Literature DB >> 21837116

4-(4-Chloro-phen-yl)-4-hy-droxy-piperidinium 2-(2-phenyl-eth-yl)benzoate.

Hoong-Kun Fun, Madhukar Hemamalini, B P Siddaraju, H S Yathirajan, B Narayana.   

Abstract

In the title compound, C(11)H(15)ClNO(+)·C(15)H(13)O(2) (-), the piperidinium ring adopts a chair conformation. In the crystal, cations and anions are connected by inter-molecular O-H⋯O and N-H⋯O hydrogen bonds, forming two-dimensional networks parallel to the bc plane. Furthermore, the crystal structure is stabilized by weak C-H⋯π inter-actions.

Entities:  

Year:  2011        PMID: 21837116      PMCID: PMC3152132          DOI: 10.1107/S1600536811023051

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Cygler et al. (1980 ▶); Cygler & Ahmed, (1984 ▶); Dutkiewicz et al. (2010 ▶); Jasinski et al. (2009 ▶, 2010 ▶); Tomlin et al. (1996 ▶). For the synthesis and biological activity of uncondensed cyclic derivatives of piperidine, see: Vartanyan (1984 ▶). For ring conformations, see: Cremer & Pople (1975 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C11H15ClNOC15H13O2 M = 437.94 Monoclinic, a = 13.1016 (2) Å b = 10.2963 (2) Å c = 16.8015 (3) Å β = 98.234 (1)° V = 2243.12 (7) Å3 Z = 4 Mo Kα radiation μ = 0.20 mm−1 T = 100 K 0.45 × 0.43 × 0.33 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.916, T max = 0.938 27219 measured reflections 8207 independent reflections 6646 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.120 S = 1.03 8207 reflections 292 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.44 e Å−3 Δρmin = −0.36 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811023051/rz2607sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811023051/rz2607Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811023051/rz2607Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H15ClNO+·C15H13O2F(000) = 928
Mr = 437.94Dx = 1.297 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 9967 reflections
a = 13.1016 (2) Åθ = 2.5–32.7°
b = 10.2963 (2) ŵ = 0.20 mm1
c = 16.8015 (3) ÅT = 100 K
β = 98.234 (1)°Block, colourless
V = 2243.12 (7) Å30.45 × 0.43 × 0.33 mm
Z = 4
Bruker SMART APEXII CCD area-detector diffractometer8207 independent reflections
Radiation source: fine-focus sealed tube6646 reflections with I > 2σ(I)
graphiteRint = 0.025
φ and ω scansθmax = 32.7°, θmin = 1.6°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −19→19
Tmin = 0.916, Tmax = 0.938k = −15→15
27219 measured reflectionsl = −25→25
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.120H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0626P)2 + 0.5497P] where P = (Fo2 + 2Fc2)/3
8207 reflections(Δ/σ)max = 0.001
292 parametersΔρmax = 0.44 e Å3
0 restraintsΔρmin = −0.36 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.31506 (2)0.35787 (3)0.13139 (2)0.03391 (8)
O10.00926 (5)−0.14140 (7)0.20489 (5)0.02077 (15)
N10.03580 (6)−0.41264 (8)0.08973 (5)0.01795 (15)
C10.20108 (7)0.00102 (10)0.08361 (6)0.01995 (18)
H1A0.2080−0.06610.04600.024*
C20.25545 (8)0.11629 (10)0.07964 (6)0.02206 (19)
H2A0.29900.12800.03960.026*
C30.24543 (8)0.21405 (10)0.13489 (7)0.02213 (19)
C40.18101 (8)0.19870 (10)0.19279 (7)0.0250 (2)
H4A0.17370.26650.22990.030*
C50.12706 (8)0.08269 (10)0.19592 (6)0.02169 (19)
H5A0.08300.07200.23570.026*
C60.13625 (7)−0.01800 (9)0.14203 (6)0.01690 (16)
C70.07888 (7)−0.14634 (9)0.14699 (6)0.01646 (16)
C80.15729 (7)−0.25735 (9)0.16651 (6)0.01683 (16)
H8A0.2050−0.25860.12590.020*
H8B0.1985−0.24140.21970.020*
C90.10419 (7)−0.38846 (10)0.16734 (6)0.01883 (17)
H9A0.1569−0.45790.17650.023*
H9B0.0627−0.39100.21210.023*
C10−0.04213 (7)−0.30767 (10)0.06881 (6)0.02007 (18)
H10A−0.0903−0.30590.10910.024*
H10B−0.0825−0.32600.01560.024*
C110.01043 (7)−0.17595 (9)0.06675 (6)0.01840 (17)
H11A−0.0427−0.10740.05550.022*
H11B0.0532−0.17510.02270.022*
O20.17229 (6)−0.09424 (8)0.48194 (4)0.02185 (15)
O30.06394 (5)−0.12510 (7)0.36821 (5)0.02150 (15)
C120.40341 (9)0.18559 (11)0.42461 (7)0.0259 (2)
H12A0.35260.17060.45860.031*
C130.47129 (9)0.28931 (11)0.44020 (8)0.0308 (2)
H13A0.46690.34430.48500.037*
C140.54514 (9)0.31271 (12)0.39082 (9)0.0347 (3)
H14A0.59150.38360.40160.042*
C150.55121 (10)0.23302 (15)0.32602 (10)0.0405 (3)
H15A0.60150.24940.29180.049*
C160.48372 (9)0.12813 (13)0.31033 (8)0.0332 (3)
H16A0.48880.07320.26560.040*
C170.40923 (7)0.10336 (10)0.35948 (6)0.02131 (18)
C180.34031 (8)−0.01409 (10)0.34599 (7)0.02296 (19)
H18A0.3426−0.04880.29130.028*
H18B0.26830.01150.34970.028*
C190.37437 (7)−0.12055 (10)0.40862 (7)0.02103 (18)
H19A0.4493−0.13580.41070.025*
H19B0.3623−0.08970.46230.025*
C200.31783 (7)−0.24719 (9)0.39020 (6)0.01833 (17)
C210.37025 (8)−0.35504 (11)0.36547 (7)0.0240 (2)
H21A0.4418−0.34760.36220.029*
C220.32102 (9)−0.47260 (10)0.34553 (7)0.0254 (2)
H22A0.3588−0.54410.32910.031*
C230.21641 (8)−0.48510 (10)0.34974 (6)0.02224 (19)
H23A0.1825−0.56580.33770.027*
C240.16174 (8)−0.37824 (9)0.37178 (6)0.01810 (17)
H24A0.0897−0.38580.37300.022*
C250.21110 (7)−0.26014 (9)0.39210 (5)0.01569 (16)
C260.14577 (7)−0.15046 (9)0.41621 (6)0.01634 (16)
H1O10.0426 (13)−0.1412 (16)0.2549 (11)0.040 (4)*
H1N1−0.0007 (12)−0.4910 (15)0.0969 (10)0.032 (4)*
H2N10.0777 (12)−0.4202 (16)0.0507 (10)0.033 (4)*
U11U22U33U12U13U23
Cl10.04360 (17)0.02108 (12)0.04013 (17)−0.00762 (10)0.01656 (13)−0.00582 (10)
O10.0165 (3)0.0312 (4)0.0156 (3)−0.0001 (3)0.0057 (3)−0.0022 (3)
N10.0182 (3)0.0205 (4)0.0155 (4)−0.0027 (3)0.0033 (3)0.0009 (3)
C10.0230 (4)0.0201 (4)0.0178 (4)0.0008 (3)0.0066 (3)−0.0022 (3)
C20.0258 (4)0.0206 (4)0.0214 (5)−0.0005 (3)0.0089 (4)−0.0008 (3)
C30.0239 (4)0.0183 (4)0.0246 (5)0.0001 (3)0.0050 (4)−0.0016 (3)
C40.0281 (5)0.0227 (4)0.0255 (5)0.0008 (4)0.0085 (4)−0.0078 (4)
C50.0211 (4)0.0248 (4)0.0206 (5)0.0004 (3)0.0079 (4)−0.0059 (4)
C60.0155 (4)0.0201 (4)0.0151 (4)0.0015 (3)0.0022 (3)−0.0012 (3)
C70.0153 (4)0.0209 (4)0.0136 (4)0.0004 (3)0.0035 (3)−0.0013 (3)
C80.0149 (3)0.0208 (4)0.0149 (4)−0.0007 (3)0.0026 (3)0.0006 (3)
C90.0188 (4)0.0227 (4)0.0148 (4)−0.0016 (3)0.0018 (3)0.0030 (3)
C100.0168 (4)0.0243 (4)0.0186 (4)−0.0008 (3)0.0006 (3)−0.0005 (3)
C110.0183 (4)0.0208 (4)0.0157 (4)0.0011 (3)0.0010 (3)−0.0006 (3)
O20.0217 (3)0.0268 (3)0.0178 (3)−0.0008 (3)0.0056 (3)−0.0061 (3)
O30.0197 (3)0.0251 (3)0.0195 (3)0.0051 (3)0.0021 (3)−0.0039 (3)
C120.0264 (5)0.0253 (5)0.0263 (5)−0.0002 (4)0.0050 (4)0.0022 (4)
C130.0326 (5)0.0245 (5)0.0331 (6)−0.0002 (4)−0.0027 (5)0.0002 (4)
C140.0249 (5)0.0297 (5)0.0469 (8)−0.0076 (4)−0.0040 (5)0.0058 (5)
C150.0284 (5)0.0478 (7)0.0478 (8)−0.0146 (5)0.0141 (5)0.0033 (6)
C160.0292 (5)0.0400 (6)0.0333 (6)−0.0091 (5)0.0148 (5)−0.0026 (5)
C170.0174 (4)0.0240 (4)0.0225 (5)−0.0015 (3)0.0029 (3)0.0044 (4)
C180.0214 (4)0.0247 (4)0.0227 (5)−0.0035 (3)0.0029 (4)0.0030 (4)
C190.0163 (4)0.0233 (4)0.0234 (5)−0.0012 (3)0.0025 (3)0.0023 (4)
C200.0163 (4)0.0209 (4)0.0178 (4)0.0021 (3)0.0026 (3)0.0017 (3)
C210.0191 (4)0.0285 (5)0.0245 (5)0.0070 (4)0.0040 (4)−0.0010 (4)
C220.0286 (5)0.0239 (5)0.0234 (5)0.0095 (4)0.0025 (4)−0.0021 (4)
C230.0303 (5)0.0182 (4)0.0179 (4)0.0023 (4)0.0023 (4)−0.0008 (3)
C240.0210 (4)0.0191 (4)0.0144 (4)−0.0008 (3)0.0034 (3)0.0003 (3)
C250.0172 (4)0.0177 (4)0.0125 (4)0.0011 (3)0.0030 (3)0.0008 (3)
C260.0165 (4)0.0175 (4)0.0162 (4)−0.0008 (3)0.0064 (3)0.0003 (3)
Cl1—C31.7447 (10)O3—C261.2728 (12)
O1—C71.4265 (11)C12—C131.3905 (16)
O1—H1O10.890 (18)C12—C171.3943 (16)
N1—C91.4934 (13)C12—H12A0.9500
N1—C101.4938 (13)C13—C141.3829 (19)
N1—H1N10.954 (16)C13—H13A0.9500
N1—H2N10.917 (16)C14—C151.375 (2)
C1—C21.3908 (14)C14—H14A0.9500
C1—C61.4008 (13)C15—C161.3967 (18)
C1—H1A0.9500C15—H15A0.9500
C2—C31.3881 (14)C16—C171.3893 (15)
C2—H2A0.9500C16—H16A0.9500
C3—C41.3852 (15)C17—C181.5068 (14)
C4—C51.3928 (15)C18—C191.5406 (15)
C4—H4A0.9500C18—H18A0.9900
C5—C61.3929 (13)C18—H18B0.9900
C5—H5A0.9500C19—C201.5097 (14)
C6—C71.5284 (13)C19—H19A0.9900
C7—C111.5390 (13)C19—H19B0.9900
C7—C81.5404 (13)C20—C211.3996 (13)
C8—C91.5196 (13)C20—C251.4096 (12)
C8—H8A0.9900C21—C221.3898 (16)
C8—H8B0.9900C21—H21A0.9500
C9—H9A0.9900C22—C231.3885 (16)
C9—H9B0.9900C22—H22A0.9500
C10—C111.5237 (14)C23—C241.3916 (13)
C10—H10A0.9900C23—H23A0.9500
C10—H10B0.9900C24—C251.3966 (13)
C11—H11A0.9900C24—H24A0.9500
C11—H11B0.9900C25—C261.5071 (12)
O2—C261.2513 (12)
C7—O1—H1O1111.7 (11)C7—C11—H11B109.3
C9—N1—C10112.91 (8)H11A—C11—H11B108.0
C9—N1—H1N1106.3 (10)C13—C12—C17120.59 (10)
C10—N1—H1N1107.7 (9)C13—C12—H12A119.7
C9—N1—H2N1107.0 (10)C17—C12—H12A119.7
C10—N1—H2N1110.6 (10)C14—C13—C12120.29 (12)
H1N1—N1—H2N1112.3 (14)C14—C13—H13A119.9
C2—C1—C6121.27 (9)C12—C13—H13A119.9
C2—C1—H1A119.4C15—C14—C13119.73 (11)
C6—C1—H1A119.4C15—C14—H14A120.1
C3—C2—C1119.24 (9)C13—C14—H14A120.1
C3—C2—H2A120.4C14—C15—C16120.27 (12)
C1—C2—H2A120.4C14—C15—H15A119.9
C4—C3—C2120.83 (9)C16—C15—H15A119.9
C4—C3—Cl1119.64 (8)C17—C16—C15120.62 (12)
C2—C3—Cl1119.53 (8)C17—C16—H16A119.7
C3—C4—C5119.20 (9)C15—C16—H16A119.7
C3—C4—H4A120.4C16—C17—C12118.49 (10)
C5—C4—H4A120.4C16—C17—C18120.98 (10)
C4—C5—C6121.48 (9)C12—C17—C18120.43 (9)
C4—C5—H5A119.3C17—C18—C19111.07 (9)
C6—C5—H5A119.3C17—C18—H18A109.4
C5—C6—C1117.96 (9)C19—C18—H18A109.4
C5—C6—C7121.28 (8)C17—C18—H18B109.4
C1—C6—C7120.75 (8)C19—C18—H18B109.4
O1—C7—C6111.95 (7)H18A—C18—H18B108.0
O1—C7—C11104.79 (7)C20—C19—C18112.89 (8)
C6—C7—C11110.66 (8)C20—C19—H19A109.0
O1—C7—C8110.69 (7)C18—C19—H19A109.0
C6—C7—C8109.57 (7)C20—C19—H19B109.0
C11—C7—C8109.07 (7)C18—C19—H19B109.0
C9—C8—C7111.65 (7)H19A—C19—H19B107.8
C9—C8—H8A109.3C21—C20—C25117.53 (9)
C7—C8—H8A109.3C21—C20—C19119.93 (8)
C9—C8—H8B109.3C25—C20—C19122.43 (8)
C7—C8—H8B109.3C22—C21—C20122.15 (9)
H8A—C8—H8B108.0C22—C21—H21A118.9
N1—C9—C8111.00 (8)C20—C21—H21A118.9
N1—C9—H9A109.4C23—C22—C21119.73 (9)
C8—C9—H9A109.4C23—C22—H22A120.1
N1—C9—H9B109.4C21—C22—H22A120.1
C8—C9—H9B109.4C22—C23—C24119.32 (9)
H9A—C9—H9B108.0C22—C23—H23A120.3
N1—C10—C11110.70 (7)C24—C23—H23A120.3
N1—C10—H10A109.5C23—C24—C25121.03 (9)
C11—C10—H10A109.5C23—C24—H24A119.5
N1—C10—H10B109.5C25—C24—H24A119.5
C11—C10—H10B109.5C24—C25—C20120.20 (8)
H10A—C10—H10B108.1C24—C25—C26117.20 (8)
C10—C11—C7111.40 (8)C20—C25—C26122.60 (8)
C10—C11—H11A109.3O2—C26—O3124.51 (9)
C7—C11—H11A109.3O2—C26—C25119.16 (8)
C10—C11—H11B109.3O3—C26—C25116.28 (8)
C6—C1—C2—C30.23 (16)C12—C13—C14—C150.08 (19)
C1—C2—C3—C4−0.97 (16)C13—C14—C15—C16−0.5 (2)
C1—C2—C3—Cl1178.92 (8)C14—C15—C16—C170.5 (2)
C2—C3—C4—C50.93 (17)C15—C16—C17—C120.07 (19)
Cl1—C3—C4—C5−178.95 (9)C15—C16—C17—C18−176.32 (12)
C3—C4—C5—C6−0.16 (17)C13—C12—C17—C16−0.52 (17)
C4—C5—C6—C1−0.55 (15)C13—C12—C17—C18175.89 (10)
C4—C5—C6—C7178.51 (10)C16—C17—C18—C19103.89 (12)
C2—C1—C6—C50.52 (15)C12—C17—C18—C19−72.43 (12)
C2—C1—C6—C7−178.55 (9)C17—C18—C19—C20−171.43 (8)
C5—C6—C7—O16.88 (12)C18—C19—C20—C21110.08 (11)
C1—C6—C7—O1−174.08 (8)C18—C19—C20—C25−65.94 (12)
C5—C6—C7—C11123.37 (10)C25—C20—C21—C22−1.84 (16)
C1—C6—C7—C11−57.59 (11)C19—C20—C21—C22−178.06 (10)
C5—C6—C7—C8−116.32 (10)C20—C21—C22—C230.16 (17)
C1—C6—C7—C862.72 (11)C21—C22—C23—C241.79 (16)
O1—C7—C8—C959.36 (10)C22—C23—C24—C25−2.03 (15)
C6—C7—C8—C9−176.70 (8)C23—C24—C25—C200.30 (14)
C11—C7—C8—C9−55.42 (10)C23—C24—C25—C26−179.23 (9)
C10—N1—C9—C8−55.59 (10)C21—C20—C25—C241.59 (14)
C7—C8—C9—N155.39 (10)C19—C20—C25—C24177.71 (9)
C9—N1—C10—C1155.93 (10)C21—C20—C25—C26−178.90 (9)
N1—C10—C11—C7−56.19 (10)C19—C20—C25—C26−2.79 (14)
O1—C7—C11—C10−62.75 (9)C24—C25—C26—O2125.98 (10)
C6—C7—C11—C10176.40 (7)C20—C25—C26—O2−53.54 (13)
C8—C7—C11—C1055.79 (10)C24—C25—C26—O3−51.43 (12)
C17—C12—C13—C140.45 (17)C20—C25—C26—O3129.05 (10)
Cg2 is the centroid of the C20–C25 ring.
D—H···AD—HH···AD···AD—H···A
O1—H1O1···O30.890 (18)1.891 (18)2.7401 (12)158.8 (16)
N1—H1N1···O3i0.954 (16)1.754 (16)2.6939 (11)167.7 (15)
N1—H2N1···O2ii0.917 (16)1.818 (16)2.7223 (11)168.6 (15)
C8—H8B···Cg20.992.853.6743 (11)141
Table 1

Hydrogen-bond geometry (Å, °)

Cg2 is the centroid of the C20–C25 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1O1⋯O30.890 (18)1.891 (18)2.7401 (12)158.8 (16)
N1—H1N1⋯O3i0.954 (16)1.754 (16)2.6939 (11)167.7 (15)
N1—H2N1⋯O2ii0.917 (16)1.818 (16)2.7223 (11)168.6 (15)
C8—H8BCg20.992.853.6743 (11)141

Symmetry codes: (i) ; (ii) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  4-(4-Chloro-phen-yl)piperidin-4-ol.

Authors:  Grzegorz Dutkiewicz; B P Siddaraju; H S Yathirajan; M S Siddegowda; Maciej Kubicki
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-02-06

3.  4-[(E)-(2,4-Difluoro-phen-yl)(hydroxy-imino)meth-yl]piperidinium picrate.

Authors:  Jerry P Jasinski; Ray J Butcher; H S Yathirajan; L Mallesha; K N Mohana
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-09-05

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total
  1 in total

1.  4-[Bis(4-fluorophenyl)methyl]piperazin-1-ium 2-(2-phenylethyl)benzoate.

Authors:  Richard Betz; Thomas Gerber; Eric Hosten; Alaloor S Dayananda; Hemmige S Yathirajan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-09-30
  1 in total

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