)C20—C171.512 (2)
C5—C211.478 (2)C21—H211.018 (19)
C6—H60.93C22—H221.057 (17)
O1—Zn1—O3106.50 (4)C14—C9—C8121.23 (13)
O1—Zn1—O4123.30 (5)C9—C10—H10120.0
O1—Zn1—N1109.22 (5)C11—C10—C9119.95 (14)
O3—Zn1—N1104.39 (5)C11—C10—H10120.0
O4—Zn1—O3111.89 (5)C10—C11—C12120.45 (15)
O4—Zn1—N199.88 (5)C10—C11—H11119.8
C1—O1—Zn1123.27 (10)C12—C11—H11119.8
C8—O3—Zn1138.48 (10)C11—C12—C13119.50 (14)
C8i—O4—Zn1120.13 (10)C11—C12—C22118.70 (15)
C15—N1—Zn1119.26 (10)C13—C12—C22121.77 (14)
C15—N1—C19118.22 (13)C12—C13—H13120.0
C19—N1—Zn1121.95 (10)C14—C13—C12120.09 (14)
C20—N2—H2A120.0C14—C13—H13120.0
C20—N2—H2B120.0C9—C14—H14119.8
H2A—N2—H2B120.0C13—C14—C9120.42 (14)
O1—C1—C2115.07 (13)C13—C14—H14119.8
O2—C1—O1124.67 (14)N1—C15—C16122.57 (14)
O2—C1—C2120.25 (14)N1—C15—H15118.7
C3—C2—C1119.87 (14)C16—C15—H15118.7
C3—C2—C7120.36 (14)C15—C16—C17119.19 (14)
C7—C2—C1119.76 (13)C15—C16—H16120.4
C2—C3—C4119.77 (14)C17—C16—H16120.4
C2—C3—H3120.1C16—C17—C20123.82 (13)
C4—C3—H3120.1C18—C17—C16118.00 (14)
C3—C4—H4120.3C18—C17—C20118.16 (14)
C5—C4—C3119.36 (14)C17—C18—H18120.1
C5—C4—H4120.3C19—C18—C17119.77 (14)
C4—C5—C6120.90 (14)C19—C18—H18120.1
C4—C5—C21118.62 (14)N1—C19—C18122.20 (14)
C6—C5—C21120.48 (14)N1—C19—H19118.9
C5—C6—H6120.2C18—C19—H19118.9
C7—C6—C5119.60 (14)O5—C20—N2123.26 (15)
C7—C6—H6120.2O5—C20—C17119.35 (14)
C2—C7—H7120.0N2—C20—C17117.39 (13)
C6—C7—C2119.98 (14)O6—C21—C5124.78 (15)
C6—C7—H7120.0O6—C21—H21119.0 (11)
O3—C8—O4ii121.72 (14)C5—C21—H21116.3 (11)
O3—C8—C9122.19 (13)O7—C22—C12124.98 (17)
O4ii—C8—C9116.01 (13)O7—C22—H22121.9 (9)
C10—C9—C8119.27 (13)C12—C22—H22113.1 (9)
C10—C9—C14119.45 (14)
O3—Zn1—O1—C1132.27 (11)C21—C5—C4—C3178.69 (13)
O4—Zn1—O1—C1−96.44 (12)C4—C5—C6—C7−0.3 (2)
N1—Zn1—O1—C120.07 (13)C21—C5—C6—C7−179.85 (14)
O1—Zn1—O3—C8−6.56 (15)C4—C5—C21—O6−177.81 (15)
O4—Zn1—O3—C8−143.97 (14)C6—C5—C21—O61.7 (2)
N1—Zn1—O3—C8108.94 (15)C2—C7—C6—C51.5 (2)
O1—Zn1—O4—C8i−60.90 (13)O3—C8—C9—C10−158.23 (15)
O3—Zn1—O4—C8i68.17 (12)O3—C8—C9—C1424.3 (2)
N1—Zn1—O4—C8i178.16 (11)O4ii—C8—C9—C1024.8 (2)
O1—Zn1—N1—C1562.86 (12)O4ii—C8—C9—C14−152.61 (15)
O1—Zn1—N1—C19−108.32 (12)C8—C9—C10—C11−177.06 (15)
O3—Zn1—N1—C15−50.72 (12)C14—C9—C10—C110.4 (2)
O3—Zn1—N1—C19138.10 (12)C8—C9—C14—C13174.28 (14)
O4—Zn1—N1—C15−166.53 (11)C10—C9—C14—C13−3.2 (2)
O4—Zn1—N1—C1922.29 (13)C12—C11—C10—C92.9 (3)
Zn1—O1—C1—O225.4 (2)C13—C12—C11—C10−3.6 (3)
Zn1—O1—C1—C2−155.21 (9)C22—C12—C11—C10174.41 (16)
Zn1—O3—C8—O4ii−147.48 (12)C11—C12—C13—C140.9 (2)
Zn1—O3—C8—C935.8 (2)C22—C12—C13—C14−177.08 (15)
Zn1—N1—C15—C16−169.24 (12)C11—C12—C22—O7−171.97 (17)
C19—N1—C15—C162.3 (2)C13—C12—C22—O76.0 (3)
Zn1—N1—C19—C18169.38 (12)C12—C13—C14—C92.5 (2)
C15—N1—C19—C18−1.9 (2)C17—C16—C15—N1−0.7 (2)
C3—C2—C1—O19.2 (2)C15—C16—C17—C18−1.4 (2)
C3—C2—C1—O2−171.42 (14)C15—C16—C17—C20176.70 (15)
C7—C2—C1—O1−171.18 (13)C19—C18—C17—C161.7 (2)
C7—C2—C1—O28.2 (2)C19—C18—C17—C20−176.45 (14)
C1—C2—C3—C4179.87 (13)N1—C19—C18—C17−0.1 (2)
C7—C2—C3—C40.2 (2)N2—C20—C17—C165.3 (2)
C1—C2—C7—C6178.94 (14)N2—C20—C17—C18−176.65 (15)
C3—C2—C7—C6−1.4 (2)O5—C20—C17—C16−174.85 (17)
C2—C3—C4—C50.9 (2)O5—C20—C17—C183.2 (2)
C6—C5—C4—C3−0.8 (2)
D—H···AD—HH···AD···AD—H···A
N2—H2A···O2iii0.862.082.9242 (17)165
N2—H2B···O2iv0.862.112.9439 (17)163
C4—H4···O5v0.932.413.298 (2)160
C6—H6···O7vi0.932.503.223 (2)135
C15—H15···O6vi0.932.323.2049 (19)159
C16—H16···O2iv0.932.443.3541 (18)169
C3—H3···Cg10.932.733.6332 (17)163
Table 1

Selected bond lengths (Å)

Zn1—O11.9153 (11)
Zn1—O31.9723 (11)
Zn1—O41.9450 (10)
Zn1—N12.0270 (12)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2A⋯O2i0.862.082.9242 (17)165
N2—H2B⋯O2ii0.862.112.9439 (17)163
C4—H4⋯O5iii0.932.413.298 (2)160
C6—H6⋯O7iv0.932.503.223 (2)135
C15—H15⋯O6iv0.932.323.2049 (19)159
C16—H16⋯O2ii0.932.443.3541 (18)169
C3—H3⋯Cg10.932.733.6332 (17)163

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) . Cg1 is the centroid of the C9–C14 ring.

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4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total
  5 in total

1.  catena-Poly[[aqua-(2-iodo-benzoato-κO)cobalt(II)]-μ-aqua-μ-2-iodo-benzoato-κ(2)O:O'].

Authors:  Omür Aydın; Nagihan Caylak Delibaş; Hacali Necefoğlu; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-04-18

2.  catena-Poly[[(4-methyl-benzoato-κO)manganese(II)]-μ-aqua-bis-(μ-4-methyl-benzoato-κO:O')[(4-methyl-benzoato-κO)manganese(II)]-bis-(μ-N,N-diethyl-nicotinamide)-κN:O;O:N].

Authors:  Tuncer Hökelek; Hakan Dal; Barış Tercan; Efdal Cimen; Hacali Necefoğlu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-05

3.  catena-Poly[[di-aqua-bis-(4-formyl-benzo-ato-κO (1))nickel(II)]-μ-pyrazine-κ(2) N:N'].

Authors:  Fatih Celik; Nefise Dilek; Nagihan Caylak Delibaş; Hacali Necefoğlu; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-01-25

4.  catena-Poly[aqua-bis-(μ-3-chloro-benzo-ato-κ(2) O:O')zinc].

Authors:  Nihat Bozkurt; Nefise Dilek; Nagihan Caylak Delibaş; Hacali Necefoğlu; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-06-15

5.  catena-Poly[[di-aqua-bis-(4-formyl-benzoato-κO (1))copper(II)]-μ-pyrazine-κ(2) N:N'].

Authors:  Fatih Celik; Nefise Dilek; Nagihan Caylak Delibaş; Hacali Necefoğlu; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-12-07
  5 in total

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