Literature DB >> 21580982

(Anthracen-9-yl)(piperidin-1-yl)-methanone.

Hua-You Hu, Yu-Cheng Huang, Hai-Tao Yu, Yan Zhang.   

Abstract

The title compound, C(20)H(19)NO, is a substructure of CP-640186, a potent inhibitor of mammalian acetyl-coenzyme A carboxyl-ases. In the crystal structure, the amide group forms a dihedral angle of 87.0 (1)° with the plane of the anthracene unit and the piperidine ring adopts a chair conformation. Mol-ecules are arranged into layers parallel to (100) and adjacent anthracene units within layers form dihedral angles of 13.2 (1)°. C-H⋯O inter-actions from the piperidine rings to the C=O group of the amide are observed between layers.

Entities:  

Year:  2008        PMID: 21580982      PMCID: PMC2959661          DOI: 10.1107/S1600536808033205

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For further information regarding CP-640186, see: Harwood et al. (2003 ▶); Zhang et al. (2004 ▶).

Experimental

Crystal data

C20H19NO M = 289.36 Monoclinic, a = 26.393 (5) Å b = 7.3950 (15) Å c = 18.213 (4) Å β = 120.29 (3)° V = 3069.5 (14) Å3 Z = 8 Mo Kα radiation μ = 0.08 mm−1 T = 293 (2) K 0.30 × 0.10 × 0.10 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.977, T max = 0.992 2828 measured reflections 2762 independent reflections 1678 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.081 wR(F 2) = 0.278 S = 1.09 2762 reflections 199 parameters H-atom parameters constrained Δρmax = 0.32 e Å−3 Δρmin = −0.29 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808033205/bi2300sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808033205/bi2300Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H19NOF(000) = 1232
Mr = 289.36Dx = 1.252 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 781 reflections
a = 26.393 (5) Åθ = 2.4–28.0°
b = 7.3950 (15) ŵ = 0.08 mm1
c = 18.213 (4) ÅT = 293 K
β = 120.29 (3)°Block, yellow
V = 3069.5 (14) Å30.30 × 0.10 × 0.10 mm
Z = 8
Bruker SMART APEX CCD diffractometer2762 independent reflections
Radiation source: fine-focus sealed tube1678 reflections with I > 2σ(I)
graphiteRint = 0.025
φ and ω scansθmax = 25.2°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Bruker, 2000)h = −31→27
Tmin = 0.977, Tmax = 0.992k = 0→8
2828 measured reflectionsl = 0→21
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.081Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.278H-atom parameters constrained
S = 1.09w = 1/[σ2(Fo2) + (0.1523P)2 + 2.2222P] where P = (Fo2 + 2Fc2)/3
2762 reflections(Δ/σ)max < 0.001
199 parametersΔρmax = 0.32 e Å3
0 restraintsΔρmin = −0.28 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.83354 (17)0.1537 (5)0.6866 (3)0.0733 (11)
H1A0.87090.15890.69360.088*
C20.78453 (17)0.1309 (5)0.6048 (3)0.0680 (10)
H2A0.78960.12540.55790.082*
C30.72989 (15)0.1169 (5)0.5938 (2)0.0577 (9)
H3A0.69800.09930.53940.069*
C40.72079 (13)0.1286 (4)0.66384 (19)0.0472 (8)
C50.77079 (14)0.1544 (4)0.7464 (2)0.0504 (8)
C60.82684 (15)0.1679 (5)0.7541 (2)0.0611 (9)
H6A0.85960.18710.80740.073*
C70.66500 (13)0.1159 (4)0.65502 (19)0.0480 (8)
C80.65705 (14)0.1315 (4)0.7257 (2)0.0478 (8)
C90.70746 (15)0.1503 (4)0.8081 (2)0.0534 (8)
C100.76293 (14)0.1644 (4)0.8162 (2)0.0538 (9)
H10A0.79560.18090.86990.065*
C110.60162 (16)0.1229 (5)0.7191 (3)0.0626 (10)
H11A0.56820.10980.66580.075*
C120.59630 (19)0.1335 (5)0.7889 (3)0.0751 (12)
H12A0.55910.13080.78260.090*
C130.6455 (2)0.1485 (5)0.8706 (3)0.0718 (11)
H13A0.64090.15350.91800.086*
C140.69916 (19)0.1556 (5)0.8799 (2)0.0677 (10)
H14A0.73170.16420.93430.081*
C150.61267 (14)0.0678 (5)0.5689 (2)0.0524 (8)
C160.59033 (17)0.3956 (5)0.5392 (2)0.0693 (11)
H16A0.62710.41080.59220.083*
H16B0.55930.44630.54650.083*
C170.5933 (2)0.4948 (6)0.4705 (3)0.0870 (13)
H17A0.62740.45490.46800.104*
H17B0.59750.62320.48310.104*
C180.5372 (2)0.4617 (6)0.3833 (3)0.0848 (13)
H18A0.50360.51640.38280.102*
H18B0.54160.51660.33840.102*
C190.52736 (19)0.2577 (7)0.3679 (2)0.0861 (13)
H19A0.49050.23720.31560.103*
H19B0.55850.20720.36070.103*
C200.52607 (17)0.1630 (6)0.4382 (2)0.0798 (12)
H20A0.49170.20080.44060.096*
H20B0.52330.03370.42810.096*
N10.57930 (13)0.2033 (4)0.51987 (17)0.0652 (9)
O10.60244 (11)−0.0901 (3)0.54889 (16)0.0754 (9)
U11U22U33U12U13U23
C10.058 (2)0.078 (3)0.090 (3)0.0004 (18)0.042 (2)0.008 (2)
C20.076 (3)0.071 (2)0.071 (2)0.0052 (19)0.048 (2)0.0061 (19)
C30.059 (2)0.063 (2)0.0532 (19)0.0000 (16)0.0293 (17)0.0003 (15)
C40.0487 (18)0.0408 (16)0.0483 (18)0.0024 (13)0.0216 (15)0.0022 (13)
C50.0448 (17)0.0440 (17)0.0513 (18)0.0004 (13)0.0160 (15)0.0049 (14)
C60.0438 (19)0.060 (2)0.068 (2)0.0006 (15)0.0189 (17)−0.0010 (17)
C70.0475 (18)0.0449 (18)0.0438 (17)0.0006 (13)0.0173 (14)0.0000 (13)
C80.0527 (19)0.0420 (17)0.0519 (18)−0.0014 (13)0.0286 (16)0.0008 (13)
C90.059 (2)0.0469 (18)0.0481 (18)0.0035 (15)0.0229 (16)−0.0049 (14)
C100.0507 (19)0.0506 (19)0.0459 (18)0.0015 (14)0.0139 (15)0.0006 (14)
C110.059 (2)0.062 (2)0.071 (2)−0.0058 (16)0.0350 (19)−0.0031 (17)
C120.078 (3)0.077 (3)0.093 (3)−0.001 (2)0.060 (3)−0.002 (2)
C130.099 (3)0.070 (2)0.068 (2)0.011 (2)0.058 (2)0.0023 (19)
C140.084 (3)0.068 (2)0.054 (2)−0.0005 (19)0.036 (2)−0.0040 (17)
C150.0497 (18)0.057 (2)0.0485 (18)−0.0007 (15)0.0238 (15)−0.0044 (16)
C160.070 (2)0.066 (2)0.057 (2)0.0051 (18)0.0207 (19)−0.0063 (18)
C170.112 (4)0.063 (3)0.085 (3)0.003 (2)0.049 (3)0.003 (2)
C180.110 (3)0.076 (3)0.064 (2)0.013 (2)0.040 (2)0.016 (2)
C190.086 (3)0.103 (4)0.050 (2)−0.007 (2)0.020 (2)−0.003 (2)
C200.060 (2)0.092 (3)0.058 (2)−0.012 (2)0.0075 (19)0.003 (2)
N10.0575 (18)0.0608 (19)0.0531 (17)−0.0090 (14)0.0100 (14)0.0008 (14)
O10.0812 (19)0.0499 (15)0.0646 (16)−0.0093 (12)0.0144 (14)−0.0150 (12)
C1—C61.333 (5)C12—H12A0.930
C1—C21.406 (5)C13—C141.339 (6)
C1—H1A0.930C13—H13A0.930
C2—C31.356 (5)C14—H14A0.930
C2—H2A0.930C15—O11.213 (4)
C3—C41.415 (4)C15—N11.336 (4)
C3—H3A0.930C16—N11.458 (5)
C4—C71.401 (4)C16—C171.486 (6)
C4—C51.427 (4)C16—H16A0.970
C5—C101.389 (5)C16—H16B0.970
C5—C61.417 (5)C17—C181.549 (6)
C6—H6A0.930C17—H17A0.970
C7—C81.409 (4)C17—H17B0.970
C7—C151.519 (4)C18—C191.532 (6)
C8—C111.407 (5)C18—H18A0.970
C8—C91.424 (5)C18—H18B0.970
C9—C101.399 (5)C19—C201.476 (6)
C9—C141.433 (5)C19—H19A0.970
C10—H10A0.930C19—H19B0.970
C11—C121.351 (5)C20—N11.472 (4)
C11—H11A0.930C20—H20A0.970
C12—C131.401 (6)C20—H20B0.970
C6—C1—C2120.5 (3)C13—C14—C9121.5 (4)
C6—C1—H1A119.7C13—C14—H14A119.3
C2—C1—H1A119.7C9—C14—H14A119.3
C3—C2—C1120.5 (4)O1—C15—N1123.3 (3)
C3—C2—H2A119.8O1—C15—C7119.0 (3)
C1—C2—H2A119.8N1—C15—C7117.7 (3)
C2—C3—C4120.9 (3)N1—C16—C17111.5 (3)
C2—C3—H3A119.5N1—C16—H16A109.3
C4—C3—H3A119.5C17—C16—H16A109.3
C7—C4—C3122.6 (3)N1—C16—H16B109.3
C7—C4—C5119.3 (3)C17—C16—H16B109.3
C3—C4—C5118.1 (3)H16A—C16—H16B108.0
C10—C5—C6122.4 (3)C16—C17—C18110.9 (4)
C10—C5—C4119.0 (3)C16—C17—H17A109.5
C6—C5—C4118.6 (3)C18—C17—H17A109.5
C1—C6—C5121.4 (3)C16—C17—H17B109.5
C1—C6—H6A119.3C18—C17—H17B109.5
C5—C6—H6A119.3H17A—C17—H17B108.0
C4—C7—C8121.4 (3)C19—C18—C17109.2 (3)
C4—C7—C15119.3 (3)C19—C18—H18A109.8
C8—C7—C15119.0 (3)C17—C18—H18A109.8
C11—C8—C7123.0 (3)C19—C18—H18B109.8
C11—C8—C9118.2 (3)C17—C18—H18B109.8
C7—C8—C9118.7 (3)H18A—C18—H18B108.3
C10—C9—C8119.4 (3)C20—C19—C18112.6 (4)
C10—C9—C14122.4 (3)C20—C19—H19A109.1
C8—C9—C14118.2 (3)C18—C19—H19A109.1
C5—C10—C9122.0 (3)C20—C19—H19B109.1
C5—C10—H10A119.0C18—C19—H19B109.1
C9—C10—H10A119.0H19A—C19—H19B107.8
C12—C11—C8120.9 (4)N1—C20—C19110.7 (3)
C12—C11—H11A119.5N1—C20—H20A109.5
C8—C11—H11A119.5C19—C20—H20A109.5
C11—C12—C13121.6 (4)N1—C20—H20B109.5
C11—C12—H12A119.2C19—C20—H20B109.5
C13—C12—H12A119.2H20A—C20—H20B108.1
C14—C13—C12119.5 (4)C15—N1—C16125.9 (3)
C14—C13—H13A120.3C15—N1—C20119.7 (3)
C12—C13—H13A120.3C16—N1—C20114.4 (3)
C6—C1—C2—C3−2.2 (6)C8—C9—C10—C5−2.3 (5)
C1—C2—C3—C41.3 (5)C14—C9—C10—C5178.3 (3)
C2—C3—C4—C7179.6 (3)C7—C8—C11—C12178.1 (3)
C2—C3—C4—C5−0.4 (5)C9—C8—C11—C120.5 (5)
C7—C4—C5—C100.7 (4)C8—C11—C12—C13−1.7 (6)
C3—C4—C5—C10−179.3 (3)C11—C12—C13—C141.1 (6)
C7—C4—C5—C6−179.7 (3)C12—C13—C14—C90.7 (6)
C3—C4—C5—C60.3 (4)C10—C9—C14—C13177.5 (3)
C2—C1—C6—C52.2 (6)C8—C9—C14—C13−1.9 (5)
C10—C5—C6—C1178.4 (3)C4—C7—C15—O184.2 (4)
C4—C5—C6—C1−1.2 (5)C8—C7—C15—O1−90.4 (4)
C3—C4—C7—C8−178.8 (3)C4—C7—C15—N1−97.4 (4)
C5—C4—C7—C81.2 (4)C8—C7—C15—N188.0 (4)
C3—C4—C7—C156.7 (5)N1—C16—C17—C1854.6 (5)
C5—C4—C7—C15−173.3 (3)C16—C17—C18—C19−53.5 (5)
C4—C7—C8—C11178.8 (3)C17—C18—C19—C2053.9 (5)
C15—C7—C8—C11−6.7 (5)C18—C19—C20—N1−54.1 (5)
C4—C7—C8—C9−3.6 (4)O1—C15—N1—C16−177.9 (4)
C15—C7—C8—C9170.9 (3)C7—C15—N1—C163.7 (5)
C11—C8—C9—C10−178.2 (3)O1—C15—N1—C202.1 (5)
C7—C8—C9—C104.1 (4)C7—C15—N1—C20−176.3 (3)
C11—C8—C9—C141.3 (4)C17—C16—N1—C15124.0 (4)
C7—C8—C9—C14−176.5 (3)C17—C16—N1—C20−56.0 (5)
C6—C5—C10—C9−179.8 (3)C19—C20—N1—C15−125.0 (4)
C4—C5—C10—C9−0.1 (5)C19—C20—N1—C1655.1 (5)
D—H···AD—HH···AD···AD—H···A
C17—H17B···O1i0.972.413.342 (5)162
C20—H20A···O1ii0.972.713.557 (5)146
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C17—H17B⋯O1i0.972.413.342 (5)162
C20—H20A⋯O1ii0.972.713.557 (5)146

Symmetry codes: (i) ; (ii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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Authors:  H James Harwood; Stephen F Petras; Lorraine D Shelly; Lawrence M Zaccaro; David A Perry; Michael R Makowski; Diane M Hargrove; Kelly A Martin; W Ross Tracey; Justin G Chapman; William P Magee; Deepak K Dalvie; Victor F Soliman; William H Martin; Christian J Mularski; Shane A Eisenbeis
Journal:  J Biol Chem       Date:  2003-07-03       Impact factor: 5.157

3.  Crystal structure of the carboxyltransferase domain of acetyl-coenzyme A carboxylase in complex with CP-640186.

Authors:  Hailong Zhang; Benjamin Tweel; Jiang Li; Liang Tong
Journal:  Structure       Date:  2004-09       Impact factor: 5.006

  3 in total
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1.  4-[(E)-(2,4-Difluoro-phen-yl)(hydroxy-imino)meth-yl]piperidinium picrate.

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  1 in total

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