Literature DB >> 22346961

Methyl (2E)-2-[(2,4-dioxo-1,3-thia-zolidin-3-yl)meth-yl]-3-phenyl-prop-2-enoate.

S Vijayakumar, S Murugavel, D Kannan, M Bakthadoss.   

Abstract

In the title compound, C(14)H(13)NO(4)S, the n class="Chemical">thia-zolidine ring is essentially planar [maximum deviation = 0.010 (2) Å for the carbonyl C atom between the N and S atoms] and is oriented at a dihedral angle of 60.1 (1)° with respect to the benzene ring. In the crystal, mol-ecules are linked into zigzag chains running along the c axis by C-H⋯O hydrogen bonds. The crystal packing is further stabilized by C-H⋯π inter-actions involving the benzene ring.

Entities:  

Year:  2012        PMID: 22346961      PMCID: PMC3275016          DOI: 10.1107/S1600536812000578

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of thia­zolidine derivatives, see: Chen et al. (2000 ▶); Jacop & Kutty (2004 ▶); Kalia et al. (2007 ▶); Vicentini et al. (1998 ▶); Vigorita et al. (1992 ▶). For resonance effects of n class="Chemical">acrylate, see: Merlino (1971 ▶); Varghese et al. (1986 ▶). For closely related structures, see: Fun et al. (2009 ▶); Vijayakumar et al. (2012 ▶).

Experimental

Crystal data

C14H13NO4S M = 291.31 Orthorhombic, a = 11.9274 (3) Å b = 15.6064 (6) Å c = 7.2949 (3) Å V = 1357.90 (8) Å3 Z = 4 Mo Kα radiation μ = 0.25 mm−1 T = 293 K 0.26 × 0.22 × 0.18 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.937, T max = 0.956 13845 measured reflections 2948 independent reflections 2576 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.030 wR(F 2) = 0.082 S = 1.03 2948 reflections 182 parameters 1 restraint H-atom parameters constrained Δρmax = 0.12 e Å−3 Δρmin = −0.22 e Å−3 Absolute structure: Flack (1983 ▶), 1348 Friedel pairs Flack parameter: 0.01 (7) Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: n class="Gene">APEX2 and SAINT (Bruker, 2004 ▶); data reduction: SAINT and XPREP (Bruker, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia (1997 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812000578/bt5778sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812000578/bt5778Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812000578/bt5778Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H13NO4SF(000) = 608
Mr = 291.31Dx = 1.425 Mg m3
Orthorhombic, Pca21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2c -2acCell parameters from 2955 reflections
a = 11.9274 (3) Åθ = 1.3–26.9°
b = 15.6064 (6) ŵ = 0.25 mm1
c = 7.2949 (3) ÅT = 293 K
V = 1357.90 (8) Å3Block, colourless
Z = 40.26 × 0.22 × 0.18 mm
Bruker APEXII CCD diffractometer2948 independent reflections
Radiation source: fine-focus sealed tube2576 reflections with I > 2σ(I)
graphiteRint = 0.026
Detector resolution: 10.0 pixels mm-1θmax = 27.0°, θmin = 2.2°
ω scansh = −9→15
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)k = −19→19
Tmin = 0.937, Tmax = 0.956l = −9→9
13845 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.030H-atom parameters constrained
wR(F2) = 0.082w = 1/[σ2(Fo2) + (0.0474P)2 + 0.0813P] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max = 0.001
2948 reflectionsΔρmax = 0.12 e Å3
182 parametersΔρmin = −0.22 e Å3
1 restraintAbsolute structure: Flack (1983), 1348 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.01 (7)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.88283 (12)0.42078 (11)0.3591 (3)0.0453 (4)
C20.88406 (18)0.46494 (13)0.1782 (3)0.0656 (6)
H2A0.94630.50490.17250.079*
H2B0.81500.49670.16090.079*
C30.89926 (13)0.30148 (13)0.1635 (3)0.0476 (4)
C40.90014 (12)0.27637 (10)0.4973 (3)0.0414 (3)
H4A0.84440.23150.48540.050*
H4B0.88270.30880.60710.050*
C51.01448 (11)0.23548 (9)0.5200 (2)0.0358 (3)
C61.02982 (13)0.15517 (9)0.5761 (2)0.0371 (3)
H61.10430.13770.58050.044*
C70.94821 (12)0.08968 (10)0.6322 (2)0.0351 (3)
C80.84781 (14)0.10827 (10)0.7234 (2)0.0415 (4)
H80.82960.16480.75080.050*
C90.77608 (14)0.04342 (11)0.7725 (2)0.0474 (4)
H90.70920.05640.83190.057*
C100.80204 (15)−0.04058 (11)0.7348 (3)0.0501 (4)
H100.7525−0.08400.76720.060*
C110.90151 (15)−0.06013 (11)0.6491 (3)0.0492 (4)
H110.9195−0.11700.62460.059*
C120.97448 (14)0.00418 (10)0.5993 (2)0.0421 (4)
H121.0421−0.00970.54310.050*
C131.11324 (12)0.29123 (10)0.4825 (2)0.0396 (3)
C141.31055 (14)0.30026 (12)0.4659 (3)0.0592 (5)
H14A1.30180.33850.36380.089*
H14B1.37370.26340.44480.089*
H14C1.32280.33300.57560.089*
N10.89204 (9)0.33305 (8)0.3393 (2)0.0387 (3)
O10.87429 (10)0.45658 (8)0.5042 (2)0.0606 (3)
O20.90570 (11)0.22625 (10)0.1267 (2)0.0704 (4)
O31.10784 (9)0.36635 (7)0.4537 (2)0.0627 (4)
O41.21042 (8)0.24908 (7)0.4864 (2)0.0562 (3)
S10.89843 (4)0.38495 (4)0.00251 (8)0.07068 (18)
U11U22U33U12U13U23
C10.0282 (7)0.0397 (8)0.0680 (12)−0.0004 (6)−0.0036 (8)0.0022 (9)
C20.0571 (11)0.0562 (12)0.0834 (16)−0.0031 (9)−0.0105 (10)0.0271 (11)
C30.0327 (8)0.0616 (11)0.0484 (10)0.0003 (7)−0.0045 (7)−0.0026 (9)
C40.0379 (8)0.0397 (8)0.0467 (9)0.0014 (6)0.0036 (7)0.0044 (8)
C50.0328 (7)0.0388 (7)0.0359 (7)−0.0008 (5)−0.0004 (6)−0.0030 (6)
C60.0333 (7)0.0420 (8)0.0360 (7)0.0000 (6)−0.0017 (6)−0.0004 (6)
C70.0354 (7)0.0388 (8)0.0312 (7)0.0002 (6)−0.0038 (6)0.0016 (6)
C80.0456 (9)0.0414 (8)0.0376 (8)0.0038 (6)0.0035 (7)0.0025 (7)
C90.0416 (9)0.0605 (10)0.0401 (9)−0.0026 (7)0.0059 (8)0.0073 (7)
C100.0526 (9)0.0543 (10)0.0434 (9)−0.0163 (8)−0.0092 (8)0.0097 (8)
C110.0621 (11)0.0373 (8)0.0482 (10)−0.0015 (7)−0.0080 (9)0.0020 (7)
C120.0442 (9)0.0401 (8)0.0419 (9)0.0055 (7)−0.0023 (7)0.0022 (7)
C130.0374 (7)0.0409 (8)0.0405 (8)−0.0027 (6)−0.0025 (7)−0.0052 (7)
C140.0339 (8)0.0728 (11)0.0709 (14)−0.0108 (8)0.0018 (9)0.0034 (11)
N10.0350 (6)0.0353 (7)0.0457 (8)−0.0001 (5)−0.0021 (6)0.0020 (6)
O10.0543 (7)0.0463 (7)0.0811 (10)0.0042 (5)−0.0015 (8)−0.0153 (8)
O20.0777 (10)0.0645 (9)0.0690 (10)0.0068 (7)−0.0084 (8)−0.0233 (8)
O30.0443 (7)0.0381 (6)0.1056 (13)−0.0058 (5)0.0005 (7)0.0012 (7)
O40.0319 (5)0.0495 (6)0.0873 (9)−0.0023 (4)0.0024 (6)0.0087 (7)
S10.0586 (3)0.1007 (4)0.0527 (3)0.0051 (2)−0.0039 (3)0.0233 (3)
C1—O11.202 (3)C7—C121.392 (2)
C1—N11.381 (2)C7—C81.400 (2)
C1—C21.489 (3)C8—C91.373 (2)
C2—S11.797 (3)C8—H80.9300
C2—H2A0.9700C9—C101.375 (2)
C2—H2B0.9700C9—H90.9300
C3—O21.207 (2)C10—C111.375 (3)
C3—N11.376 (2)C10—H100.9300
C3—S11.754 (2)C11—C121.377 (3)
C4—N11.456 (2)C11—H110.9300
C4—C51.515 (2)C12—H120.9300
C4—H4A0.9700C13—O31.1928 (19)
C4—H4B0.9700C13—O41.3330 (18)
C5—C61.331 (2)C14—O41.4445 (18)
C5—C131.490 (2)C14—H14A0.9600
C6—C71.470 (2)C14—H14B0.9600
C6—H60.9300C14—H14C0.9600
O1—C1—N1124.04 (18)C9—C8—H8119.9
O1—C1—C2124.52 (16)C7—C8—H8119.9
N1—C1—C2111.44 (18)C8—C9—C10120.69 (16)
C1—C2—S1108.14 (13)C8—C9—H9119.7
C1—C2—H2A110.1C10—C9—H9119.7
S1—C2—H2A110.1C9—C10—C11119.78 (15)
C1—C2—H2B110.1C9—C10—H10120.1
S1—C2—H2B110.1C11—C10—H10120.1
H2A—C2—H2B108.4C10—C11—C12120.23 (16)
O2—C3—N1124.05 (18)C10—C11—H11119.9
O2—C3—S1124.99 (16)C12—C11—H11119.9
N1—C3—S1110.95 (14)C11—C12—C7120.73 (16)
N1—C4—C5113.71 (13)C11—C12—H12119.6
N1—C4—H4A108.8C7—C12—H12119.6
C5—C4—H4A108.8O3—C13—O4122.40 (13)
N1—C4—H4B108.8O3—C13—C5124.31 (13)
C5—C4—H4B108.8O4—C13—C5113.29 (13)
H4A—C4—H4B107.7O4—C14—H14A109.5
C6—C5—C13119.85 (13)O4—C14—H14B109.5
C6—C5—C4123.64 (13)H14A—C14—H14B109.5
C13—C5—C4116.47 (12)O4—C14—H14C109.5
C5—C6—C7130.50 (15)H14A—C14—H14C109.5
C5—C6—H6114.8H14B—C14—H14C109.5
C7—C6—H6114.8C3—N1—C1117.22 (16)
C12—C7—C8118.24 (14)C3—N1—C4121.05 (13)
C12—C7—C6118.01 (14)C1—N1—C4121.65 (16)
C8—C7—C6123.69 (14)C13—O4—C14116.35 (12)
C9—C8—C7120.28 (15)C3—S1—C292.23 (10)
O1—C1—C2—S1179.94 (13)C6—C5—C13—O48.7 (2)
N1—C1—C2—S1−0.45 (17)C4—C5—C13—O4−173.45 (16)
N1—C4—C5—C6−142.14 (16)O2—C3—N1—C1−178.70 (15)
N1—C4—C5—C1340.1 (2)S1—C3—N1—C11.56 (16)
C13—C5—C6—C7175.87 (15)O2—C3—N1—C44.6 (2)
C4—C5—C6—C7−1.8 (3)S1—C3—N1—C4−175.10 (10)
C5—C6—C7—C12149.04 (17)O1—C1—N1—C3178.90 (14)
C5—C6—C7—C8−33.6 (3)C2—C1—N1—C3−0.71 (18)
C12—C7—C8—C9−2.2 (2)O1—C1—N1—C4−4.5 (2)
C6—C7—C8—C9−179.56 (15)C2—C1—N1—C4175.93 (14)
C7—C8—C9—C100.7 (3)C5—C4—N1—C366.50 (18)
C8—C9—C10—C110.8 (3)C5—C4—N1—C1−110.01 (16)
C9—C10—C11—C12−0.7 (3)O3—C13—O4—C144.0 (3)
C10—C11—C12—C7−1.0 (3)C5—C13—O4—C14−175.17 (15)
C8—C7—C12—C112.4 (2)O2—C3—S1—C2178.77 (16)
C6—C7—C12—C11179.87 (15)N1—C3—S1—C2−1.50 (13)
C6—C5—C13—O3−170.43 (18)C1—C2—S1—C31.09 (14)
C4—C5—C13—O37.4 (3)
Cg is the centroid of the C7–C12 benzene ring.
D—H···AD—HH···AD···AD—H···A
C2—H2A···O1i0.972.543.379 (2)145.
C9—H9···Cgii0.932.813.522 (2)134.
C12—H12···Cgiii0.932.803.541 (2)137.
Table 1

Hydrogen-bond geometry (Å, °)

Cg is the centroid of the C7–C12 benzene ring.

D—H⋯AD—HH⋯ADAD—H⋯A
C2—H2A⋯O1i0.972.543.379 (2)145
C9—H9⋯Cgii0.932.813.522 (2)134
C12—H12⋯Cgiii0.932.803.541 (2)137

Symmetry codes: (i) ; (ii) ; (iii) .

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