| Literature DB >> 24526956 |
Fatih Celik1, Nefise Dilek2, Nagihan Caylak Delibaş3, Hacali Necefoğlu1, Tuncer Hökelek4.
Abstract
In the title polymeric compound, [Cu(C8H5O3)2(C4H4N2)(H2O)2] n , the Cu(II) atom is located on a twofold rotation axis and has a slightly distorted octa-hedral coordination sphere. In the equatorial plane, it is coordinated by two carboxyl-ate O atoms of two symmetry-related monodentate formyl-benzoate anions and by two N atoms of the bridging pyrazine ligand, which is bis-ected by the twofold rotation axis. The axial positions are occupied by two O atoms of the coordinating water mol-ecules. In the formyl-benzoate anion, the carboxyl-ate group is twisted away from the attached benzene ring by 6.2 (2)°, while the benzene and pyrazine rings are oriented at a dihedral angle of 68.91 (8)°. The pyrazine ligands bridge the Cu(II) cations, forming polymeric chains running along the b-axis direction. Strong intra-molecular O-H⋯O hydrogen bonds link the water mol-ecules to the carboxyl-ate O atoms. In the crystal, O-Hwater⋯Owater hydrogen bonds link adjacent chains into layers parallel to the bc plane. The layers are linked via C-Hpyrazine⋯Oform-yl hydrogen bonds, forming a three-dimensional network. There are also weak C-H⋯π inter-actions present.Entities:
Year: 2013 PMID: 24526956 PMCID: PMC3914040 DOI: 10.1107/S1600536813032297
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Cu(C8H5O3)2(C4H4N2)(H2O)2] | |
| Monoclinic, | Mo |
| Hall symbol: -C 2yc | Cell parameters from 9971 reflections |
| θ = 2.4–28.4° | |
| µ = 1.19 mm−1 | |
| β = 93.621 (3)° | Block, blue |
| 0.42 × 0.22 × 0.13 mm | |
| Bruker SMART BREEZE CCD diffractometer | 2398 independent reflections |
| Radiation source: fine-focus sealed tube | 2231 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 28.4°, θmin = 1.9° |
| Absorption correction: multi-scan ( | |
| 14917 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2398 reflections | (Δ/σ)max = 0.001 |
| 150 parameters | Δρmax = 0.47 e Å−3 |
| 2 restraints | Δρmin = −0.30 e Å−3 |
| Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell esds are taken into account in the estimation of distances, angles and torsion angles |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| Cu1 | 0.50000 | 0.56167 (4) | 0.25000 | 0.0226 (1) | |
| O1 | 0.58159 (6) | 0.55545 (17) | 0.19469 (11) | 0.0283 (3) | |
| O2 | 0.63771 (7) | 0.6755 (3) | 0.33131 (11) | 0.0478 (5) | |
| O3 | 0.90018 (8) | 0.6186 (4) | 0.03875 (15) | 0.0643 (7) | |
| O4 | 0.54054 (7) | 0.5818 (3) | 0.43338 (12) | 0.0429 (5) | |
| N1 | 0.50000 | 0.8590 (3) | 0.25000 | 0.0222 (5) | |
| N2 | 0.50000 | 1.2632 (3) | 0.25000 | 0.0228 (5) | |
| C1 | 0.63185 (7) | 0.6123 (2) | 0.24173 (13) | 0.0255 (4) | |
| C2 | 0.68848 (7) | 0.5984 (2) | 0.18010 (13) | 0.0233 (4) | |
| C3 | 0.68624 (8) | 0.5098 (3) | 0.08295 (13) | 0.0278 (4) | |
| C4 | 0.73941 (8) | 0.4934 (3) | 0.02948 (13) | 0.0311 (5) | |
| C5 | 0.79501 (8) | 0.5656 (3) | 0.07299 (15) | 0.0298 (5) | |
| C6 | 0.79729 (8) | 0.6554 (3) | 0.16972 (14) | 0.0322 (5) | |
| C7 | 0.74435 (8) | 0.6718 (3) | 0.22284 (13) | 0.0286 (5) | |
| C8 | 0.85122 (10) | 0.5472 (3) | 0.01458 (19) | 0.0433 (7) | |
| C9 | 0.52244 (8) | 0.9602 (2) | 0.17228 (13) | 0.0263 (5) | |
| C10 | 0.52268 (8) | 1.1618 (2) | 0.17257 (13) | 0.0265 (5) | |
| H3 | 0.64910 | 0.46150 | 0.05390 | 0.0330* | |
| H4 | 0.73790 | 0.43420 | −0.03540 | 0.0370* | |
| H6 | 0.83440 | 0.70420 | 0.19860 | 0.0390* | |
| H7 | 0.74590 | 0.73200 | 0.28750 | 0.0340* | |
| H8 | 0.84820 | 0.47380 | −0.04600 | 0.0520* | |
| H9 | 0.53820 | 0.89410 | 0.11700 | 0.0310* | |
| H10 | 0.53900 | 1.22800 | 0.11770 | 0.0320* | |
| H41 | 0.5464 (15) | 0.485 (3) | 0.465 (2) | 0.065 (10)* | |
| H42 | 0.5738 (10) | 0.609 (5) | 0.414 (2) | 0.064 (9)* |
| Cu1 | 0.0165 (2) | 0.0139 (2) | 0.0382 (2) | 0.0000 | 0.0076 (1) | 0.0000 |
| O1 | 0.0170 (5) | 0.0258 (6) | 0.0428 (7) | −0.0016 (4) | 0.0076 (5) | −0.0036 (5) |
| O2 | 0.0327 (7) | 0.0712 (11) | 0.0413 (8) | −0.0153 (7) | 0.0155 (6) | −0.0173 (7) |
| O3 | 0.0307 (8) | 0.0990 (15) | 0.0650 (11) | −0.0003 (9) | 0.0176 (7) | 0.0074 (11) |
| O4 | 0.0330 (8) | 0.0558 (10) | 0.0408 (8) | −0.0057 (7) | 0.0086 (6) | 0.0119 (7) |
| N1 | 0.0214 (8) | 0.0149 (9) | 0.0308 (9) | 0.0000 | 0.0065 (7) | 0.0000 |
| N2 | 0.0206 (8) | 0.0160 (8) | 0.0322 (9) | 0.0000 | 0.0055 (7) | 0.0000 |
| C1 | 0.0211 (7) | 0.0212 (7) | 0.0350 (8) | −0.0011 (6) | 0.0079 (6) | 0.0000 (6) |
| C2 | 0.0186 (7) | 0.0219 (7) | 0.0298 (8) | 0.0006 (6) | 0.0046 (6) | 0.0021 (6) |
| C3 | 0.0215 (7) | 0.0302 (8) | 0.0316 (8) | −0.0002 (6) | 0.0002 (6) | −0.0008 (7) |
| C4 | 0.0312 (9) | 0.0340 (9) | 0.0284 (8) | 0.0045 (7) | 0.0045 (7) | −0.0018 (7) |
| C5 | 0.0236 (8) | 0.0307 (9) | 0.0359 (9) | 0.0038 (6) | 0.0093 (7) | 0.0044 (7) |
| C6 | 0.0204 (7) | 0.0372 (10) | 0.0391 (9) | −0.0049 (7) | 0.0032 (6) | 0.0000 (8) |
| C7 | 0.0245 (8) | 0.0312 (9) | 0.0305 (8) | −0.0054 (7) | 0.0044 (6) | −0.0046 (7) |
| C8 | 0.0317 (10) | 0.0525 (14) | 0.0475 (11) | 0.0065 (8) | 0.0170 (9) | 0.0027 (9) |
| C9 | 0.0301 (8) | 0.0206 (8) | 0.0293 (8) | 0.0001 (6) | 0.0114 (6) | −0.0016 (6) |
| C10 | 0.0298 (8) | 0.0200 (8) | 0.0308 (8) | 0.0006 (6) | 0.0111 (6) | 0.0029 (6) |
| Cu1—O1 | 1.9547 (13) | C2—C3 | 1.392 (2) |
| Cu1—O4 | 2.4766 (15) | C2—C7 | 1.397 (2) |
| Cu1—N1 | 2.046 (2) | C3—C4 | 1.388 (2) |
| Cu1—N2i | 2.053 (2) | C4—C5 | 1.392 (3) |
| Cu1—O1ii | 1.9547 (13) | C5—C6 | 1.391 (3) |
| Cu1—O4ii | 2.4766 (15) | C5—C8 | 1.482 (3) |
| O1—C1 | 1.278 (2) | C6—C7 | 1.381 (2) |
| O2—C1 | 1.234 (2) | C9—C10 | 1.3869 (19) |
| O3—C8 | 1.196 (3) | C3—H3 | 0.9300 |
| O4—H42 | 0.80 (2) | C4—H4 | 0.9300 |
| O4—H41 | 0.79 (2) | C6—H6 | 0.9300 |
| N1—C9ii | 1.3382 (19) | C7—H7 | 0.9300 |
| N1—C9 | 1.3382 (19) | C8—H8 | 0.9300 |
| N2—C10 | 1.3382 (19) | C9—H9 | 0.9300 |
| N2—C10ii | 1.3382 (19) | C10—H10 | 0.9300 |
| C1—C2 | 1.511 (2) | ||
| O1—Cu1—O4 | 94.21 (5) | C3—C2—C7 | 119.60 (15) |
| O1—Cu1—N1 | 91.25 (4) | C1—C2—C7 | 119.15 (14) |
| O1—Cu1—N2i | 88.75 (4) | C1—C2—C3 | 121.23 (14) |
| O1—Cu1—O1ii | 177.49 (5) | C2—C3—C4 | 120.02 (16) |
| O1—Cu1—O4ii | 85.93 (5) | C3—C4—C5 | 120.01 (16) |
| O4—Cu1—N1 | 86.80 (5) | C4—C5—C6 | 120.08 (16) |
| O4—Cu1—N2i | 93.21 (5) | C4—C5—C8 | 119.21 (18) |
| O1ii—Cu1—O4 | 85.93 (5) | C6—C5—C8 | 120.71 (17) |
| O4—Cu1—O4ii | 173.59 (7) | C5—C6—C7 | 119.87 (17) |
| N1—Cu1—N2i | 180.00 | C2—C7—C6 | 120.41 (16) |
| O1ii—Cu1—N1 | 91.25 (4) | O3—C8—C5 | 125.6 (2) |
| O4ii—Cu1—N1 | 86.80 (5) | N1—C9—C10 | 121.31 (16) |
| O1ii—Cu1—N2i | 88.75 (4) | N2—C10—C9 | 121.45 (16) |
| O4ii—Cu1—N2i | 93.21 (5) | C2—C3—H3 | 120.00 |
| O1ii—Cu1—O4ii | 94.21 (5) | C4—C3—H3 | 120.00 |
| Cu1—O1—C1 | 126.09 (12) | C3—C4—H4 | 120.00 |
| Cu1—O4—H41 | 119.0 (18) | C5—C4—H4 | 120.00 |
| Cu1—O4—H42 | 89.4 (18) | C5—C6—H6 | 120.00 |
| H41—O4—H42 | 104 (3) | C7—C6—H6 | 120.00 |
| C9—N1—C9ii | 117.30 (18) | C2—C7—H7 | 120.00 |
| Cu1—N1—C9 | 121.35 (10) | C6—C7—H7 | 120.00 |
| Cu1—N1—C9ii | 121.35 (10) | O3—C8—H8 | 117.00 |
| Cu1iii—N2—C10 | 121.42 (10) | C5—C8—H8 | 117.00 |
| C10—N2—C10ii | 117.16 (18) | N1—C9—H9 | 119.00 |
| Cu1iii—N2—C10ii | 121.42 (10) | C10—C9—H9 | 119.00 |
| O1—C1—O2 | 125.98 (16) | N2—C10—H10 | 119.00 |
| O2—C1—C2 | 118.42 (15) | C9—C10—H10 | 119.00 |
| O1—C1—C2 | 115.60 (14) | ||
| O4—Cu1—O1—C1 | −20.13 (13) | O1—C1—C2—C7 | 174.99 (15) |
| N1—Cu1—O1—C1 | 66.75 (12) | O2—C1—C2—C3 | 173.20 (18) |
| N2i—Cu1—O1—C1 | −113.26 (12) | O2—C1—C2—C7 | −5.2 (2) |
| O4ii—Cu1—O1—C1 | 153.44 (13) | C1—C2—C3—C4 | −177.90 (16) |
| O1—Cu1—N1—C9 | 39.77 (10) | C7—C2—C3—C4 | 0.5 (3) |
| O1—Cu1—N1—C9ii | −140.23 (10) | C1—C2—C7—C6 | 177.88 (16) |
| O4—Cu1—N1—C9 | 133.92 (9) | C3—C2—C7—C6 | −0.6 (3) |
| O4—Cu1—N1—C9ii | −46.08 (9) | C2—C3—C4—C5 | 0.0 (3) |
| O1ii—Cu1—N1—C9 | −140.23 (10) | C3—C4—C5—C6 | −0.4 (3) |
| O4ii—Cu1—N1—C9 | −46.08 (9) | C3—C4—C5—C8 | −179.83 (19) |
| Cu1—O1—C1—O2 | 2.3 (2) | C4—C5—C6—C7 | 0.4 (3) |
| Cu1—O1—C1—C2 | −177.93 (9) | C8—C5—C6—C7 | 179.77 (19) |
| Cu1—N1—C9—C10 | −179.70 (12) | C4—C5—C8—O3 | 172.6 (2) |
| C9ii—N1—C9—C10 | 0.3 (2) | C6—C5—C8—O3 | −6.8 (4) |
| Cu1iii—N2—C10—C9 | −179.70 (12) | C5—C6—C7—C2 | 0.1 (3) |
| C10ii—N2—C10—C9 | 0.3 (2) | N1—C9—C10—N2 | −0.6 (2) |
| O1—C1—C2—C3 | −6.6 (2) |
| H··· | ||||
| O4—H42···O2 | 0.80 (2) | 1.86 (2) | 2.640 (2) | 163 (3) |
| O4—H41···O4iv | 0.79 (2) | 2.41 (3) | 2.778 (2) | 110 (3) |
| C9—H9···O3v | 0.93 | 2.49 | 3.335 (3) | 152 |
| C7—H7··· | 0.93 | 2.66 | 3.433 (2) | 141 |
Hydrogen-bond geometry (Å, °)
Cg is the centroid of the C2–C7 ring.
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O4—H42⋯O2 | 0.80 (2) | 1.86 (2) | 2.640 (2) | 163 (3) |
| O4—H41⋯O4i | 0.79 (2) | 2.41 (3) | 2.778 (2) | 110 (3) |
| C9—H9⋯O3ii | 0.93 | 2.49 | 3.335 (3) | 152 |
| C7—H7⋯ | 0.93 | 2.66 | 3.433 (2) | 141 |
Symmetry codes: (i) ; (ii) ; (iii) .