Literature DB >> 21582273

1-[2-(4-Isobutyl-phen-yl)propano-yl]thiosemicarbazide.

Hoong-Kun Fun, Reza Kia, Samuel Robinson Jebas, K V Sujith, B Kalluraya.   

Abstract

In the title compound, C(14)H(21)N(3)OS, inter-molecular N-H⋯O inter-actions generate ten-membered rings with R(2) (2)(10) ring motifs, whereas N-H⋯S inter-actions generate eight, 14- and 16-membered rings with R(2) (2)(8), R(4) (4)(14) and R(4) (4)(16) ring motifs, respectively. There are weak intra-molecular N-H⋯π inter-actions which might influence the conformation of the mol-ecule. The compound has a stereogenic center but the space group is centrosymmetic so the mol-ecule exists as a racemate.

Entities:  

Year:  2009        PMID: 21582273      PMCID: PMC2968597          DOI: 10.1107/S1600536809006527

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For biomedical applications of non-steroidal anti-inflammatory drugs, see, for example; Kawail et al. (2005 ▶); Klasser & Epstein (2005 ▶); Kean & Buchanan (2005 ▶); Nielsen & Bundgaard (1988 ▶); Khan & Akhter (2005 ▶); Zhao et al. (2006 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C14H21N3OS M = 279.40 Triclinic, a = 5.5347 (1) Å b = 10.6209 (3) Å c = 13.1435 (3) Å α = 97.935 (1)° β = 98.418 (1)° γ = 96.293 (1)° V = 750.30 (3) Å3 Z = 2 Mo Kα radiation μ = 0.21 mm−1 T = 100 K 0.54 × 0.32 × 0.15 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (; Bruker, 2005 ▶) T min = 0.894, T max = 0.969 18596 measured reflections 6524 independent reflections 5896 reflections with I > 2σ(I) R int = 0.018

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.096 S = 1.05 6524 reflections 191 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.68 e Å−3 Δρmin = −0.32 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809006527/dn2428sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809006527/dn2428Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H21N3OSZ = 2
Mr = 279.40F(000) = 300
Triclinic, P1Dx = 1.237 Mg m3
Hall symbol: -P 1Melting point: 335 K
a = 5.5347 (1) ÅMo Kα radiation, λ = 0.71073 Å
b = 10.6209 (3) ÅCell parameters from 9906 reflections
c = 13.1435 (3) Åθ = 2.3–38.2°
α = 97.935 (1)°µ = 0.21 mm1
β = 98.418 (1)°T = 100 K
γ = 96.293 (1)°Block, colourless
V = 750.30 (3) Å30.54 × 0.32 × 0.15 mm
Bruker SMART APEXII CCD area-detector diffractometer6524 independent reflections
Radiation source: fine-focus sealed tube5896 reflections with I > 2σ(I)
graphiteRint = 0.018
φ and ω scansθmax = 35.0°, θmin = 1.6°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −8→8
Tmin = 0.894, Tmax = 0.969k = −16→17
18596 measured reflectionsl = −20→21
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.034Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.096H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0494P)2 + 0.1966P] where P = (Fo2 + 2Fc2)/3
6524 reflections(Δ/σ)max = 0.001
191 parametersΔρmax = 0.68 e Å3
0 restraintsΔρmin = −0.32 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.30182 (3)0.806105 (17)0.407445 (14)0.01523 (5)
O10.65430 (10)0.57112 (5)0.62717 (5)0.01802 (10)
N10.87208 (11)0.64109 (6)0.50767 (5)0.01429 (10)
N20.66238 (12)0.66716 (6)0.44588 (5)0.01530 (11)
N30.74599 (12)0.87876 (6)0.52340 (5)0.01701 (11)
C10.95446 (14)0.81565 (7)0.78524 (6)0.01651 (12)
H1A0.82810.75780.80190.020*
C20.96885 (14)0.94657 (7)0.82013 (6)0.01724 (12)
H2A0.85190.97690.86040.021*
C31.15276 (14)1.03429 (7)0.79679 (6)0.01707 (12)
C41.32484 (15)0.98630 (8)0.73933 (6)0.01981 (14)
H4A1.45341.04390.72390.024*
C51.31130 (14)0.85529 (8)0.70412 (6)0.01828 (13)
H5A1.43030.82490.66500.022*
C61.12491 (13)0.76844 (7)0.72571 (5)0.01440 (11)
C71.09656 (13)0.62723 (7)0.67782 (6)0.01577 (12)
H7A1.23280.61340.63690.019*
C80.85365 (13)0.60673 (6)0.60322 (6)0.01385 (11)
C90.58753 (12)0.78460 (6)0.46377 (5)0.01334 (11)
C101.16404 (17)1.17610 (7)0.83421 (6)0.02134 (14)
H10A0.99761.20130.81730.026*
H10B1.27501.22400.79600.026*
C111.25548 (16)1.21505 (8)0.95183 (6)0.02091 (14)
H11A1.14651.16310.98930.025*
C121.5176 (2)1.18766 (13)0.98222 (10)0.0422 (3)
H12A1.56591.20841.05800.063*
H12B1.62901.24020.94850.063*
H12C1.52711.09670.95980.063*
C131.2345 (2)1.35641 (8)0.98524 (8)0.02918 (18)
H13A1.29431.38021.06010.044*
H13B1.06171.37060.97000.044*
H13C1.33391.40910.94700.044*
C141.09915 (18)0.53538 (8)0.75758 (7)0.02360 (15)
H14A1.25810.55210.80440.035*
H14B1.07470.44670.72140.035*
H14C0.96640.54840.79820.035*
H1N20.556 (3)0.6019 (14)0.4190 (11)0.027 (3)*
H1N11.013 (2)0.6698 (13)0.4891 (10)0.024 (3)*
H2N30.888 (3)0.8658 (13)0.5509 (11)0.029 (3)*
H1N30.703 (3)0.9524 (14)0.5348 (11)0.027 (3)*
U11U22U33U12U13U23
S10.01232 (8)0.01386 (8)0.01930 (9)0.00173 (5)0.00039 (6)0.00418 (6)
O10.0155 (2)0.0151 (2)0.0225 (3)−0.00111 (18)0.00474 (19)0.00054 (19)
N10.0111 (2)0.0143 (2)0.0172 (2)0.00244 (18)0.00100 (19)0.00253 (19)
N20.0134 (2)0.0117 (2)0.0190 (3)0.00211 (19)−0.0017 (2)0.00032 (19)
N30.0137 (2)0.0116 (2)0.0239 (3)0.00168 (19)−0.0009 (2)0.0003 (2)
C10.0146 (3)0.0140 (3)0.0202 (3)0.0002 (2)0.0040 (2)0.0003 (2)
C20.0164 (3)0.0145 (3)0.0197 (3)0.0017 (2)0.0028 (2)−0.0006 (2)
C30.0196 (3)0.0145 (3)0.0151 (3)−0.0006 (2)−0.0012 (2)0.0020 (2)
C40.0206 (3)0.0196 (3)0.0175 (3)−0.0040 (3)0.0034 (2)0.0018 (2)
C50.0153 (3)0.0213 (3)0.0169 (3)−0.0004 (2)0.0033 (2)−0.0002 (2)
C60.0127 (3)0.0145 (3)0.0149 (3)0.0020 (2)0.0002 (2)0.0005 (2)
C70.0147 (3)0.0148 (3)0.0173 (3)0.0043 (2)0.0008 (2)0.0007 (2)
C80.0141 (3)0.0098 (2)0.0168 (3)0.0020 (2)0.0019 (2)−0.0004 (2)
C90.0128 (3)0.0121 (2)0.0152 (3)0.0012 (2)0.0025 (2)0.0026 (2)
C100.0288 (4)0.0131 (3)0.0194 (3)−0.0001 (3)−0.0021 (3)0.0019 (2)
C110.0263 (4)0.0156 (3)0.0185 (3)−0.0009 (3)0.0011 (3)0.0004 (2)
C120.0356 (5)0.0422 (6)0.0389 (6)0.0109 (5)−0.0156 (4)−0.0103 (5)
C130.0385 (5)0.0165 (3)0.0286 (4)−0.0021 (3)0.0034 (4)−0.0032 (3)
C140.0315 (4)0.0181 (3)0.0212 (3)0.0078 (3)0.0000 (3)0.0044 (3)
S1—C91.6982 (7)C5—H5A0.9500
O1—C81.2259 (9)C6—C71.5261 (10)
N1—C81.3699 (10)C7—C81.5190 (10)
N1—N21.3927 (9)C7—C141.5270 (11)
N1—H1N10.884 (14)C7—H7A1.0000
N2—C91.3578 (9)C10—C111.5381 (12)
N2—H1N20.855 (15)C10—H10A0.9900
N3—C91.3318 (9)C10—H10B0.9900
N3—H2N30.851 (14)C11—C121.5178 (14)
N3—H1N30.843 (14)C11—C131.5269 (12)
C1—C21.3925 (10)C11—H11A1.0000
C1—C61.4019 (10)C12—H12A0.9800
C1—H1A0.9500C12—H12B0.9800
C2—C31.4002 (11)C12—H12C0.9800
C2—H2A0.9500C13—H13A0.9800
C3—C41.3957 (12)C13—H13B0.9800
C3—C101.5100 (11)C13—H13C0.9800
C4—C51.3947 (11)C14—H14A0.9800
C4—H4A0.9500C14—H14B0.9800
C5—C61.3946 (11)C14—H14C0.9800
C8—N1—N2119.30 (6)N1—C8—C7114.12 (6)
C8—N1—H1N1123.8 (9)N3—C9—N2117.81 (6)
N2—N1—H1N1114.5 (8)N3—C9—S1123.05 (5)
C9—N2—N1119.39 (6)N2—C9—S1119.12 (5)
C9—N2—H1N2119.6 (9)C3—C10—C11113.56 (6)
N1—N2—H1N2115.4 (9)C3—C10—H10A108.9
C9—N3—H2N3121.5 (10)C11—C10—H10A108.9
C9—N3—H1N3118.9 (10)C3—C10—H10B108.9
H2N3—N3—H1N3119.6 (13)C11—C10—H10B108.9
C2—C1—C6120.56 (7)H10A—C10—H10B107.7
C2—C1—H1A119.7C12—C11—C13110.83 (8)
C6—C1—H1A119.7C12—C11—C10111.70 (8)
C1—C2—C3121.12 (7)C13—C11—C10110.21 (7)
C1—C2—H2A119.4C12—C11—H11A108.0
C3—C2—H2A119.4C13—C11—H11A108.0
C4—C3—C2117.97 (7)C10—C11—H11A108.0
C4—C3—C10121.57 (7)C11—C12—H12A109.5
C2—C3—C10120.45 (7)C11—C12—H12B109.5
C5—C4—C3121.16 (7)H12A—C12—H12B109.5
C5—C4—H4A119.4C11—C12—H12C109.5
C3—C4—H4A119.4H12A—C12—H12C109.5
C6—C5—C4120.71 (7)H12B—C12—H12C109.5
C6—C5—H5A119.6C11—C13—H13A109.5
C4—C5—H5A119.6C11—C13—H13B109.5
C5—C6—C1118.45 (7)H13A—C13—H13B109.5
C5—C6—C7120.22 (6)C11—C13—H13C109.5
C1—C6—C7121.14 (6)H13A—C13—H13C109.5
C8—C7—C6104.02 (5)H13B—C13—H13C109.5
C8—C7—C14112.04 (7)C7—C14—H14A109.5
C6—C7—C14113.91 (6)C7—C14—H14B109.5
C8—C7—H7A108.9H14A—C14—H14B109.5
C6—C7—H7A108.9C7—C14—H14C109.5
C14—C7—H7A108.9H14A—C14—H14C109.5
O1—C8—N1121.87 (7)H14B—C14—H14C109.5
O1—C8—C7123.83 (7)
C8—N1—N2—C981.80 (8)C1—C6—C7—C14−59.88 (9)
C6—C1—C2—C30.06 (12)N2—N1—C8—O116.17 (10)
C1—C2—C3—C4−1.36 (11)N2—N1—C8—C7−159.10 (6)
C1—C2—C3—C10179.31 (7)C6—C7—C8—O1−91.51 (8)
C2—C3—C4—C51.40 (12)C14—C7—C8—O131.97 (10)
C10—C3—C4—C5−179.28 (7)C6—C7—C8—N183.65 (7)
C3—C4—C5—C6−0.13 (12)C14—C7—C8—N1−152.87 (6)
C4—C5—C6—C1−1.19 (11)N1—N2—C9—N314.79 (10)
C4—C5—C6—C7173.91 (7)N1—N2—C9—S1−166.70 (5)
C2—C1—C6—C51.22 (11)C4—C3—C10—C11−106.27 (9)
C2—C1—C6—C7−173.83 (7)C2—C3—C10—C1173.03 (10)
C5—C6—C7—C8−112.59 (7)C3—C10—C11—C1262.58 (11)
C1—C6—C7—C862.37 (8)C3—C10—C11—C13−173.75 (8)
C5—C6—C7—C14125.16 (8)
D—H···AD—HH···AD···AD—H···A
N2—H1N2···O1i0.857 (15)2.029 (15)2.8745 (9)169.0 (14)
N1—H1N1···S1ii0.886 (12)2.495 (13)3.3324 (7)157.8 (11)
N3—H1N3···S1iii0.842 (15)2.577 (15)3.3945 (7)164.1 (14)
C7—H7A···O1ii1.002.443.3501 (9)151
N3—H2N3···Cg10.850 (16)2.870 (14)3.5083 (7)133.4 (12)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H1N2⋯O1i0.857 (15)2.029 (15)2.8745 (9)169.0 (14)
N1—H1N1⋯S1ii0.886 (12)2.495 (13)3.3324 (7)157.8 (11)
N3—H1N3⋯S1iii0.842 (15)2.577 (15)3.3945 (7)164.1 (14)
C7—H7A⋯O1ii1.002.443.3501 (9)151
N3—H2N3⋯Cg10.850 (16)2.870 (14)3.5083 (7)133.4 (12)

Symmetry codes: (i) ; (ii) ; (iii) . Cg1 is the centroid of the C1–C6 benzene ring.

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