Literature DB >> 22590108

catena-Poly[[aqua-(2-iodo-benzoato-κO)cobalt(II)]-μ-aqua-μ-2-iodo-benzoato-κ(2)O:O'].

Omür Aydın, Nagihan Caylak Delibaş, Hacali Necefoğlu, Tuncer Hökelek.   

Abstract

The asymmetric unit of the polymeric title compound, [Co(C(7)H(4)IO(2))(2)(H(2)O)(2)](n), contains one Co(II) cation, two iodo-benzoate anions and two water mol-ecules. One iodo-benzoate anion and one water mol-ecule bridge adjacent Co cations, forming a polymeric chain running along the a axis, while the other iodo-benzoate anion and water mol-ecule coordinate in a monodentate manner to the Co(II) cation, completing the slightly distorted octa-hedral geometry. In the two independent anionic ligands, the carboxyl-ate groups are twisted away from the attached benzene rings by 51.38 (18) and 39.89 (11)°, and the two benzene rings are nearly perpendicular to each other with a dihedral angle of 86.09 (10)°. Intra-molecular O-H⋯O hydrogen bonds between coordinating water mol-ecules and adjacent carboxyl-ate O atoms help to stabilize the mol-ecular structure. In the crystal, weak C-H⋯O hydrogen bonds link the polymeric chains into a three-dimentional supra-molecular network.

Entities:  

Year:  2012        PMID: 22590108      PMCID: PMC3344342          DOI: 10.1107/S1600536812015115

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For niacin, see: Krishnamachari (1974 ▶) and for information on the nicotinic acid derivative N,N-diethyl­nicotinamide, see: Bigoli et al. (1972 ▶). For related structures, see: Hökelek et al. (2009 ▶, 2010 ▶, 2011 ▶); Necefoğlu et al. (2011 ▶); Zaman et al. (2012 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

[Co(C7H4IO2)2(H2O)2] M = 588.97 Orthorhombic, a = 7.5051 (3) Å b = 10.5639 (4) Å c = 21.6723 (9) Å V = 1718.25 (12) Å3 Z = 4 Mo Kα radiation μ = 4.62 mm−1 T = 100 K 0.26 × 0.23 × 0.17 mm

Data collection

Bruker Kappa APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.313, T max = 0.456 30167 measured reflections 4313 independent reflections 4300 reflections with I > 2σ(I) R int = 0.037

Refinement

R[F 2 > 2σ(F 2)] = 0.020 wR(F 2) = 0.051 S = 1.20 4313 reflections 224 parameters 8 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.60 e Å−3 Δρmin = −1.03 e Å−3 Absolute structure: Flack (1983 ▶), 1835 Friedel pairs Flack parameter: 0.016 (19) Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812015115/xu5504sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812015115/xu5504Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Co(C7H4IO2)2(H2O)2]F(000) = 1108
Mr = 588.97Dx = 2.277 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 9972 reflections
a = 7.5051 (3) Åθ = 2.7–28.4°
b = 10.5639 (4) ŵ = 4.62 mm1
c = 21.6723 (9) ÅT = 100 K
V = 1718.25 (12) Å3Block, orange
Z = 40.26 × 0.23 × 0.17 mm
Bruker Kappa APEXII CCD area-detector diffractometer4313 independent reflections
Radiation source: fine-focus sealed tube4300 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.037
φ and ω scansθmax = 28.4°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −10→10
Tmin = 0.313, Tmax = 0.456k = −13→14
30167 measured reflectionsl = −29→28
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.020H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.051w = 1/[σ2(Fo2) + (0.0209P)2 + 2.2878P] where P = (Fo2 + 2Fc2)/3
S = 1.20(Δ/σ)max = 0.002
4313 reflectionsΔρmax = 0.60 e Å3
224 parametersΔρmin = −1.03 e Å3
8 restraintsAbsolute structure: Flack (1983), 1835 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.016 (19)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
I11.14075 (3)0.58295 (2)0.834432 (12)0.02259 (6)
I20.86998 (3)−0.04434 (2)0.858655 (9)0.01608 (6)
Co10.81243 (5)0.25155 (4)0.997594 (19)0.00670 (8)
O11.0232 (3)0.2952 (2)0.86860 (10)0.0128 (5)
O20.7492 (3)0.3161 (2)0.90771 (10)0.0107 (4)
O30.4106 (3)0.0744 (2)0.98386 (11)0.0136 (5)
O40.7100 (3)0.0786 (2)0.98080 (11)0.0122 (4)
O50.5662 (3)0.3202 (2)1.03253 (11)0.0093 (4)
H510.562 (7)0.289 (4)1.0690 (12)0.030 (14)*
H520.561 (7)0.4004 (18)1.037 (2)0.034 (14)*
O60.8845 (3)0.1971 (2)1.08789 (11)0.0148 (5)
H610.993 (3)0.190 (5)1.100 (2)0.021 (12)*
H620.824 (6)0.151 (5)1.113 (2)0.048 (17)*
C10.8667 (5)0.3361 (3)0.86686 (13)0.0104 (5)
C20.8126 (4)0.4134 (3)0.81193 (14)0.0125 (6)
C30.9090 (5)0.5170 (3)0.79051 (15)0.0161 (7)
C40.8484 (6)0.5875 (4)0.74032 (16)0.0229 (8)
H40.91160.66070.72730.027*
C50.6959 (6)0.5502 (5)0.70965 (16)0.0311 (10)
H50.65600.59670.67480.037*
C60.6007 (6)0.4452 (5)0.72940 (19)0.0329 (10)
H60.49690.41920.70780.040*
C70.6571 (5)0.3786 (4)0.78044 (16)0.0201 (7)
H70.58970.30820.79450.024*
C80.5602 (4)0.0274 (3)0.97274 (13)0.0082 (5)
C90.5600 (4)−0.1065 (3)0.94894 (14)0.0081 (5)
C100.6767 (4)−0.1532 (3)0.90444 (13)0.0088 (6)
C110.6674 (4)−0.2780 (3)0.88547 (15)0.0134 (6)
H110.7435−0.30720.85350.016*
C120.5480 (5)−0.3607 (3)0.91279 (16)0.0157 (7)
H120.5450−0.44710.90060.019*
C130.4330 (5)−0.3169 (3)0.95795 (18)0.0183 (7)
H130.3521−0.37330.97740.022*
C140.4365 (5)−0.1903 (3)0.97459 (15)0.0137 (6)
H140.3531−0.15991.00400.016*
U11U22U33U12U13U23
I10.01863 (11)0.01494 (11)0.03419 (13)−0.00281 (9)0.00237 (10)0.00476 (9)
I20.01887 (10)0.01658 (10)0.01281 (9)−0.00775 (9)0.00753 (8)−0.00351 (8)
Co10.00702 (19)0.00527 (16)0.00782 (16)−0.00060 (14)−0.00006 (14)−0.00093 (15)
O10.0111 (11)0.0154 (11)0.0118 (11)0.0016 (9)0.0016 (8)0.0024 (9)
O20.0092 (11)0.0128 (11)0.0102 (10)0.0004 (9)0.0007 (8)0.0018 (8)
O30.0117 (11)0.0071 (10)0.0221 (12)0.0017 (8)0.0011 (8)−0.0025 (9)
O40.0091 (10)0.0069 (10)0.0208 (11)−0.0004 (8)0.0004 (9)−0.0025 (9)
O50.0088 (10)0.0056 (10)0.0135 (11)−0.0002 (8)−0.0002 (8)−0.0014 (8)
O60.0092 (11)0.0205 (12)0.0146 (11)0.0002 (10)−0.0005 (9)0.0039 (9)
C10.0114 (13)0.0107 (13)0.0092 (13)−0.0034 (12)0.0005 (12)−0.0020 (10)
C20.0144 (15)0.0163 (15)0.0067 (13)0.0044 (12)0.0008 (11)−0.0022 (11)
C30.0202 (17)0.0169 (17)0.0111 (14)0.0077 (13)0.0059 (12)0.0005 (12)
C40.032 (2)0.0222 (17)0.0145 (16)0.0163 (17)0.0104 (15)0.0081 (13)
C50.039 (2)0.044 (3)0.0107 (15)0.023 (2)0.0014 (15)0.0072 (16)
C60.028 (2)0.053 (3)0.0177 (17)0.012 (2)−0.0096 (15)−0.0045 (19)
C70.0167 (17)0.0296 (19)0.0139 (15)0.0014 (15)−0.0035 (13)−0.0010 (13)
C80.0106 (13)0.0065 (14)0.0075 (12)0.0013 (11)0.0005 (10)0.0006 (10)
C90.0093 (13)0.0054 (13)0.0096 (13)0.0005 (11)−0.0006 (11)−0.0011 (10)
C100.0101 (14)0.0111 (15)0.0052 (12)−0.0006 (11)0.0000 (10)−0.0003 (10)
C110.0139 (16)0.0139 (15)0.0124 (14)0.0004 (12)0.0018 (12)−0.0059 (11)
C120.0186 (17)0.0083 (15)0.0202 (16)−0.0011 (13)0.0010 (13)−0.0066 (12)
C130.0198 (17)0.0116 (16)0.0235 (17)−0.0066 (14)0.0052 (14)−0.0014 (13)
C140.0161 (15)0.0118 (15)0.0132 (14)−0.0038 (13)0.0063 (12)−0.0041 (12)
I1—C32.102 (4)C3—C41.395 (5)
I2—C102.100 (3)C4—C51.381 (7)
Co1—O22.118 (2)C4—H40.9500
Co1—O3i2.021 (2)C5—C61.387 (7)
Co1—O42.016 (2)C5—H50.9500
Co1—O52.124 (2)C6—C71.377 (5)
Co1—O5i2.151 (2)C6—H60.9500
Co1—O62.110 (2)C7—C21.400 (5)
O1—C11.252 (4)C7—H70.9500
O2—C11.267 (4)C8—C91.506 (4)
O3—Co1ii2.021 (2)C9—C101.393 (4)
O3—C81.251 (4)C9—C141.397 (4)
O4—C81.260 (4)C11—C101.382 (4)
O5—Co1ii2.151 (2)C11—H110.9500
O5—H510.855 (19)C12—C111.385 (5)
O5—H520.855 (18)C12—H120.9500
O6—H610.854 (18)C13—C121.385 (5)
O6—H620.86 (2)C13—H130.9500
C2—C11.499 (4)C14—C131.385 (4)
C3—C21.392 (5)C14—H140.9500
O2—Co1—O591.32 (9)C4—C3—I1116.5 (3)
O2—Co1—O5i91.88 (9)C5—C4—C3119.5 (4)
O3i—Co1—O688.28 (10)C5—C4—H4120.2
O3i—Co1—O288.37 (10)C3—C4—H4120.2
O3i—Co1—O586.32 (9)C4—C5—C6120.5 (3)
O3i—Co1—O5i93.32 (9)C4—C5—H5119.8
O4—Co1—O292.32 (9)C6—C5—H5119.8
O4—Co1—O3i178.57 (10)C7—C6—C5119.8 (4)
O4—Co1—O592.41 (9)C7—C6—H6120.1
O4—Co1—O5i87.92 (9)C5—C6—H6120.1
O4—Co1—O691.04 (10)C6—C7—C2120.9 (4)
O5—Co1—O5i176.77 (4)C6—C7—H7119.5
O6—Co1—O2176.58 (10)C2—C7—H7119.5
O6—Co1—O589.15 (9)O3—C8—O4127.2 (3)
O6—Co1—O5i87.63 (9)O3—C8—C9116.0 (3)
C1—O2—Co1122.7 (2)O4—C8—C9116.8 (3)
C8—O3—Co1ii136.6 (2)C10—C9—C8124.7 (3)
C8—O4—Co1139.0 (2)C10—C9—C14117.9 (3)
Co1—O5—Co1ii122.81 (10)C14—C9—C8117.3 (3)
Co1—O5—H51103 (3)C9—C10—I2124.6 (2)
Co1ii—O5—H5197 (4)C11—C10—I2114.6 (2)
Co1—O5—H52115 (4)C11—C10—C9120.8 (3)
Co1ii—O5—H52110 (4)C10—C11—C12120.5 (3)
H51—O5—H52106 (4)C10—C11—H11119.8
Co1—O6—H61123 (3)C12—C11—H11119.8
Co1—O6—H62127 (4)C11—C12—H12120.2
H61—O6—H62106 (4)C13—C12—C11119.6 (3)
O1—C1—O2125.1 (3)C13—C12—H12120.2
O1—C1—C2117.8 (3)C12—C13—H13120.1
O2—C1—C2117.2 (3)C14—C13—C12119.7 (3)
C3—C2—C1123.5 (3)C14—C13—H13120.1
C3—C2—C7118.5 (3)C9—C14—H14119.3
C7—C2—C1118.0 (3)C13—C14—C9121.4 (3)
C2—C3—I1122.7 (2)C13—C14—H14119.3
C2—C3—C4120.7 (4)
O3i—Co1—O2—C172.6 (2)C4—C3—C2—C1−177.9 (3)
O4—Co1—O2—C1−108.6 (2)C4—C3—C2—C72.4 (5)
O5—Co1—O2—C1158.9 (2)I1—C3—C4—C5−179.4 (3)
O5i—Co1—O2—C1−20.6 (2)C2—C3—C4—C5−3.3 (5)
O2—Co1—O4—C8−70.4 (3)C3—C4—C5—C61.6 (6)
O5—Co1—O4—C821.0 (3)C4—C5—C6—C70.9 (6)
O5i—Co1—O4—C8−162.2 (3)C5—C6—C7—C2−1.7 (6)
O6—Co1—O4—C8110.2 (3)C6—C7—C2—C1−179.6 (3)
O2—Co1—O5—Co1ii63.36 (13)C6—C7—C2—C30.1 (5)
O3i—Co1—O5—Co1ii151.65 (14)O3—C8—C9—C10142.8 (3)
O4—Co1—O5—Co1ii−29.01 (13)O3—C8—C9—C14−38.8 (4)
O6—Co1—O5—Co1ii−120.02 (13)O4—C8—C9—C10−39.0 (4)
Co1—O2—C1—O116.8 (4)O4—C8—C9—C14139.4 (3)
Co1—O2—C1—C2−164.0 (2)C8—C9—C10—I2−2.7 (4)
Co1ii—O3—C8—O414.0 (5)C8—C9—C10—C11179.7 (3)
Co1ii—O3—C8—C9−168.0 (2)C14—C9—C10—I2178.9 (2)
Co1—O4—C8—O3−13.8 (5)C14—C9—C10—C111.4 (5)
Co1—O4—C8—C9168.2 (2)C8—C9—C14—C13−176.5 (3)
C3—C2—C1—O1−51.1 (4)C10—C9—C14—C132.0 (5)
C3—C2—C1—O2129.7 (3)C12—C11—C10—I2178.7 (3)
C7—C2—C1—O1128.6 (3)C12—C11—C10—C9−3.5 (5)
C7—C2—C1—O2−50.7 (4)C13—C12—C11—C102.2 (5)
I1—C3—C2—C1−2.0 (4)C14—C13—C12—C111.1 (6)
I1—C3—C2—C7178.3 (2)C9—C14—C13—C12−3.2 (6)
D—H···AD—HH···AD···AD—H···A
O5—H51···O1ii0.86 (3)1.64 (3)2.486 (3)167 (5)
O6—H61···O2i0.86 (2)1.92 (2)2.742 (3)161 (4)
C4—H4···O1iii0.952.563.364 (4)142
C13—H13···O4iv0.952.583.495 (4)162
Table 1

Selected bond lengths (Å)

Co1—O22.118 (2)
Co1—O3i2.021 (2)
Co1—O42.016 (2)
Co1—O52.124 (2)
Co1—O5i2.151 (2)
Co1—O62.110 (2)

Symmetry code: (i) .

Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O5—H51⋯O1ii0.86 (3)1.64 (3)2.486 (3)167 (5)
O6—H61⋯O2i0.86 (2)1.92 (2)2.742 (3)161 (4)
C4—H4⋯O1iii0.952.563.364 (4)142
C13—H13⋯O4iv0.952.583.495 (4)162

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  9 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Some aspects of copper metabolism in pellagra.

Authors:  K A Krishnamachari
Journal:  Am J Clin Nutr       Date:  1974-02       Impact factor: 7.045

3.  catena-Poly[[(4-formyl-benzoato-κO)(isonicotinamide-κN)zinc(II)]-μ-4-formyl-benzoato-κO:O].

Authors:  Tuncer Hökelek; Filiz Yılmaz; Barış Tercan; Mustafa Sertçelik; Hacali Necefoğlu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-23

4.  catena-Poly[[(4-methyl-benzoato-κO)manganese(II)]-μ-aqua-bis-(μ-4-methyl-benzoato-κO:O')[(4-methyl-benzoato-κO)manganese(II)]-bis-(μ-N,N-diethyl-nicotinamide)-κN:O;O:N].

Authors:  Tuncer Hökelek; Hakan Dal; Barış Tercan; Efdal Cimen; Hacali Necefoğlu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-05

5.  catena-Poly[[bis-(4-methyl-benzoato-κO:O')lead(II)]-μ-nicotinamide-κN:O].

Authors:  Tuncer Hökelek; Hakan Dal; Barış Tercan; Efdal Cimen; Hacali Necefoğlu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-17

6.  Poly[[diaqua-manganese(II)]-bis-(μ-4-fluoro-benzoato-κO:O')].

Authors:  Hacali Necefoğlu; Füreya Elif Ozbek; Vijdan Oztürk; Barış Tercan; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-06-30

7.  catena-Poly[[[bis-(4-ethyl-benzoato-κO,O')lead(II)]-μ-nicotinamide-κN:O] monohydrate].

Authors:  Tuncer Hökelek; Barış Tercan; Ertan Sahin; Vedat Aktaş; Hacali Necefoğlu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-09

8.  catena-Poly[[(μ-3-hy-droxy-benzoato-κO,O:O)(μ-3-hy-droxy-benzoato-κO,O:O)(isonicotinamide-κN)-lead(II)] monohydrate].

Authors:  Ibrahim Göker Zaman; Nagihan Caylak Delibaş; Hacali Necefoğlu; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-02-10

9.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
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1.  catena-Poly[aqua-bis-(μ-3-chloro-benzo-ato-κ(2) O:O')zinc].

Authors:  Nihat Bozkurt; Nefise Dilek; Nagihan Caylak Delibaş; Hacali Necefoğlu; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-06-15
  1 in total

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