Literature DB >> 21581557

Bis(μ-pyridazine-3-carboxyl-ato-κO:O')bis-[aqua-dioxido(pyridazine-3-carboxyl-ato-κN,O)uranium(VI)] dihydrate.

Janusz Leciejewicz1, Wojciech Starosta.   

Abstract

The structure of the binuclear title complex, [U(2)(C(5)H(3)N(2)O(2))(4)O(4)(H(2)O)(2)]·2H(2)O, is composed of centrosymmetric dimers in which each UO(2) (2+) ion is coordinated by two ligand mol-ecules. One donates its N,O-bonding group and the other donates both carboxyl-ate O atoms. Each of the latter bridges adjacent uranyl ions. The coordination environment of the metal center is a distorted penta-gonal bipyramid. The dimers are inter-connected by O-H⋯O hydrogen bonds between coordinated and uncoordinated water mol-ecules and carboxyl-ate O atoms. An intra-molecular O-H⋯N inter-action is also present.

Entities:  

Year:  2008        PMID: 21581557      PMCID: PMC2967926          DOI: 10.1107/S1600536808042219

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structure of pyridazine–3–carboxylic acid hydro­chloride, see: Gryz et al. (2003 ▶). For centrosymmetric dimeric mol­ecules with a different bridging mode for the title ligand to calcium(II), see: Starosta & Leciejewicz (2007 ▶). For bond distances and angles in uranyl complexes with carboxyl­ate ligands, see: Leciejewicz et al. (1995 ▶).

Experimental

Crystal data

[U2(C5H3N2O2)4O4(H2O)2]·2H2O M = 1104.50 Monoclinic, a = 25.660 (5) Å b = 6.8330 (14) Å c = 16.673 (3) Å β = 96.73 (3)° V = 2903.2 (10) Å3 Z = 4 Mo Kα radiation μ = 11.23 mm−1 T = 293 (2) K 0.19 × 0.12 × 0.07 mm

Data collection

Kuma KM-4 four-circle diffractometer Absorption correction: analytical (CrysAlis RED; Oxford Diffraction, 2008 ▶) T min = 0.234, T max = 0.470 4406 measured reflections 4266 independent reflections 2746 reflections with I > 2σ(I) R int = 0.025 3 standard reflections every 200 reflections intensity decay: 1.0%

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.127 S = 1.01 4266 reflections 220 parameters 5 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 2.83 e Å−3 Δρmin = −4.65 e Å−3 Data collection: KM-4 Software (Kuma, 1996 ▶); cell refinement: KM-4 Software; data reduction: DATAPROC (Kuma, 2001 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808042219/rk2117sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808042219/rk2117Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[U2(C5H3N2O2)4O4(H2O)2]·2H2OF(000) = 2032
Mr = 1104.50Dx = 2.527 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 25 reflections
a = 25.660 (5) Åθ = 6–15°
b = 6.8330 (14) ŵ = 11.23 mm1
c = 16.673 (3) ÅT = 293 K
β = 96.73 (3)°Block, light green
V = 2903.2 (10) Å30.19 × 0.12 × 0.07 mm
Z = 4
Kuma KM-4 four-circle diffractometer2746 reflections with I > 2σ(I)
Radiation source: Fine–focus sealed tubeRint = 0.025
Graphiteθmax = 30.1°, θmin = 1.6°
ω/2θ profile scansh = −36→35
Absorption correction: analytical (CrysAlis RED; Oxford Diffraction, 2008)k = −9→0
Tmin = 0.234, Tmax = 0.470l = 0→23
4406 measured reflections3 standard reflections every 200 reflections
4266 independent reflections intensity decay: 1.0%
Refinement on F2Primary atom site location: Direct
Least-squares matrix: FullSecondary atom site location: Difmap
R[F2 > 2σ(F2)] = 0.043Hydrogen site location: Geom
wR(F2) = 0.127H atoms treated by a mixture of independent and constrained refinement
S = 1.01w = 1/[σ2(Fo2) + (0.0893P)2], where P = (Fo2 + 2Fc2)/3
4266 reflections(Δ/σ)max < 0.001
220 parametersΔρmax = 2.83 e Å3
5 restraintsΔρmin = −4.65 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R–factor wR and goodness of fit S are based on F2, conventional R–factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R–factors(gt) etc. and is not relevant to the choice of reflections for refinement. R–factors based on F2 are statistically about twice as large as those based on F, and R–factors based on ALL data will be even larger.
xyzUiso*/Ueq
U10.388813 (9)0.70410 (6)0.214716 (15)0.02772 (11)
O110.4687 (2)0.7142 (12)0.1613 (4)0.0436 (16)
O210.3379 (2)0.7086 (11)0.3224 (3)0.0425 (16)
C140.5457 (4)0.7835 (16)−0.0802 (6)0.044 (2)
H140.57400.8037−0.10920.052*
C160.5070 (3)0.7471 (11)0.0398 (5)0.0267 (16)
O120.5529 (2)0.7589 (12)0.1677 (4)0.0483 (19)
N210.2881 (3)0.6906 (12)0.1781 (4)0.0365 (17)
N110.4595 (3)0.7245 (12)−0.0016 (4)0.0345 (15)
C260.2583 (3)0.6998 (13)0.2373 (5)0.0289 (15)
N120.4535 (3)0.7342 (14)−0.0813 (4)0.0423 (19)
O10.3944 (2)0.4495 (11)0.2272 (4)0.0420 (15)
C150.5519 (3)0.7755 (15)0.0024 (5)0.0380 (19)
H150.58470.78840.03210.046*
C170.5096 (3)0.7400 (12)0.1300 (5)0.0274 (16)
C130.4960 (5)0.7605 (15)−0.1178 (5)0.046 (2)
H130.49160.7636−0.17390.056*
O30.3712 (2)0.6478 (13)0.0725 (4)0.0480 (19)
H320.361 (5)0.537 (8)0.060 (8)0.072*
H310.398 (3)0.655 (19)0.050 (7)0.072*
O220.2641 (2)0.7074 (12)0.3803 (4)0.0478 (17)
O20.3827 (3)0.9573 (12)0.1990 (4)0.0501 (17)
N220.2650 (3)0.6893 (14)0.0999 (4)0.046 (2)
C270.2882 (3)0.7068 (14)0.3202 (5)0.0313 (15)
C250.2035 (3)0.7050 (14)0.2253 (6)0.0371 (18)
H250.18330.70940.26810.045*
C230.2131 (4)0.6890 (16)0.0858 (6)0.045 (2)
H230.19760.67860.03270.054*
C240.1812 (3)0.7034 (18)0.1457 (7)0.051 (3)
H240.14500.71180.13310.061*
O40.3251 (3)0.6999 (15)0.5313 (5)0.058 (2)
H420.311 (5)0.75 (2)0.567 (5)0.086*
H410.306 (5)0.71 (2)0.488 (4)0.086*
U11U22U33U12U13U23
U10.01643 (13)0.04731 (19)0.02056 (14)0.00034 (12)0.00697 (8)0.00059 (13)
O110.022 (3)0.087 (5)0.023 (3)−0.010 (3)0.007 (2)−0.006 (3)
O210.027 (3)0.082 (5)0.020 (2)−0.001 (3)0.010 (2)0.001 (3)
C140.048 (5)0.054 (5)0.033 (4)−0.009 (4)0.025 (4)−0.002 (4)
C160.024 (3)0.033 (5)0.025 (3)0.001 (2)0.007 (3)−0.003 (3)
O120.022 (3)0.100 (6)0.024 (3)0.000 (3)0.002 (2)0.012 (3)
N210.021 (3)0.065 (5)0.025 (3)0.001 (3)0.008 (2)0.003 (3)
N110.029 (3)0.054 (5)0.021 (3)−0.002 (3)0.005 (2)0.002 (3)
C260.019 (3)0.040 (4)0.029 (3)0.004 (3)0.008 (2)0.004 (3)
N120.045 (4)0.060 (6)0.021 (3)−0.003 (4)0.002 (3)−0.003 (3)
O10.039 (3)0.049 (4)0.040 (3)0.003 (3)0.014 (3)0.006 (3)
C150.026 (4)0.060 (6)0.030 (4)−0.002 (4)0.013 (3)0.005 (4)
C170.023 (3)0.038 (5)0.023 (3)0.005 (3)0.009 (3)0.005 (3)
C130.064 (6)0.056 (7)0.021 (4)−0.007 (5)0.010 (4)0.000 (4)
O30.021 (3)0.094 (6)0.030 (3)−0.003 (3)0.009 (2)0.000 (3)
O220.030 (3)0.088 (5)0.027 (3)0.010 (3)0.015 (2)0.002 (3)
O20.057 (4)0.047 (4)0.048 (4)−0.003 (3)0.014 (3)0.006 (3)
N220.027 (3)0.088 (7)0.024 (3)0.001 (3)0.003 (3)0.005 (4)
C270.022 (3)0.041 (4)0.033 (4)0.007 (3)0.011 (3)0.006 (4)
C250.021 (3)0.046 (5)0.046 (5)−0.003 (3)0.013 (3)0.004 (4)
C230.032 (4)0.069 (7)0.034 (4)0.000 (4)−0.004 (3)0.010 (4)
C240.014 (3)0.074 (7)0.064 (7)0.000 (4)−0.003 (3)0.010 (6)
O40.041 (4)0.100 (7)0.033 (3)0.012 (4)0.010 (3)0.008 (4)
U1—O21.754 (8)N21—N221.367 (10)
U1—O11.756 (8)N11—N121.321 (10)
U1—O112.331 (6)C26—C251.399 (10)
U1—O212.342 (5)C26—C271.501 (11)
U1—O12i2.352 (6)N12—C131.322 (13)
U1—O32.393 (6)C15—H150.9300
U1—N212.588 (7)C13—H130.9300
O11—C171.236 (9)O3—H320.82 (6)
O21—C271.272 (9)O3—H310.82 (9)
C14—C131.362 (15)O22—C271.237 (9)
C14—C151.369 (12)N22—C231.326 (11)
C14—H140.9300C25—C241.382 (15)
C16—N111.338 (10)C25—H250.9300
C16—C151.385 (10)C23—C241.368 (15)
C16—C171.500 (11)C23—H230.9300
O12—C171.218 (9)C24—H240.9300
O12—U1i2.352 (6)O4—H420.81 (11)
N21—C261.317 (9)O4—H410.83 (8)
O2—U1—O1178.2 (3)N22—N21—U1122.2 (5)
O2—U1—O1188.9 (3)N12—N11—C16120.3 (7)
O1—U1—O1190.7 (3)N21—C26—C25123.8 (8)
O2—U1—O2193.1 (3)N21—C26—C27114.4 (6)
O1—U1—O2188.1 (3)C25—C26—C27121.8 (7)
O11—U1—O21152.6 (2)N11—N12—C13117.6 (8)
O2—U1—O12i90.3 (3)C14—C15—C16117.0 (8)
O1—U1—O12i91.4 (3)C14—C15—H15121.5
O11—U1—O12i79.1 (2)C16—C15—H15121.5
O21—U1—O12i73.5 (2)O12—C17—O11124.4 (7)
O2—U1—O390.4 (3)O12—C17—C16116.3 (7)
O1—U1—O387.8 (3)O11—C17—C16119.2 (7)
O11—U1—O372.4 (2)N12—C13—C14125.6 (8)
O21—U1—O3134.8 (2)N12—C13—H13117.2
O12i—U1—O3151.5 (2)C14—C13—H13117.2
O2—U1—N2186.0 (3)U1—O3—H32115 (9)
O1—U1—N2193.3 (3)U1—O3—H31112 (9)
O11—U1—N21144.2 (2)H32—O3—H31101 (10)
O21—U1—N2163.2 (2)C23—N22—N21118.8 (7)
O12i—U1—N21136.3 (2)O22—C27—O21124.7 (8)
O3—U1—N2172.1 (2)O22—C27—C26119.8 (7)
C17—O11—U1173.0 (7)O21—C27—C26115.4 (6)
C27—O21—U1128.7 (5)C24—C25—C26115.6 (8)
C13—C14—C15116.8 (8)C24—C25—H25122.2
C13—C14—H14121.6C26—C25—H25122.2
C15—C14—H14121.6N22—C23—C24123.1 (9)
N11—C16—C15122.6 (8)N22—C23—H23118.5
N11—C16—C17116.3 (7)C24—C23—H23118.5
C15—C16—C17121.0 (7)C23—C24—C25119.1 (8)
C17—O12—U1i150.0 (6)C23—C24—H24120.4
C26—N21—N22119.4 (7)C25—C24—H24120.4
C26—N21—U1118.2 (5)H42—O4—H41110 (12)
D—H···AD—HH···AD···AD—H···A
O4—H42···O22ii0.81 (11)2.23 (9)2.933 (9)146 (14)
O4—H41···O220.83 (8)1.98 (8)2.803 (10)175 (13)
O3—H31···N110.82 (9)1.94 (9)2.754 (9)170 (13)
O3—H32···O4iii0.82 (6)1.90 (9)2.707 (12)170 (13)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O4—H42⋯O22i0.81 (11)2.23 (9)2.933 (9)146 (14)
O4—H41⋯O220.83 (8)1.98 (8)2.803 (10)175 (13)
O3—H31⋯N110.82 (9)1.94 (9)2.754 (9)170 (13)
O3—H32⋯O4ii0.82 (6)1.90 (9)2.707 (12)170 (13)

Symmetry codes: (i) ; (ii) .

  1 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  1 in total
  3 in total

1.  Di-μ-aqua-bis-(μ-pyridazine-4-carboxyl-ato-κN:N')bis-[triaqua-(pyridazine-4-carboxyl-ato-κO,O')lead(II)] dihydrate.

Authors:  Wojciech Starosta; Janusz Leciejewicz
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-03

2.  catena-Poly[lead(II)-bis-(μ(2)-pyridazine-3-carboxyl-ato-κN,O:O)].

Authors:  Wojciech Starosta; Janusz Leciejewicz
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-01-23

3.  trans-Diaqua-(pyridazine-3-carboxyl-ato-κN,O)lithium.

Authors:  Wojciech Starosta; Janusz Leciejewicz
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-01-15
  3 in total

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