| Literature DB >> 21582273 |
Hoong-Kun Fun, Reza Kia, Samuel Robinson Jebas, K V Sujith, B Kalluraya.
Abstract
In the title compound, C(14)H(21)N(3)OS, inter-molecular N-H⋯O inter-actions generate ten-membered rings with R(2) (2)(10) ring motifs, whereas N-H⋯S inter-actions generate eight, 14- and 16-membered rings with R(2) (2)(8), R(4) (4)(14) and R(4) (4)(16) ring motifs, respectively. There are weak intra-molecular N-H⋯π inter-actions which might influence the conformation of the mol-ecule. The compound has a stereogenic center but the space group is centrosymmetic so the mol-ecule exists as a racemate.Entities:
Year: 2009 PMID: 21582273 PMCID: PMC2968597 DOI: 10.1107/S1600536809006527
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C14H21N3OS | |
| Triclinic, | |
| Hall symbol: -P 1 | Melting point: 335 K |
| Mo | |
| Cell parameters from 9906 reflections | |
| θ = 2.3–38.2° | |
| α = 97.935 (1)° | µ = 0.21 mm−1 |
| β = 98.418 (1)° | |
| γ = 96.293 (1)° | Block, colourless |
| 0.54 × 0.32 × 0.15 mm |
| Bruker SMART APEXII CCD area-detector diffractometer | 6524 independent reflections |
| Radiation source: fine-focus sealed tube | 5896 reflections with |
| graphite | |
| φ and ω scans | θmax = 35.0°, θmin = 1.6° |
| Absorption correction: multi-scan ( | |
| 18596 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 6524 reflections | (Δ/σ)max = 0.001 |
| 191 parameters | Δρmax = 0.68 e Å−3 |
| 0 restraints | Δρmin = −0.32 e Å−3 |
| Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| S1 | 0.30182 (3) | 0.806105 (17) | 0.407445 (14) | 0.01523 (5) | |
| O1 | 0.65430 (10) | 0.57112 (5) | 0.62717 (5) | 0.01802 (10) | |
| N1 | 0.87208 (11) | 0.64109 (6) | 0.50767 (5) | 0.01429 (10) | |
| N2 | 0.66238 (12) | 0.66716 (6) | 0.44588 (5) | 0.01530 (11) | |
| N3 | 0.74599 (12) | 0.87876 (6) | 0.52340 (5) | 0.01701 (11) | |
| C1 | 0.95446 (14) | 0.81565 (7) | 0.78524 (6) | 0.01651 (12) | |
| H1A | 0.8281 | 0.7578 | 0.8019 | 0.020* | |
| C2 | 0.96885 (14) | 0.94657 (7) | 0.82013 (6) | 0.01724 (12) | |
| H2A | 0.8519 | 0.9769 | 0.8604 | 0.021* | |
| C3 | 1.15276 (14) | 1.03429 (7) | 0.79679 (6) | 0.01707 (12) | |
| C4 | 1.32484 (15) | 0.98630 (8) | 0.73933 (6) | 0.01981 (14) | |
| H4A | 1.4534 | 1.0439 | 0.7239 | 0.024* | |
| C5 | 1.31130 (14) | 0.85529 (8) | 0.70412 (6) | 0.01828 (13) | |
| H5A | 1.4303 | 0.8249 | 0.6650 | 0.022* | |
| C6 | 1.12491 (13) | 0.76844 (7) | 0.72571 (5) | 0.01440 (11) | |
| C7 | 1.09656 (13) | 0.62723 (7) | 0.67782 (6) | 0.01577 (12) | |
| H7A | 1.2328 | 0.6134 | 0.6369 | 0.019* | |
| C8 | 0.85365 (13) | 0.60673 (6) | 0.60322 (6) | 0.01385 (11) | |
| C9 | 0.58753 (12) | 0.78460 (6) | 0.46377 (5) | 0.01334 (11) | |
| C10 | 1.16404 (17) | 1.17610 (7) | 0.83421 (6) | 0.02134 (14) | |
| H10A | 0.9976 | 1.2013 | 0.8173 | 0.026* | |
| H10B | 1.2750 | 1.2240 | 0.7960 | 0.026* | |
| C11 | 1.25548 (16) | 1.21505 (8) | 0.95183 (6) | 0.02091 (14) | |
| H11A | 1.1465 | 1.1631 | 0.9893 | 0.025* | |
| C12 | 1.5176 (2) | 1.18766 (13) | 0.98222 (10) | 0.0422 (3) | |
| H12A | 1.5659 | 1.2084 | 1.0580 | 0.063* | |
| H12B | 1.6290 | 1.2402 | 0.9485 | 0.063* | |
| H12C | 1.5271 | 1.0967 | 0.9598 | 0.063* | |
| C13 | 1.2345 (2) | 1.35641 (8) | 0.98524 (8) | 0.02918 (18) | |
| H13A | 1.2943 | 1.3802 | 1.0601 | 0.044* | |
| H13B | 1.0617 | 1.3706 | 0.9700 | 0.044* | |
| H13C | 1.3339 | 1.4091 | 0.9470 | 0.044* | |
| C14 | 1.09915 (18) | 0.53538 (8) | 0.75758 (7) | 0.02360 (15) | |
| H14A | 1.2581 | 0.5521 | 0.8044 | 0.035* | |
| H14B | 1.0747 | 0.4467 | 0.7214 | 0.035* | |
| H14C | 0.9664 | 0.5484 | 0.7982 | 0.035* | |
| H1N2 | 0.556 (3) | 0.6019 (14) | 0.4190 (11) | 0.027 (3)* | |
| H1N1 | 1.013 (2) | 0.6698 (13) | 0.4891 (10) | 0.024 (3)* | |
| H2N3 | 0.888 (3) | 0.8658 (13) | 0.5509 (11) | 0.029 (3)* | |
| H1N3 | 0.703 (3) | 0.9524 (14) | 0.5348 (11) | 0.027 (3)* |
| S1 | 0.01232 (8) | 0.01386 (8) | 0.01930 (9) | 0.00173 (5) | 0.00039 (6) | 0.00418 (6) |
| O1 | 0.0155 (2) | 0.0151 (2) | 0.0225 (3) | −0.00111 (18) | 0.00474 (19) | 0.00054 (19) |
| N1 | 0.0111 (2) | 0.0143 (2) | 0.0172 (2) | 0.00244 (18) | 0.00100 (19) | 0.00253 (19) |
| N2 | 0.0134 (2) | 0.0117 (2) | 0.0190 (3) | 0.00211 (19) | −0.0017 (2) | 0.00032 (19) |
| N3 | 0.0137 (2) | 0.0116 (2) | 0.0239 (3) | 0.00168 (19) | −0.0009 (2) | 0.0003 (2) |
| C1 | 0.0146 (3) | 0.0140 (3) | 0.0202 (3) | 0.0002 (2) | 0.0040 (2) | 0.0003 (2) |
| C2 | 0.0164 (3) | 0.0145 (3) | 0.0197 (3) | 0.0017 (2) | 0.0028 (2) | −0.0006 (2) |
| C3 | 0.0196 (3) | 0.0145 (3) | 0.0151 (3) | −0.0006 (2) | −0.0012 (2) | 0.0020 (2) |
| C4 | 0.0206 (3) | 0.0196 (3) | 0.0175 (3) | −0.0040 (3) | 0.0034 (2) | 0.0018 (2) |
| C5 | 0.0153 (3) | 0.0213 (3) | 0.0169 (3) | −0.0004 (2) | 0.0033 (2) | −0.0002 (2) |
| C6 | 0.0127 (3) | 0.0145 (3) | 0.0149 (3) | 0.0020 (2) | 0.0002 (2) | 0.0005 (2) |
| C7 | 0.0147 (3) | 0.0148 (3) | 0.0173 (3) | 0.0043 (2) | 0.0008 (2) | 0.0007 (2) |
| C8 | 0.0141 (3) | 0.0098 (2) | 0.0168 (3) | 0.0020 (2) | 0.0019 (2) | −0.0004 (2) |
| C9 | 0.0128 (3) | 0.0121 (2) | 0.0152 (3) | 0.0012 (2) | 0.0025 (2) | 0.0026 (2) |
| C10 | 0.0288 (4) | 0.0131 (3) | 0.0194 (3) | −0.0001 (3) | −0.0021 (3) | 0.0019 (2) |
| C11 | 0.0263 (4) | 0.0156 (3) | 0.0185 (3) | −0.0009 (3) | 0.0011 (3) | 0.0004 (2) |
| C12 | 0.0356 (5) | 0.0422 (6) | 0.0389 (6) | 0.0109 (5) | −0.0156 (4) | −0.0103 (5) |
| C13 | 0.0385 (5) | 0.0165 (3) | 0.0286 (4) | −0.0021 (3) | 0.0034 (4) | −0.0032 (3) |
| C14 | 0.0315 (4) | 0.0181 (3) | 0.0212 (3) | 0.0078 (3) | 0.0000 (3) | 0.0044 (3) |
| S1—C9 | 1.6982 (7) | C5—H5A | 0.9500 |
| O1—C8 | 1.2259 (9) | C6—C7 | 1.5261 (10) |
| N1—C8 | 1.3699 (10) | C7—C8 | 1.5190 (10) |
| N1—N2 | 1.3927 (9) | C7—C14 | 1.5270 (11) |
| N1—H1N1 | 0.884 (14) | C7—H7A | 1.0000 |
| N2—C9 | 1.3578 (9) | C10—C11 | 1.5381 (12) |
| N2—H1N2 | 0.855 (15) | C10—H10A | 0.9900 |
| N3—C9 | 1.3318 (9) | C10—H10B | 0.9900 |
| N3—H2N3 | 0.851 (14) | C11—C12 | 1.5178 (14) |
| N3—H1N3 | 0.843 (14) | C11—C13 | 1.5269 (12) |
| C1—C2 | 1.3925 (10) | C11—H11A | 1.0000 |
| C1—C6 | 1.4019 (10) | C12—H12A | 0.9800 |
| C1—H1A | 0.9500 | C12—H12B | 0.9800 |
| C2—C3 | 1.4002 (11) | C12—H12C | 0.9800 |
| C2—H2A | 0.9500 | C13—H13A | 0.9800 |
| C3—C4 | 1.3957 (12) | C13—H13B | 0.9800 |
| C3—C10 | 1.5100 (11) | C13—H13C | 0.9800 |
| C4—C5 | 1.3947 (11) | C14—H14A | 0.9800 |
| C4—H4A | 0.9500 | C14—H14B | 0.9800 |
| C5—C6 | 1.3946 (11) | C14—H14C | 0.9800 |
| C8—N1—N2 | 119.30 (6) | N1—C8—C7 | 114.12 (6) |
| C8—N1—H1N1 | 123.8 (9) | N3—C9—N2 | 117.81 (6) |
| N2—N1—H1N1 | 114.5 (8) | N3—C9—S1 | 123.05 (5) |
| C9—N2—N1 | 119.39 (6) | N2—C9—S1 | 119.12 (5) |
| C9—N2—H1N2 | 119.6 (9) | C3—C10—C11 | 113.56 (6) |
| N1—N2—H1N2 | 115.4 (9) | C3—C10—H10A | 108.9 |
| C9—N3—H2N3 | 121.5 (10) | C11—C10—H10A | 108.9 |
| C9—N3—H1N3 | 118.9 (10) | C3—C10—H10B | 108.9 |
| H2N3—N3—H1N3 | 119.6 (13) | C11—C10—H10B | 108.9 |
| C2—C1—C6 | 120.56 (7) | H10A—C10—H10B | 107.7 |
| C2—C1—H1A | 119.7 | C12—C11—C13 | 110.83 (8) |
| C6—C1—H1A | 119.7 | C12—C11—C10 | 111.70 (8) |
| C1—C2—C3 | 121.12 (7) | C13—C11—C10 | 110.21 (7) |
| C1—C2—H2A | 119.4 | C12—C11—H11A | 108.0 |
| C3—C2—H2A | 119.4 | C13—C11—H11A | 108.0 |
| C4—C3—C2 | 117.97 (7) | C10—C11—H11A | 108.0 |
| C4—C3—C10 | 121.57 (7) | C11—C12—H12A | 109.5 |
| C2—C3—C10 | 120.45 (7) | C11—C12—H12B | 109.5 |
| C5—C4—C3 | 121.16 (7) | H12A—C12—H12B | 109.5 |
| C5—C4—H4A | 119.4 | C11—C12—H12C | 109.5 |
| C3—C4—H4A | 119.4 | H12A—C12—H12C | 109.5 |
| C6—C5—C4 | 120.71 (7) | H12B—C12—H12C | 109.5 |
| C6—C5—H5A | 119.6 | C11—C13—H13A | 109.5 |
| C4—C5—H5A | 119.6 | C11—C13—H13B | 109.5 |
| C5—C6—C1 | 118.45 (7) | H13A—C13—H13B | 109.5 |
| C5—C6—C7 | 120.22 (6) | C11—C13—H13C | 109.5 |
| C1—C6—C7 | 121.14 (6) | H13A—C13—H13C | 109.5 |
| C8—C7—C6 | 104.02 (5) | H13B—C13—H13C | 109.5 |
| C8—C7—C14 | 112.04 (7) | C7—C14—H14A | 109.5 |
| C6—C7—C14 | 113.91 (6) | C7—C14—H14B | 109.5 |
| C8—C7—H7A | 108.9 | H14A—C14—H14B | 109.5 |
| C6—C7—H7A | 108.9 | C7—C14—H14C | 109.5 |
| C14—C7—H7A | 108.9 | H14A—C14—H14C | 109.5 |
| O1—C8—N1 | 121.87 (7) | H14B—C14—H14C | 109.5 |
| O1—C8—C7 | 123.83 (7) | ||
| C8—N1—N2—C9 | 81.80 (8) | C1—C6—C7—C14 | −59.88 (9) |
| C6—C1—C2—C3 | 0.06 (12) | N2—N1—C8—O1 | 16.17 (10) |
| C1—C2—C3—C4 | −1.36 (11) | N2—N1—C8—C7 | −159.10 (6) |
| C1—C2—C3—C10 | 179.31 (7) | C6—C7—C8—O1 | −91.51 (8) |
| C2—C3—C4—C5 | 1.40 (12) | C14—C7—C8—O1 | 31.97 (10) |
| C10—C3—C4—C5 | −179.28 (7) | C6—C7—C8—N1 | 83.65 (7) |
| C3—C4—C5—C6 | −0.13 (12) | C14—C7—C8—N1 | −152.87 (6) |
| C4—C5—C6—C1 | −1.19 (11) | N1—N2—C9—N3 | 14.79 (10) |
| C4—C5—C6—C7 | 173.91 (7) | N1—N2—C9—S1 | −166.70 (5) |
| C2—C1—C6—C5 | 1.22 (11) | C4—C3—C10—C11 | −106.27 (9) |
| C2—C1—C6—C7 | −173.83 (7) | C2—C3—C10—C11 | 73.03 (10) |
| C5—C6—C7—C8 | −112.59 (7) | C3—C10—C11—C12 | 62.58 (11) |
| C1—C6—C7—C8 | 62.37 (8) | C3—C10—C11—C13 | −173.75 (8) |
| C5—C6—C7—C14 | 125.16 (8) |
| H··· | ||||
| N2—H1N2···O1i | 0.857 (15) | 2.029 (15) | 2.8745 (9) | 169.0 (14) |
| N1—H1N1···S1ii | 0.886 (12) | 2.495 (13) | 3.3324 (7) | 157.8 (11) |
| N3—H1N3···S1iii | 0.842 (15) | 2.577 (15) | 3.3945 (7) | 164.1 (14) |
| C7—H7A···O1ii | 1.00 | 2.44 | 3.3501 (9) | 151 |
| N3—H2N3···Cg1 | 0.850 (16) | 2.870 (14) | 3.5083 (7) | 133.4 (12) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N2—H1 | 0.857 (15) | 2.029 (15) | 2.8745 (9) | 169.0 (14) |
| N1—H1 | 0.886 (12) | 2.495 (13) | 3.3324 (7) | 157.8 (11) |
| N3—H1 | 0.842 (15) | 2.577 (15) | 3.3945 (7) | 164.1 (14) |
| C7—H7 | 1.00 | 2.44 | 3.3501 (9) | 151 |
| N3—H2 | 0.850 (16) | 2.870 (14) | 3.5083 (7) | 133.4 (12) |
Symmetry codes: (i) ; (ii) ; (iii) . Cg1 is the centroid of the C1–C6 benzene ring.