| Literature DB >> 24764828 |
Fatih Celik1, Nefise Dilek2, Nagihan Caylak Delibaş3, Hacali Necefoğlu1, Tuncer Hökelek4.
Abstract
In the title polymeric compound, [Ni(C8H5O3)2(C4H4N2)(H2O)2] n , the Ni(II) atom is located on a twofold rotation axis and has a slightly distorted octa-hedral coordination sphere. In the equatorial plane, it is coordinated by two carboxyl-ate O atoms of two symmetry-related monodentate formyl-benzoate anions and by two N atoms of the bridging pyrazine ligand, which is bis-ected by the twofold rotation axis. The axial positions are occupied by two O atoms of the coordinating water mol-ecules. In the formyl-benzoate anion, the carboxyl-ate group is twisted away from the attached benzene ring by 7.0 (6)°, while the benzene and pyrazine rings are oriented at a dihedral angle of 66.2 (3)°. The pyrazine ligands bridge the Ni(II) cations, forming polymeric chains running along the b-axis direction. Intra-molecular O-H⋯O hydrogen bonds link the water ligands to the carboxyl-ate O atoms. In the crystal, water-water O-H⋯O hydrogen bonds link adjacent chains into layers parallel to the bc plane. Pyrazine-formyl C-H⋯O hydrogen bonds link the layers, forming a three-dimensional network. There are also weak C-H⋯π inter-actions present. The title compound is isotypic with the copper(II) complex [Çelik et al. (2014a). Acta Cryst. E70, m4-m5].Entities:
Year: 2014 PMID: 24764828 PMCID: PMC3998267 DOI: 10.1107/S160053681400155X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Ni(C8H5O3)2(C4H4N2)(H2O)2] | |
| Monoclinic, | Mo |
| Hall symbol: -C 2yc | Cell parameters from 5837 reflections |
| θ = 3.1–28.3° | |
| µ = 1.08 mm−1 | |
| β = 94.160 (3)° | Prism, blue |
| 0.48 × 0.23 × 0.14 mm | |
| Bruker SMART BREEZE CCD diffractometer | 1717 independent reflections |
| Radiation source: fine-focus sealed tube | 1554 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 25.3°, θmin = 1.9° |
| Absorption correction: multi-scan ( | |
| 9913 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 1717 reflections | (Δ/σ)max < 0.001 |
| 150 parameters | Δρmax = 2.49 e Å−3 |
| 2 restraints | Δρmin = −1.05 e Å−3 |
| Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell esds are taken into account in the estimation of distances, angles and torsion angles |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| Ni1 | 0.00000 | 0.44790 (12) | 0.25000 | 0.0222 (3) | |
| O1 | 0.13672 (19) | 0.3246 (7) | 0.3338 (3) | 0.0435 (14) | |
| O2 | 0.08397 (17) | 0.4511 (5) | 0.1900 (3) | 0.0294 (11) | |
| O3 | 0.3999 (2) | 0.3724 (9) | 0.0460 (4) | 0.0614 (19) | |
| O4 | 0.0372 (2) | 0.4332 (6) | 0.4119 (3) | 0.0342 (12) | |
| N1 | 0.00000 | 0.1464 (8) | 0.25000 | 0.0242 (17) | |
| N2 | 0.00000 | 0.7500 (8) | 0.25000 | 0.0260 (19) | |
| C1 | 0.1321 (2) | 0.3907 (7) | 0.2394 (5) | 0.0277 (16) | |
| C2 | 0.1890 (2) | 0.3983 (7) | 0.1787 (5) | 0.0284 (16) | |
| C3 | 0.1889 (3) | 0.4908 (8) | 0.0787 (5) | 0.0300 (17) | |
| C4 | 0.2420 (3) | 0.5042 (9) | 0.0271 (5) | 0.0320 (17) | |
| C5 | 0.2955 (3) | 0.4294 (8) | 0.0736 (5) | 0.0339 (17) | |
| C6 | 0.2958 (3) | 0.3342 (8) | 0.1733 (5) | 0.0338 (17) | |
| C7 | 0.2424 (2) | 0.3196 (8) | 0.2243 (5) | 0.0290 (17) | |
| C8 | 0.3520 (3) | 0.4471 (10) | 0.0178 (6) | 0.045 (2) | |
| C9 | 0.0252 (3) | 0.0463 (7) | 0.1723 (5) | 0.0290 (17) | |
| C10 | 0.0250 (2) | 0.8494 (7) | 0.1733 (4) | 0.0280 (17) | |
| H3 | 0.15320 | 0.54320 | 0.04700 | 0.0360* | |
| H4 | 0.24170 | 0.56450 | −0.04010 | 0.0380* | |
| H6 | 0.33140 | 0.28130 | 0.20480 | 0.0410* | |
| H7 | 0.24240 | 0.25590 | 0.29040 | 0.0350* | |
| H8 | 0.35070 | 0.52240 | −0.04450 | 0.0540* | |
| H9 | 0.04310 | 0.11080 | 0.11700 | 0.0350* | |
| H10 | 0.04300 | 0.78400 | 0.11840 | 0.0340* | |
| H41 | 0.040 (4) | 0.545 (5) | 0.430 (7) | 0.06 (3)* | |
| H42 | 0.0721 (18) | 0.396 (13) | 0.407 (7) | 0.07 (3)* |
| Ni1 | 0.0321 (6) | 0.0093 (5) | 0.0253 (6) | 0.0000 | 0.0022 (4) | 0.0000 |
| O1 | 0.046 (2) | 0.049 (3) | 0.036 (2) | 0.008 (2) | 0.0059 (18) | 0.012 (2) |
| O2 | 0.032 (2) | 0.0188 (19) | 0.038 (2) | 0.0020 (14) | 0.0065 (16) | 0.0009 (16) |
| O3 | 0.045 (3) | 0.085 (4) | 0.055 (3) | 0.001 (3) | 0.010 (2) | −0.006 (3) |
| O4 | 0.047 (2) | 0.031 (2) | 0.024 (2) | 0.0063 (19) | −0.0012 (17) | −0.0034 (17) |
| N1 | 0.036 (3) | 0.011 (3) | 0.026 (3) | 0.0000 | 0.005 (2) | 0.0000 |
| N2 | 0.034 (3) | 0.006 (3) | 0.038 (4) | 0.0000 | 0.003 (3) | 0.0000 |
| C1 | 0.039 (3) | 0.012 (2) | 0.032 (3) | −0.002 (2) | 0.002 (2) | 0.000 (2) |
| C2 | 0.040 (3) | 0.013 (2) | 0.032 (3) | −0.002 (2) | 0.002 (2) | −0.004 (2) |
| C3 | 0.036 (3) | 0.022 (3) | 0.031 (3) | 0.000 (2) | −0.004 (2) | −0.002 (2) |
| C4 | 0.047 (3) | 0.023 (3) | 0.026 (3) | −0.006 (2) | 0.003 (2) | 0.000 (2) |
| C5 | 0.040 (3) | 0.026 (3) | 0.036 (3) | −0.005 (2) | 0.004 (2) | −0.007 (2) |
| C6 | 0.036 (3) | 0.027 (3) | 0.038 (3) | 0.005 (2) | 0.001 (2) | −0.002 (2) |
| C7 | 0.039 (3) | 0.021 (3) | 0.027 (3) | 0.005 (2) | 0.003 (2) | 0.002 (2) |
| C8 | 0.050 (4) | 0.044 (4) | 0.043 (4) | −0.007 (3) | 0.008 (3) | −0.002 (3) |
| C9 | 0.045 (3) | 0.017 (3) | 0.026 (3) | −0.002 (2) | 0.009 (2) | 0.002 (2) |
| C10 | 0.041 (3) | 0.016 (3) | 0.028 (3) | 0.000 (2) | 0.010 (2) | −0.004 (2) |
| Ni1—O2 | 2.048 (4) | C2—C3 | 1.393 (8) |
| Ni1—O4 | 2.107 (4) | C2—C7 | 1.384 (7) |
| Ni1—N1 | 2.108 (6) | C3—C4 | 1.378 (9) |
| Ni1—N2 | 2.112 (6) | C4—C5 | 1.379 (9) |
| Ni1—O2i | 2.048 (4) | C5—C6 | 1.398 (9) |
| Ni1—O4i | 2.107 (4) | C5—C8 | 1.474 (9) |
| O1—C1 | 1.250 (7) | C6—C7 | 1.381 (8) |
| O2—C1 | 1.260 (6) | C9—C10ii | 1.377 (7) |
| O3—C8 | 1.209 (8) | C3—H3 | 0.9300 |
| O4—H42 | 0.82 (5) | C4—H4 | 0.9300 |
| O4—H41 | 0.81 (4) | C6—H6 | 0.9300 |
| N1—C9i | 1.340 (7) | C7—H7 | 0.9300 |
| N1—C9 | 1.340 (7) | C8—H8 | 0.9300 |
| N2—C10 | 1.327 (6) | C9—H9 | 0.9300 |
| N2—C10i | 1.327 (6) | C10—H10 | 0.9300 |
| C1—C2 | 1.511 (7) | ||
| O2—Ni1—O4 | 92.38 (16) | C3—C2—C7 | 119.4 (5) |
| O2—Ni1—N1 | 90.63 (10) | C1—C2—C7 | 120.0 (5) |
| O2—Ni1—N2 | 89.37 (10) | C1—C2—C3 | 120.5 (5) |
| O2—Ni1—O2i | 178.75 (15) | C2—C3—C4 | 119.6 (6) |
| O2—Ni1—O4i | 87.68 (16) | C3—C4—C5 | 121.0 (6) |
| O4—Ni1—N1 | 87.20 (12) | C4—C5—C6 | 119.7 (6) |
| O4—Ni1—N2 | 92.80 (12) | C4—C5—C8 | 120.2 (6) |
| O2i—Ni1—O4 | 87.68 (16) | C6—C5—C8 | 120.0 (6) |
| O4—Ni1—O4i | 174.41 (17) | C5—C6—C7 | 119.1 (6) |
| N1—Ni1—N2 | 180.00 (1) | C2—C7—C6 | 121.2 (6) |
| O2i—Ni1—N1 | 90.63 (10) | O3—C8—C5 | 125.7 (7) |
| O4i—Ni1—N1 | 87.20 (12) | N1—C9—C10ii | 120.9 (5) |
| O2i—Ni1—N2 | 89.37 (10) | N2—C10—C9iii | 122.2 (5) |
| O4i—Ni1—N2 | 92.80 (12) | C2—C3—H3 | 120.00 |
| O2i—Ni1—O4i | 92.38 (16) | C4—C3—H3 | 120.00 |
| Ni1—O2—C1 | 125.3 (4) | C3—C4—H4 | 119.00 |
| Ni1—O4—H41 | 103 (6) | C5—C4—H4 | 120.00 |
| Ni1—O4—H42 | 105 (6) | C5—C6—H6 | 120.00 |
| H41—O4—H42 | 106 (9) | C7—C6—H6 | 120.00 |
| C9—N1—C9i | 117.0 (5) | C2—C7—H7 | 120.00 |
| Ni1—N1—C9 | 121.5 (3) | C6—C7—H7 | 119.00 |
| Ni1—N1—C9i | 121.5 (3) | O3—C8—H8 | 117.00 |
| Ni1—N2—C10 | 121.6 (3) | C5—C8—H8 | 117.00 |
| Ni1—N2—C10i | 121.6 (3) | N1—C9—H9 | 120.00 |
| C10—N2—C10i | 116.8 (5) | C10ii—C9—H9 | 120.00 |
| O1—C1—O2 | 125.7 (5) | N2—C10—H10 | 119.00 |
| O2—C1—C2 | 116.9 (5) | C9iii—C10—H10 | 119.00 |
| O1—C1—C2 | 117.4 (4) | ||
| O4—Ni1—O2—C1 | 22.0 (4) | Ni1—N1—C9—C10ii | 179.9 (4) |
| N1—Ni1—O2—C1 | −65.3 (4) | Ni1—N2—C10—C9iii | 179.9 (4) |
| N2—Ni1—O2—C1 | 114.7 (4) | O1—C1—C2—C3 | −172.2 (5) |
| O4i—Ni1—O2—C1 | −152.5 (4) | O1—C1—C2—C7 | 5.2 (8) |
| O2—Ni1—N1—C9 | −35.6 (3) | O2—C1—C2—C3 | 8.0 (7) |
| O2—Ni1—N1—C9i | 144.4 (3) | O2—C1—C2—C7 | −174.5 (5) |
| O4—Ni1—N1—C9 | −128.0 (3) | C1—C2—C3—C4 | 176.9 (5) |
| O4—Ni1—N1—C9i | 52.0 (3) | C7—C2—C3—C4 | −0.6 (8) |
| O2i—Ni1—N1—C9 | 144.4 (3) | C1—C2—C7—C6 | −176.3 (5) |
| O4i—Ni1—N1—C9 | 52.0 (3) | C3—C2—C7—C6 | 1.2 (8) |
| O2—Ni1—N2—C10 | 35.5 (3) | C2—C3—C4—C5 | −0.8 (9) |
| O2—Ni1—N2—C10i | −144.5 (3) | C3—C4—C5—C6 | 1.6 (9) |
| O4—Ni1—N2—C10 | 127.9 (3) | C3—C4—C5—C8 | −179.3 (6) |
| O4—Ni1—N2—C10i | −52.1 (3) | C4—C5—C6—C7 | −1.0 (9) |
| O2i—Ni1—N2—C10 | −144.5 (3) | C8—C5—C6—C7 | 179.9 (6) |
| O4i—Ni1—N2—C10 | −52.1 (3) | C4—C5—C8—O3 | −172.9 (7) |
| Ni1—O2—C1—O1 | −2.3 (8) | C6—C5—C8—O3 | 6.3 (10) |
| Ni1—O2—C1—C2 | 177.5 (3) | C5—C6—C7—C2 | −0.4 (9) |
| H··· | ||||
| O4—H42···O1 | 0.82 (5) | 1.81 (6) | 2.579 (6) | 155 (8) |
| O4—H41···O3iv | 0.82 (2) | 2.65 (5) | 3.395 (8) | 152 (8) |
| C9—H9···O3v | 0.93 | 2.45 | 3.311 (8) | 154 |
| C7—H7··· | 0.93 | 2.62 | 3.395 (6) | 141 |
Hydrogen-bond geometry (Å, °)
Cg1 is the centroid of the C2–C7 ring.
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O4—H42⋯O1 | 0.82 (5) | 1.81 (6) | 2.579 (6) | 155 (8) |
| O4—H41⋯O3i | 0.82 (2) | 2.65 (5) | 3.395 (8) | 152 (8) |
| C9—H9⋯O3ii | 0.93 | 2.45 | 3.311 (8) | 154 |
| C7—H7⋯ | 0.93 | 2.62 | 3.395 (6) | 141 |
Symmetry codes: (i) ; (ii) ; (iii) .