Literature DB >> 24764828

catena-Poly[[di-aqua-bis-(4-formyl-benzo-ato-κO (1))nickel(II)]-μ-pyrazine-κ(2) N:N'].

Fatih Celik1, Nefise Dilek2, Nagihan Caylak Delibaş3, Hacali Necefoğlu1, Tuncer Hökelek4.   

Abstract

In the title polymeric compound, [Ni(C8H5O3)2(C4H4N2)(H2O)2] n , the Ni(II) atom is located on a twofold rotation axis and has a slightly distorted octa-hedral coordination sphere. In the equatorial plane, it is coordinated by two carboxyl-ate O atoms of two symmetry-related monodentate formyl-benzoate anions and by two N atoms of the bridging pyrazine ligand, which is bis-ected by the twofold rotation axis. The axial positions are occupied by two O atoms of the coordinating water mol-ecules. In the formyl-benzoate anion, the carboxyl-ate group is twisted away from the attached benzene ring by 7.0 (6)°, while the benzene and pyrazine rings are oriented at a dihedral angle of 66.2 (3)°. The pyrazine ligands bridge the Ni(II) cations, forming polymeric chains running along the b-axis direction. Intra-molecular O-H⋯O hydrogen bonds link the water ligands to the carboxyl-ate O atoms. In the crystal, water-water O-H⋯O hydrogen bonds link adjacent chains into layers parallel to the bc plane. Pyrazine-formyl C-H⋯O hydrogen bonds link the layers, forming a three-dimensional network. There are also weak C-H⋯π inter-actions present. The title compound is isotypic with the copper(II) complex [Çelik et al. (2014a). Acta Cryst. E70, m4-m5].

Entities:  

Year:  2014        PMID: 24764828      PMCID: PMC3998267          DOI: 10.1107/S160053681400155X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structural functions and coordination relationships of the aryl­carboxyl­ate ion in transition-metal complexes of benzoic acid derivatives, see: Nadzhafov et al. (1981 ▶); Shnulin et al. (1981 ▶). For applications of transition-metal complexes with biochemical mol­ecules in biological systems, see: Antolini et al. (1982 ▶). Some benzoic acid derivatives, such as 4-amino­benzoic acid, have been extensively reported in coordination chemistry, as bifunctional organic ligands, due to the varieties of their coordination modes, see: Chen & Chen (2002 ▶); Amiraslanov et al. (1979 ▶); Hauptmann et al. (2000 ▶). For the isotypic copper(II) complex, see: Çelik et al. (2014a ▶). For other related structures involving 4-formyl­benzoate, see: Çelik et al. (2014b ▶); Hökelek et al. (2009 ▶). For standard bond lengths, see: Allen et al. (1987 ▶).

Experimental

Crystal data

[Ni(C8H5O3)2(C4H4N2)(H2O)2] M = 473.07 Monoclinic, a = 22.1032 (5) Å b = 6.9925 (2) Å c = 12.3366 (3) Å β = 94.160 (3)° V = 1901.68 (8) Å3 Z = 4 Mo Kα radiation μ = 1.08 mm−1 T = 296 K 0.48 × 0.23 × 0.14 mm

Data collection

Bruker SMART BREEZE CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2012 ▶) T min = 0.743, T max = 0.860 9913 measured reflections 1717 independent reflections 1554 reflections with I > 2σ(I) R int = 0.070

Refinement

R[F 2 > 2σ(F 2)] = 0.079 wR(F 2) = 0.209 S = 1.16 1717 reflections 150 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 2.49 e Å−3 Δρmin = −1.05 e Å−3 Data collection: APEX2 (Bruker, 2012 ▶); cell refinement: SAINT (Bruker, 2012 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S160053681400155X/su2690sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681400155X/su2690Isup2.hkl CCDC reference: Additional supporting information: crystallographic information; 3D view; checkCIF report
[Ni(C8H5O3)2(C4H4N2)(H2O)2]F(000) = 976
Mr = 473.07Dx = 1.652 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 5837 reflections
a = 22.1032 (5) Åθ = 3.1–28.3°
b = 6.9925 (2) ŵ = 1.08 mm1
c = 12.3366 (3) ÅT = 296 K
β = 94.160 (3)°Prism, blue
V = 1901.68 (8) Å30.48 × 0.23 × 0.14 mm
Z = 4
Bruker SMART BREEZE CCD diffractometer1717 independent reflections
Radiation source: fine-focus sealed tube1554 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.070
φ and ω scansθmax = 25.3°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Bruker, 2012)h = −26→26
Tmin = 0.743, Tmax = 0.860k = −8→8
9913 measured reflectionsl = −14→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.079Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.209H atoms treated by a mixture of independent and constrained refinement
S = 1.16w = 1/[σ2(Fo2) + (0.1238P)2 + 9.9995P] where P = (Fo2 + 2Fc2)/3
1717 reflections(Δ/σ)max < 0.001
150 parametersΔρmax = 2.49 e Å3
2 restraintsΔρmin = −1.05 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell esds are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Ni10.000000.44790 (12)0.250000.0222 (3)
O10.13672 (19)0.3246 (7)0.3338 (3)0.0435 (14)
O20.08397 (17)0.4511 (5)0.1900 (3)0.0294 (11)
O30.3999 (2)0.3724 (9)0.0460 (4)0.0614 (19)
O40.0372 (2)0.4332 (6)0.4119 (3)0.0342 (12)
N10.000000.1464 (8)0.250000.0242 (17)
N20.000000.7500 (8)0.250000.0260 (19)
C10.1321 (2)0.3907 (7)0.2394 (5)0.0277 (16)
C20.1890 (2)0.3983 (7)0.1787 (5)0.0284 (16)
C30.1889 (3)0.4908 (8)0.0787 (5)0.0300 (17)
C40.2420 (3)0.5042 (9)0.0271 (5)0.0320 (17)
C50.2955 (3)0.4294 (8)0.0736 (5)0.0339 (17)
C60.2958 (3)0.3342 (8)0.1733 (5)0.0338 (17)
C70.2424 (2)0.3196 (8)0.2243 (5)0.0290 (17)
C80.3520 (3)0.4471 (10)0.0178 (6)0.045 (2)
C90.0252 (3)0.0463 (7)0.1723 (5)0.0290 (17)
C100.0250 (2)0.8494 (7)0.1733 (4)0.0280 (17)
H30.153200.543200.047000.0360*
H40.241700.56450−0.040100.0380*
H60.331400.281300.204800.0410*
H70.242400.255900.290400.0350*
H80.350700.52240−0.044500.0540*
H90.043100.110800.117000.0350*
H100.043000.784000.118400.0340*
H410.040 (4)0.545 (5)0.430 (7)0.06 (3)*
H420.0721 (18)0.396 (13)0.407 (7)0.07 (3)*
U11U22U33U12U13U23
Ni10.0321 (6)0.0093 (5)0.0253 (6)0.00000.0022 (4)0.0000
O10.046 (2)0.049 (3)0.036 (2)0.008 (2)0.0059 (18)0.012 (2)
O20.032 (2)0.0188 (19)0.038 (2)0.0020 (14)0.0065 (16)0.0009 (16)
O30.045 (3)0.085 (4)0.055 (3)0.001 (3)0.010 (2)−0.006 (3)
O40.047 (2)0.031 (2)0.024 (2)0.0063 (19)−0.0012 (17)−0.0034 (17)
N10.036 (3)0.011 (3)0.026 (3)0.00000.005 (2)0.0000
N20.034 (3)0.006 (3)0.038 (4)0.00000.003 (3)0.0000
C10.039 (3)0.012 (2)0.032 (3)−0.002 (2)0.002 (2)0.000 (2)
C20.040 (3)0.013 (2)0.032 (3)−0.002 (2)0.002 (2)−0.004 (2)
C30.036 (3)0.022 (3)0.031 (3)0.000 (2)−0.004 (2)−0.002 (2)
C40.047 (3)0.023 (3)0.026 (3)−0.006 (2)0.003 (2)0.000 (2)
C50.040 (3)0.026 (3)0.036 (3)−0.005 (2)0.004 (2)−0.007 (2)
C60.036 (3)0.027 (3)0.038 (3)0.005 (2)0.001 (2)−0.002 (2)
C70.039 (3)0.021 (3)0.027 (3)0.005 (2)0.003 (2)0.002 (2)
C80.050 (4)0.044 (4)0.043 (4)−0.007 (3)0.008 (3)−0.002 (3)
C90.045 (3)0.017 (3)0.026 (3)−0.002 (2)0.009 (2)0.002 (2)
C100.041 (3)0.016 (3)0.028 (3)0.000 (2)0.010 (2)−0.004 (2)
Ni1—O22.048 (4)C2—C31.393 (8)
Ni1—O42.107 (4)C2—C71.384 (7)
Ni1—N12.108 (6)C3—C41.378 (9)
Ni1—N22.112 (6)C4—C51.379 (9)
Ni1—O2i2.048 (4)C5—C61.398 (9)
Ni1—O4i2.107 (4)C5—C81.474 (9)
O1—C11.250 (7)C6—C71.381 (8)
O2—C11.260 (6)C9—C10ii1.377 (7)
O3—C81.209 (8)C3—H30.9300
O4—H420.82 (5)C4—H40.9300
O4—H410.81 (4)C6—H60.9300
N1—C9i1.340 (7)C7—H70.9300
N1—C91.340 (7)C8—H80.9300
N2—C101.327 (6)C9—H90.9300
N2—C10i1.327 (6)C10—H100.9300
C1—C21.511 (7)
O2—Ni1—O492.38 (16)C3—C2—C7119.4 (5)
O2—Ni1—N190.63 (10)C1—C2—C7120.0 (5)
O2—Ni1—N289.37 (10)C1—C2—C3120.5 (5)
O2—Ni1—O2i178.75 (15)C2—C3—C4119.6 (6)
O2—Ni1—O4i87.68 (16)C3—C4—C5121.0 (6)
O4—Ni1—N187.20 (12)C4—C5—C6119.7 (6)
O4—Ni1—N292.80 (12)C4—C5—C8120.2 (6)
O2i—Ni1—O487.68 (16)C6—C5—C8120.0 (6)
O4—Ni1—O4i174.41 (17)C5—C6—C7119.1 (6)
N1—Ni1—N2180.00 (1)C2—C7—C6121.2 (6)
O2i—Ni1—N190.63 (10)O3—C8—C5125.7 (7)
O4i—Ni1—N187.20 (12)N1—C9—C10ii120.9 (5)
O2i—Ni1—N289.37 (10)N2—C10—C9iii122.2 (5)
O4i—Ni1—N292.80 (12)C2—C3—H3120.00
O2i—Ni1—O4i92.38 (16)C4—C3—H3120.00
Ni1—O2—C1125.3 (4)C3—C4—H4119.00
Ni1—O4—H41103 (6)C5—C4—H4120.00
Ni1—O4—H42105 (6)C5—C6—H6120.00
H41—O4—H42106 (9)C7—C6—H6120.00
C9—N1—C9i117.0 (5)C2—C7—H7120.00
Ni1—N1—C9121.5 (3)C6—C7—H7119.00
Ni1—N1—C9i121.5 (3)O3—C8—H8117.00
Ni1—N2—C10121.6 (3)C5—C8—H8117.00
Ni1—N2—C10i121.6 (3)N1—C9—H9120.00
C10—N2—C10i116.8 (5)C10ii—C9—H9120.00
O1—C1—O2125.7 (5)N2—C10—H10119.00
O2—C1—C2116.9 (5)C9iii—C10—H10119.00
O1—C1—C2117.4 (4)
O4—Ni1—O2—C122.0 (4)Ni1—N1—C9—C10ii179.9 (4)
N1—Ni1—O2—C1−65.3 (4)Ni1—N2—C10—C9iii179.9 (4)
N2—Ni1—O2—C1114.7 (4)O1—C1—C2—C3−172.2 (5)
O4i—Ni1—O2—C1−152.5 (4)O1—C1—C2—C75.2 (8)
O2—Ni1—N1—C9−35.6 (3)O2—C1—C2—C38.0 (7)
O2—Ni1—N1—C9i144.4 (3)O2—C1—C2—C7−174.5 (5)
O4—Ni1—N1—C9−128.0 (3)C1—C2—C3—C4176.9 (5)
O4—Ni1—N1—C9i52.0 (3)C7—C2—C3—C4−0.6 (8)
O2i—Ni1—N1—C9144.4 (3)C1—C2—C7—C6−176.3 (5)
O4i—Ni1—N1—C952.0 (3)C3—C2—C7—C61.2 (8)
O2—Ni1—N2—C1035.5 (3)C2—C3—C4—C5−0.8 (9)
O2—Ni1—N2—C10i−144.5 (3)C3—C4—C5—C61.6 (9)
O4—Ni1—N2—C10127.9 (3)C3—C4—C5—C8−179.3 (6)
O4—Ni1—N2—C10i−52.1 (3)C4—C5—C6—C7−1.0 (9)
O2i—Ni1—N2—C10−144.5 (3)C8—C5—C6—C7179.9 (6)
O4i—Ni1—N2—C10−52.1 (3)C4—C5—C8—O3−172.9 (7)
Ni1—O2—C1—O1−2.3 (8)C6—C5—C8—O36.3 (10)
Ni1—O2—C1—C2177.5 (3)C5—C6—C7—C2−0.4 (9)
D—H···AD—HH···AD···AD—H···A
O4—H42···O10.82 (5)1.81 (6)2.579 (6)155 (8)
O4—H41···O3iv0.82 (2)2.65 (5)3.395 (8)152 (8)
C9—H9···O3v0.932.453.311 (8)154
C7—H7···Cg1vi0.932.623.395 (6)141
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C2–C7 ring.

D—H⋯A D—HH⋯A DA D—H⋯A
O4—H42⋯O10.82 (5)1.81 (6)2.579 (6)155 (8)
O4—H41⋯O3i 0.82 (2)2.65 (5)3.395 (8)152 (8)
C9—H9⋯O3ii 0.932.453.311 (8)154
C7—H7⋯Cg1iii 0.932.623.395 (6)141

Symmetry codes: (i) ; (ii) ; (iii) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  catena-Poly[[(4-formyl-benzoato-κO)(isonicotinamide-κN)zinc(II)]-μ-4-formyl-benzoato-κO:O].

Authors:  Tuncer Hökelek; Filiz Yılmaz; Barış Tercan; Mustafa Sertçelik; Hacali Necefoğlu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-23

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20

4.  catena-Poly[[di-aqua-bis-(4-formyl-benzoato-κO (1))copper(II)]-μ-pyrazine-κ(2) N:N'].

Authors:  Fatih Celik; Nefise Dilek; Nagihan Caylak Delibaş; Hacali Necefoğlu; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-12-07
  4 in total

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