Literature DB >> 24526956

catena-Poly[[di-aqua-bis-(4-formyl-benzoato-κO (1))copper(II)]-μ-pyrazine-κ(2) N:N'].

Fatih Celik1, Nefise Dilek2, Nagihan Caylak Delibaş3, Hacali Necefoğlu1, Tuncer Hökelek4.   

Abstract

In the title polymeric compound, [Cu(C8H5O3)2(C4H4N2)(H2O)2] n , the Cu(II) atom is located on a twofold rotation axis and has a slightly distorted octa-hedral coordination sphere. In the equatorial plane, it is coordinated by two carboxyl-ate O atoms of two symmetry-related monodentate formyl-benzoate anions and by two N atoms of the bridging pyrazine ligand, which is bis-ected by the twofold rotation axis. The axial positions are occupied by two O atoms of the coordinating water mol-ecules. In the formyl-benzoate anion, the carboxyl-ate group is twisted away from the attached benzene ring by 6.2 (2)°, while the benzene and pyrazine rings are oriented at a dihedral angle of 68.91 (8)°. The pyrazine ligands bridge the Cu(II) cations, forming polymeric chains running along the b-axis direction. Strong intra-molecular O-H⋯O hydrogen bonds link the water mol-ecules to the carboxyl-ate O atoms. In the crystal, O-Hwater⋯Owater hydrogen bonds link adjacent chains into layers parallel to the bc plane. The layers are linked via C-Hpyrazine⋯Oform-yl hydrogen bonds, forming a three-dimensional network. There are also weak C-H⋯π inter-actions present.

Entities:  

Year:  2013        PMID: 24526956      PMCID: PMC3914040          DOI: 10.1107/S1600536813032297

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For structural functions and coordination relationships of aryl­carboxyl­ate ions in transition metal complexes of benzoic acid derivatives, see: Nadzhafov et al. (1981 ▶); Shnulin et al. (1981 ▶). For applications of transition metal complexes with biochemical mol­ecules in biological systems, see: Antolini et al. (1982 ▶). Some benzoic acid derivatives, such as 4-amino­benzoic acid, have been extensively reported in coordination chemistry, as bifunctional organic ligands, due to the variety of their coordination modes, see: Chen & Chen (2002 ▶); Amiraslanov et al. (1979 ▶); Hauptmann et al. (2000 ▶). For a related structure involving 4-formyl­benzoate, see: Hökelek et al. (2009 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

[Cu(C8H5O3)2(C4H4N2)(H2O)2] M = 477.90 Monoclinic, a = 21.7514 (4) Å b = 6.8794 (2) Å c = 12.9048 (3) Å β = 93.621 (3)° V = 1927.17 (8) Å3 Z = 4 Mo Kα radiation μ = 1.19 mm−1 T = 294 K 0.42 × 0.22 × 0.13 mm

Data collection

Bruker SMART BREEZE CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2012 ▶) T min = 0.738, T max = 0.857 14917 measured reflections 2398 independent reflections 2231 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.028 wR(F 2) = 0.089 S = 1.14 2398 reflections 150 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.47 e Å−3 Δρmin = −0.30 e Å−3 Data collection: APEX2 (Bruker, 2012 ▶); cell refinement: SAINT (Bruker, 2012 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813032297/su2669sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813032297/su2669Isup2.hkl Additional supporting information: crystallographic information; 3D view; checkCIF report
[Cu(C8H5O3)2(C4H4N2)(H2O)2]F(000) = 980
Mr = 477.90Dx = 1.647 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 9971 reflections
a = 21.7514 (4) Åθ = 2.4–28.4°
b = 6.8794 (2) ŵ = 1.19 mm1
c = 12.9048 (3) ÅT = 294 K
β = 93.621 (3)°Block, blue
V = 1927.17 (8) Å30.42 × 0.22 × 0.13 mm
Z = 4
Bruker SMART BREEZE CCD diffractometer2398 independent reflections
Radiation source: fine-focus sealed tube2231 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.029
φ and ω scansθmax = 28.4°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Bruker, 2012)h = −28→27
Tmin = 0.738, Tmax = 0.857k = −8→9
14917 measured reflectionsl = −17→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.028Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.089H atoms treated by a mixture of independent and constrained refinement
S = 1.14w = 1/[σ2(Fo2) + (0.0478P)2 + 1.6638P] where P = (Fo2 + 2Fc2)/3
2398 reflections(Δ/σ)max = 0.001
150 parametersΔρmax = 0.47 e Å3
2 restraintsΔρmin = −0.30 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell esds are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cu10.500000.56167 (4)0.250000.0226 (1)
O10.58159 (6)0.55545 (17)0.19469 (11)0.0283 (3)
O20.63771 (7)0.6755 (3)0.33131 (11)0.0478 (5)
O30.90018 (8)0.6186 (4)0.03875 (15)0.0643 (7)
O40.54054 (7)0.5818 (3)0.43338 (12)0.0429 (5)
N10.500000.8590 (3)0.250000.0222 (5)
N20.500001.2632 (3)0.250000.0228 (5)
C10.63185 (7)0.6123 (2)0.24173 (13)0.0255 (4)
C20.68848 (7)0.5984 (2)0.18010 (13)0.0233 (4)
C30.68624 (8)0.5098 (3)0.08295 (13)0.0278 (4)
C40.73941 (8)0.4934 (3)0.02948 (13)0.0311 (5)
C50.79501 (8)0.5656 (3)0.07299 (15)0.0298 (5)
C60.79729 (8)0.6554 (3)0.16972 (14)0.0322 (5)
C70.74435 (8)0.6718 (3)0.22284 (13)0.0286 (5)
C80.85122 (10)0.5472 (3)0.01458 (19)0.0433 (7)
C90.52244 (8)0.9602 (2)0.17228 (13)0.0263 (5)
C100.52268 (8)1.1618 (2)0.17257 (13)0.0265 (5)
H30.649100.461500.053900.0330*
H40.737900.43420−0.035400.0370*
H60.834400.704200.198600.0390*
H70.745900.732000.287500.0340*
H80.848200.47380−0.046000.0520*
H90.538200.894100.117000.0310*
H100.539001.228000.117700.0320*
H410.5464 (15)0.485 (3)0.465 (2)0.065 (10)*
H420.5738 (10)0.609 (5)0.414 (2)0.064 (9)*
U11U22U33U12U13U23
Cu10.0165 (2)0.0139 (2)0.0382 (2)0.00000.0076 (1)0.0000
O10.0170 (5)0.0258 (6)0.0428 (7)−0.0016 (4)0.0076 (5)−0.0036 (5)
O20.0327 (7)0.0712 (11)0.0413 (8)−0.0153 (7)0.0155 (6)−0.0173 (7)
O30.0307 (8)0.0990 (15)0.0650 (11)−0.0003 (9)0.0176 (7)0.0074 (11)
O40.0330 (8)0.0558 (10)0.0408 (8)−0.0057 (7)0.0086 (6)0.0119 (7)
N10.0214 (8)0.0149 (9)0.0308 (9)0.00000.0065 (7)0.0000
N20.0206 (8)0.0160 (8)0.0322 (9)0.00000.0055 (7)0.0000
C10.0211 (7)0.0212 (7)0.0350 (8)−0.0011 (6)0.0079 (6)0.0000 (6)
C20.0186 (7)0.0219 (7)0.0298 (8)0.0006 (6)0.0046 (6)0.0021 (6)
C30.0215 (7)0.0302 (8)0.0316 (8)−0.0002 (6)0.0002 (6)−0.0008 (7)
C40.0312 (9)0.0340 (9)0.0284 (8)0.0045 (7)0.0045 (7)−0.0018 (7)
C50.0236 (8)0.0307 (9)0.0359 (9)0.0038 (6)0.0093 (7)0.0044 (7)
C60.0204 (7)0.0372 (10)0.0391 (9)−0.0049 (7)0.0032 (6)0.0000 (8)
C70.0245 (8)0.0312 (9)0.0305 (8)−0.0054 (7)0.0044 (6)−0.0046 (7)
C80.0317 (10)0.0525 (14)0.0475 (11)0.0065 (8)0.0170 (9)0.0027 (9)
C90.0301 (8)0.0206 (8)0.0293 (8)0.0001 (6)0.0114 (6)−0.0016 (6)
C100.0298 (8)0.0200 (8)0.0308 (8)0.0006 (6)0.0111 (6)0.0029 (6)
Cu1—O11.9547 (13)C2—C31.392 (2)
Cu1—O42.4766 (15)C2—C71.397 (2)
Cu1—N12.046 (2)C3—C41.388 (2)
Cu1—N2i2.053 (2)C4—C51.392 (3)
Cu1—O1ii1.9547 (13)C5—C61.391 (3)
Cu1—O4ii2.4766 (15)C5—C81.482 (3)
O1—C11.278 (2)C6—C71.381 (2)
O2—C11.234 (2)C9—C101.3869 (19)
O3—C81.196 (3)C3—H30.9300
O4—H420.80 (2)C4—H40.9300
O4—H410.79 (2)C6—H60.9300
N1—C9ii1.3382 (19)C7—H70.9300
N1—C91.3382 (19)C8—H80.9300
N2—C101.3382 (19)C9—H90.9300
N2—C10ii1.3382 (19)C10—H100.9300
C1—C21.511 (2)
O1—Cu1—O494.21 (5)C3—C2—C7119.60 (15)
O1—Cu1—N191.25 (4)C1—C2—C7119.15 (14)
O1—Cu1—N2i88.75 (4)C1—C2—C3121.23 (14)
O1—Cu1—O1ii177.49 (5)C2—C3—C4120.02 (16)
O1—Cu1—O4ii85.93 (5)C3—C4—C5120.01 (16)
O4—Cu1—N186.80 (5)C4—C5—C6120.08 (16)
O4—Cu1—N2i93.21 (5)C4—C5—C8119.21 (18)
O1ii—Cu1—O485.93 (5)C6—C5—C8120.71 (17)
O4—Cu1—O4ii173.59 (7)C5—C6—C7119.87 (17)
N1—Cu1—N2i180.00C2—C7—C6120.41 (16)
O1ii—Cu1—N191.25 (4)O3—C8—C5125.6 (2)
O4ii—Cu1—N186.80 (5)N1—C9—C10121.31 (16)
O1ii—Cu1—N2i88.75 (4)N2—C10—C9121.45 (16)
O4ii—Cu1—N2i93.21 (5)C2—C3—H3120.00
O1ii—Cu1—O4ii94.21 (5)C4—C3—H3120.00
Cu1—O1—C1126.09 (12)C3—C4—H4120.00
Cu1—O4—H41119.0 (18)C5—C4—H4120.00
Cu1—O4—H4289.4 (18)C5—C6—H6120.00
H41—O4—H42104 (3)C7—C6—H6120.00
C9—N1—C9ii117.30 (18)C2—C7—H7120.00
Cu1—N1—C9121.35 (10)C6—C7—H7120.00
Cu1—N1—C9ii121.35 (10)O3—C8—H8117.00
Cu1iii—N2—C10121.42 (10)C5—C8—H8117.00
C10—N2—C10ii117.16 (18)N1—C9—H9119.00
Cu1iii—N2—C10ii121.42 (10)C10—C9—H9119.00
O1—C1—O2125.98 (16)N2—C10—H10119.00
O2—C1—C2118.42 (15)C9—C10—H10119.00
O1—C1—C2115.60 (14)
O4—Cu1—O1—C1−20.13 (13)O1—C1—C2—C7174.99 (15)
N1—Cu1—O1—C166.75 (12)O2—C1—C2—C3173.20 (18)
N2i—Cu1—O1—C1−113.26 (12)O2—C1—C2—C7−5.2 (2)
O4ii—Cu1—O1—C1153.44 (13)C1—C2—C3—C4−177.90 (16)
O1—Cu1—N1—C939.77 (10)C7—C2—C3—C40.5 (3)
O1—Cu1—N1—C9ii−140.23 (10)C1—C2—C7—C6177.88 (16)
O4—Cu1—N1—C9133.92 (9)C3—C2—C7—C6−0.6 (3)
O4—Cu1—N1—C9ii−46.08 (9)C2—C3—C4—C50.0 (3)
O1ii—Cu1—N1—C9−140.23 (10)C3—C4—C5—C6−0.4 (3)
O4ii—Cu1—N1—C9−46.08 (9)C3—C4—C5—C8−179.83 (19)
Cu1—O1—C1—O22.3 (2)C4—C5—C6—C70.4 (3)
Cu1—O1—C1—C2−177.93 (9)C8—C5—C6—C7179.77 (19)
Cu1—N1—C9—C10−179.70 (12)C4—C5—C8—O3172.6 (2)
C9ii—N1—C9—C100.3 (2)C6—C5—C8—O3−6.8 (4)
Cu1iii—N2—C10—C9−179.70 (12)C5—C6—C7—C20.1 (3)
C10ii—N2—C10—C90.3 (2)N1—C9—C10—N2−0.6 (2)
O1—C1—C2—C3−6.6 (2)
D—H···AD—HH···AD···AD—H···A
O4—H42···O20.80 (2)1.86 (2)2.640 (2)163 (3)
O4—H41···O4iv0.79 (2)2.41 (3)2.778 (2)110 (3)
C9—H9···O3v0.932.493.335 (3)152
C7—H7···Cgvi0.932.663.433 (2)141
Table 1

Hydrogen-bond geometry (Å, °)

Cg is the centroid of the C2–C7 ring.

D—H⋯A D—HH⋯A DA D—H⋯A
O4—H42⋯O20.80 (2)1.86 (2)2.640 (2)163 (3)
O4—H41⋯O4i 0.79 (2)2.41 (3)2.778 (2)110 (3)
C9—H9⋯O3ii 0.932.493.335 (3)152
C7—H7⋯Cg iii 0.932.663.433 (2)141

Symmetry codes: (i) ; (ii) ; (iii) .

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