Literature DB >> 21577510

N-(2,4-Dioxo-1,3-thia-zolidin-3-yl)-2-(4-isobutyl-phen-yl)propanamide.

Hoong-Kun Fun, Jia Hao Goh, A C Vinayaka, B Kalluraya.   

Abstract

In the title compound, C(16)H(20)N(2)O(3)S, the thia-zolidine ring is approximately planar [maximum deviation = 0.020 (2) Å] and forms a dihedral angle of 86.20 (11)° with the benzene ring. The mean plane through the propanamide unit forms dihedral angles of 88.54 (12) and 76.36 (12)°, respectively, with the thia-zolidine and benzene rings. In the crystal structure, mol-ecules are linked into chains along the a axis by N-H⋯O inter-actions. These chains are inter-connected into two-dimensional arrays parallel to the ab plane by three different C-H⋯O inter-actions. The crystal structure is further stabilized by weak inter-molecular C-H⋯π and N⋯O [2.713 (2) Å] inter-actions.

Entities:  

Year:  2009        PMID: 21577510      PMCID: PMC2970021          DOI: 10.1107/S160053680903027X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to the synthesis, pharmacological properties and applications of compounds incorporating ibuprofen, see: Aktay et al. (2005 ▶); Palaska et al. (2002 ▶); Verma & Saraf (2008 ▶). For related structures, see: Fun et al. (2009a ▶,b ▶). For the stability of the temperature controller used for the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C16H20N2O3S M = 320.40 Orthorhombic, a = 9.7305 (1) Å b = 11.3991 (2) Å c = 29.6323 (4) Å V = 3286.78 (8) Å3 Z = 8 Mo Kα radiation μ = 0.21 mm−1 T = 100 K 0.24 × 0.21 × 0.09 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (; Bruker, 2005 ▶) T min = 0.951, T max = 0.981 33569 measured reflections 3783 independent reflections 2927 reflections with I > 2σ(I) R int = 0.079

Refinement

R[F 2 > 2σ(F 2)] = 0.064 wR(F 2) = 0.143 S = 1.20 3783 reflections 279 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.44 e Å−3 Δρmin = −0.26 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053680903027X/tk2517sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680903027X/tk2517Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H20N2O3SF(000) = 1360
Mr = 320.40Dx = 1.295 Mg m3
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 5195 reflections
a = 9.7305 (1) Åθ = 2.5–30.0°
b = 11.3991 (2) ŵ = 0.21 mm1
c = 29.6323 (4) ÅT = 100 K
V = 3286.78 (8) Å3Plate, colourless
Z = 80.24 × 0.21 × 0.09 mm
Bruker SMART APEXII CCD area-detector diffractometer3783 independent reflections
Radiation source: fine-focus sealed tube2927 reflections with I > 2σ(I)
graphiteRint = 0.079
φ and ω scansθmax = 27.5°, θmin = 2.5°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −12→12
Tmin = 0.951, Tmax = 0.981k = −14→13
33569 measured reflectionsl = −38→36
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.064Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.143H atoms treated by a mixture of independent and constrained refinement
S = 1.20w = 1/[σ2(Fo2) + (0.0661P)2 + 0.7928P] where P = (Fo2 + 2Fc2)/3
3783 reflections(Δ/σ)max = 0.001
279 parametersΔρmax = 0.44 e Å3
0 restraintsΔρmin = −0.26 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1)K.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.07397 (7)0.09512 (5)0.38158 (2)0.02357 (19)
O10.15979 (17)0.01544 (15)0.50523 (6)0.0235 (4)
O20.13357 (18)0.31521 (14)0.40290 (6)0.0234 (4)
O3−0.03571 (16)0.26390 (15)0.51261 (6)0.0209 (4)
N10.15610 (19)0.17543 (16)0.45864 (6)0.0154 (4)
N20.1867 (2)0.25414 (17)0.49260 (6)0.0164 (4)
C10.1250 (2)0.2144 (2)0.41525 (8)0.0169 (5)
C20.0969 (3)−0.0098 (2)0.42684 (8)0.0193 (5)
C30.1398 (2)0.0567 (2)0.46830 (8)0.0171 (5)
C40.0839 (2)0.28924 (18)0.52017 (8)0.0134 (5)
C50.1292 (2)0.35908 (19)0.56150 (8)0.0154 (5)
C60.1110 (2)0.27896 (19)0.60228 (8)0.0161 (5)
C70.2173 (3)0.2042 (2)0.61513 (8)0.0214 (5)
C80.2021 (3)0.1278 (2)0.65112 (9)0.0231 (6)
C90.0800 (3)0.1236 (2)0.67589 (8)0.0186 (5)
C10−0.0259 (3)0.1977 (2)0.66277 (8)0.0199 (5)
C11−0.0112 (3)0.2746 (2)0.62666 (8)0.0191 (5)
C120.0669 (3)0.0436 (2)0.71635 (8)0.0225 (5)
C130.1343 (3)0.0931 (2)0.75930 (8)0.0241 (6)
C140.0692 (4)0.2092 (3)0.77362 (11)0.0338 (7)
C150.1251 (4)0.0031 (3)0.79731 (10)0.0343 (7)
C160.0467 (3)0.4732 (2)0.56402 (9)0.0211 (5)
H2A0.018 (3)−0.046 (3)0.4334 (10)0.037 (8)*
H2B0.166 (3)−0.062 (2)0.4197 (9)0.029 (7)*
H50.231 (3)0.381 (2)0.5594 (8)0.014 (6)*
H70.299 (3)0.204 (2)0.5973 (9)0.027 (7)*
H80.277 (3)0.074 (2)0.6603 (9)0.023 (7)*
H10−0.111 (3)0.198 (2)0.6778 (8)0.016 (6)*
H11−0.083 (3)0.326 (3)0.6170 (9)0.028 (7)*
H12A0.107 (3)−0.031 (2)0.7094 (9)0.023 (7)*
H12B−0.031 (3)0.031 (2)0.7228 (8)0.015 (6)*
H130.232 (3)0.109 (2)0.7529 (10)0.034 (8)*
H14A0.109 (3)0.239 (3)0.7992 (11)0.037 (8)*
H14B−0.031 (3)0.197 (3)0.7814 (10)0.038 (8)*
H14C0.075 (3)0.270 (3)0.7520 (11)0.046 (9)*
H15A0.167 (3)0.035 (3)0.8251 (11)0.042 (9)*
H15B0.029 (3)−0.021 (3)0.8030 (10)0.039 (8)*
H15C0.171 (3)−0.073 (3)0.7888 (10)0.036 (8)*
H16A−0.054 (3)0.457 (2)0.5618 (9)0.030 (8)*
H16B0.078 (3)0.527 (2)0.5401 (9)0.024 (7)*
H16C0.063 (3)0.507 (3)0.5937 (10)0.032 (8)*
H1N20.271 (3)0.270 (2)0.4968 (9)0.031 (8)*
U11U22U33U12U13U23
S10.0388 (4)0.0173 (3)0.0146 (3)−0.0015 (3)−0.0018 (3)−0.0025 (2)
O10.0259 (10)0.0239 (9)0.0207 (9)0.0021 (7)−0.0022 (7)0.0052 (7)
O20.0339 (10)0.0151 (8)0.0213 (9)−0.0008 (7)−0.0007 (8)0.0013 (7)
O30.0120 (8)0.0254 (9)0.0254 (10)−0.0013 (7)−0.0005 (7)−0.0031 (7)
N10.0155 (10)0.0149 (9)0.0157 (10)−0.0010 (7)−0.0002 (8)−0.0018 (8)
N20.0140 (11)0.0208 (10)0.0144 (10)−0.0025 (8)−0.0004 (9)−0.0047 (8)
C10.0174 (12)0.0183 (12)0.0150 (12)0.0025 (9)0.0029 (10)−0.0019 (9)
C20.0265 (14)0.0139 (11)0.0174 (12)0.0006 (10)0.0028 (10)0.0025 (9)
C30.0137 (11)0.0194 (11)0.0182 (12)0.0041 (9)0.0027 (10)0.0002 (9)
C40.0152 (12)0.0118 (10)0.0132 (11)0.0013 (9)−0.0005 (9)0.0044 (8)
C50.0152 (12)0.0153 (11)0.0158 (12)−0.0012 (9)0.0000 (10)0.0026 (9)
C60.0212 (12)0.0144 (11)0.0128 (11)−0.0016 (9)−0.0006 (9)−0.0016 (9)
C70.0200 (13)0.0241 (12)0.0200 (13)0.0020 (10)0.0044 (11)0.0015 (10)
C80.0250 (14)0.0236 (13)0.0208 (13)0.0063 (10)−0.0005 (11)0.0027 (10)
C90.0284 (13)0.0162 (11)0.0113 (11)−0.0060 (10)−0.0025 (10)−0.0024 (9)
C100.0207 (13)0.0214 (12)0.0176 (12)−0.0040 (10)0.0033 (11)−0.0030 (10)
C110.0204 (13)0.0182 (11)0.0186 (13)0.0010 (10)−0.0032 (10)−0.0004 (9)
C120.0301 (15)0.0202 (13)0.0171 (13)−0.0034 (11)0.0014 (11)0.0002 (10)
C130.0297 (15)0.0264 (13)0.0163 (13)−0.0029 (11)−0.0020 (11)0.0050 (10)
C140.051 (2)0.0285 (15)0.0223 (15)0.0008 (14)−0.0058 (15)−0.0052 (13)
C150.0472 (19)0.0352 (16)0.0205 (15)−0.0025 (14)−0.0038 (13)0.0081 (12)
C160.0266 (14)0.0158 (12)0.0210 (14)0.0009 (10)0.0011 (11)−0.0008 (10)
S1—C11.758 (2)C8—H80.99 (3)
S1—C21.811 (2)C9—C101.388 (3)
O1—C31.207 (3)C9—C121.511 (3)
O2—C11.209 (3)C10—C111.391 (3)
O3—C41.220 (3)C10—H100.94 (3)
N1—N21.381 (3)C11—H110.96 (3)
N1—C31.392 (3)C12—C131.538 (4)
N1—C11.394 (3)C12—H12A0.96 (3)
N2—C41.352 (3)C12—H12B0.99 (2)
N2—H1N20.85 (3)C13—C151.526 (4)
C2—C31.503 (3)C13—C141.527 (4)
C2—H2A0.90 (3)C13—H130.99 (3)
C2—H2B0.92 (3)C14—H14A0.92 (3)
C4—C51.526 (3)C14—H14B1.01 (3)
C5—C61.525 (3)C14—H14C0.95 (3)
C5—C161.530 (3)C15—H15A0.99 (3)
C5—H51.02 (2)C15—H15B0.98 (3)
C6—C111.392 (3)C15—H15C1.01 (3)
C6—C71.393 (3)C16—H16A1.00 (3)
C7—C81.385 (3)C16—H16B0.98 (3)
C7—H70.95 (3)C16—H16C0.97 (3)
C8—C91.398 (4)
C1—S1—C293.19 (11)C10—C9—C12121.8 (2)
N2—N1—C3120.43 (19)C8—C9—C12120.6 (2)
N2—N1—C1120.79 (18)C9—C10—C11121.5 (2)
C3—N1—C1118.35 (19)C9—C10—H10121.4 (15)
C4—N2—N1118.2 (2)C11—C10—H10117.1 (15)
C4—N2—H1N2124.4 (19)C10—C11—C6120.6 (2)
N1—N2—H1N2116.8 (19)C10—C11—H11122.8 (16)
O2—C1—N1124.6 (2)C6—C11—H11116.6 (16)
O2—C1—S1125.66 (19)C9—C12—C13113.6 (2)
N1—C1—S1109.77 (16)C9—C12—H12A109.3 (16)
C3—C2—S1107.87 (16)C13—C12—H12A109.3 (16)
C3—C2—H2A107.0 (19)C9—C12—H12B109.0 (14)
S1—C2—H2A110.9 (19)C13—C12—H12B108.0 (14)
C3—C2—H2B108.1 (17)H12A—C12—H12B108 (2)
S1—C2—H2B110.2 (18)C15—C13—C14110.7 (2)
H2A—C2—H2B112 (3)C15—C13—C12109.9 (2)
O1—C3—N1123.1 (2)C14—C13—C12111.8 (2)
O1—C3—C2126.1 (2)C15—C13—H13108.6 (17)
N1—C3—C2110.7 (2)C14—C13—H13107.3 (16)
O3—C4—N2121.7 (2)C12—C13—H13108.5 (17)
O3—C4—C5123.1 (2)C13—C14—H14A111.8 (19)
N2—C4—C5115.2 (2)C13—C14—H14B109.8 (18)
C6—C5—C4106.87 (17)H14A—C14—H14B106 (3)
C6—C5—C16114.2 (2)C13—C14—H14C115 (2)
C4—C5—C16109.36 (19)H14A—C14—H14C105 (3)
C6—C5—H5107.9 (13)H14B—C14—H14C109 (3)
C4—C5—H5110.9 (13)C13—C15—H15A109.8 (18)
C16—C5—H5107.7 (13)C13—C15—H15B111.4 (18)
C11—C6—C7118.1 (2)H15A—C15—H15B111 (3)
C11—C6—C5122.1 (2)C13—C15—H15C111.5 (17)
C7—C6—C5119.8 (2)H15A—C15—H15C110 (2)
C8—C7—C6121.1 (2)H15B—C15—H15C103 (2)
C8—C7—H7121.0 (16)C5—C16—H16A110.8 (16)
C6—C7—H7117.8 (16)C5—C16—H16B109.2 (15)
C7—C8—C9121.1 (2)H16A—C16—H16B112 (2)
C7—C8—H8121.5 (15)C5—C16—H16C107.1 (17)
C9—C8—H8117.4 (15)H16A—C16—H16C107 (2)
C10—C9—C8117.6 (2)H16B—C16—H16C111 (2)
C3—N1—N2—C4−77.8 (3)N2—C4—C5—C16128.2 (2)
C1—N1—N2—C494.6 (2)C4—C5—C6—C11−89.8 (3)
N2—N1—C1—O26.7 (3)C16—C5—C6—C1131.2 (3)
C3—N1—C1—O2179.2 (2)C4—C5—C6—C787.9 (2)
N2—N1—C1—S1−174.03 (16)C16—C5—C6—C7−151.0 (2)
C3—N1—C1—S1−1.5 (2)C11—C6—C7—C8−0.1 (4)
C2—S1—C1—O2178.7 (2)C5—C6—C7—C8−177.9 (2)
C2—S1—C1—N1−0.56 (18)C6—C7—C8—C9−0.3 (4)
C1—S1—C2—C32.22 (19)C7—C8—C9—C100.7 (4)
N2—N1—C3—O1−4.9 (3)C7—C8—C9—C12−177.3 (2)
C1—N1—C3—O1−177.5 (2)C8—C9—C10—C11−0.7 (3)
N2—N1—C3—C2175.8 (2)C12—C9—C10—C11177.3 (2)
C1—N1—C3—C23.3 (3)C9—C10—C11—C60.3 (4)
S1—C2—C3—O1177.4 (2)C7—C6—C11—C100.1 (3)
S1—C2—C3—N1−3.3 (2)C5—C6—C11—C10177.8 (2)
N1—N2—C4—O3−8.5 (3)C10—C9—C12—C13−98.4 (3)
N1—N2—C4—C5169.96 (18)C8—C9—C12—C1379.5 (3)
O3—C4—C5—C670.7 (3)C9—C12—C13—C15−175.9 (2)
N2—C4—C5—C6−107.7 (2)C9—C12—C13—C1460.8 (3)
O3—C4—C5—C16−53.4 (3)
D—H···AD—HH···AD···AD—H···A
N2—H1N2···O3i0.85 (3)1.94 (3)2.713 (2)151 (2)
C2—H2A···O1ii0.89 (3)2.53 (3)3.209 (3)133 (3)
C2—H2B···O2iii0.92 (3)2.45 (3)3.371 (3)174 (2)
C5—H5···O1iv1.02 (3)2.46 (2)3.190 (3)127.6 (18)
C2—H2A···Cg2ii0.90 (3)2.99 (3)3.474 (3)116 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H1N2⋯O3i0.85 (3)1.94 (3)2.713 (2)151 (2)
C2—H2A⋯O1ii0.89 (3)2.53 (3)3.209 (3)133 (3)
C2—H2B⋯O2iii0.92 (3)2.45 (3)3.371 (3)174 (2)
C5—H5⋯O1iv1.02 (3)2.46 (2)3.190 (3)127.6 (18)
C2—H2ACg2ii0.90 (3)2.99 (3)3.474 (3)116 (2)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) . Cg2 is the centroid of the C6–C11 ring ring.

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