Literature DB >> 21779027

From unwinding to clamping - the DEAD box RNA helicase family.

Patrick Linder1, Eckhard Jankowsky.   

Abstract

RNA helicases of the DEAD box family are present in all eukaryotic cells and in many bacteria and Archaea. These highly conserved enzymes are required for RNA metabolism from transcription to degradation and are therefore important players in gene expression. DEAD box proteins use ATP to unwind short duplex RNA in an unusual fashion and remodel RNA-protein complexes, but they can also function as ATP-dependent RNA clamps to provide nucleation centres that establish larger RNA-protein complexes. Structural, mechanistic and molecular biological studies have started to reveal how these conserved proteins can perform such diverse functions and how accessory proteins have a central role in their regulation.

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Year:  2011        PMID: 21779027     DOI: 10.1038/nrm3154

Source DB:  PubMed          Journal:  Nat Rev Mol Cell Biol        ISSN: 1471-0072            Impact factor:   94.444


  140 in total

1.  Escherichia coli DbpA is an RNA helicase that requires hairpin 92 of 23S rRNA.

Authors:  C M Diges; O C Uhlenbeck
Journal:  EMBO J       Date:  2001-10-01       Impact factor: 11.598

2.  Studies on three E. coli DEAD-box helicases point to an unwinding mechanism different from that of model DNA helicases.

Authors:  Thierry Bizebard; Ilaria Ferlenghi; Isabelle Iost; Marc Dreyfus
Journal:  Biochemistry       Date:  2004-06-22       Impact factor: 3.162

3.  The exon junction complex differentially marks spliced junctions.

Authors:  Jérôme Saulière; Nazmul Haque; Scot Harms; Isabelle Barbosa; Marco Blanchette; Hervé Le Hir
Journal:  Nat Struct Mol Biol       Date:  2010-09-05       Impact factor: 15.369

4.  Structural basis for the mutually exclusive anchoring of P body components EDC3 and Tral to the DEAD box protein DDX6/Me31B.

Authors:  Felix Tritschler; Joerg E Braun; Ana Eulalio; Vincent Truffault; Elisa Izaurralde; Oliver Weichenrieder
Journal:  Mol Cell       Date:  2009-03-13       Impact factor: 17.970

5.  Structure of the exon junction core complex with a trapped DEAD-box ATPase bound to RNA.

Authors:  Christian B F Andersen; Lionel Ballut; Jesper S Johansen; Hala Chamieh; Klaus H Nielsen; Cristiano L P Oliveira; Jan Skov Pedersen; Bertrand Séraphin; Hervé Le Hir; Gregers Rom Andersen
Journal:  Science       Date:  2006-08-24       Impact factor: 47.728

6.  Modulation of the helicase activity of eIF4A by eIF4B, eIF4H, and eIF4F.

Authors:  G W Rogers; N J Richter; W F Lima; W C Merrick
Journal:  J Biol Chem       Date:  2001-06-19       Impact factor: 5.157

Review 7.  RNA helicases at work: binding and rearranging.

Authors:  Eckhard Jankowsky
Journal:  Trends Biochem Sci       Date:  2011-01       Impact factor: 13.807

8.  Ded1p, a DEAD-box protein required for translation initiation in Saccharomyces cerevisiae, is an RNA helicase.

Authors:  I Iost; M Dreyfus; P Linder
Journal:  J Biol Chem       Date:  1999-06-18       Impact factor: 5.157

9.  Biochemical and functional characterization of inositol 1,3,4,5, 6-pentakisphosphate 2-kinases.

Authors:  E B Ives; J Nichols; S R Wente; J D York
Journal:  J Biol Chem       Date:  2000-11-24       Impact factor: 5.157

10.  Synergistic activation of eIF4A by eIF4B and eIF4G.

Authors:  Klaus H Nielsen; Manja A Behrens; Yangzi He; Cristiano L P Oliveira; Lars Sottrup Jensen; Søren V Hoffmann; Jan S Pedersen; Gregers R Andersen
Journal:  Nucleic Acids Res       Date:  2010-11-26       Impact factor: 16.971

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  427 in total

1.  Cooperative assembly and dynamic disassembly of MDA5 filaments for viral dsRNA recognition.

Authors:  Alys Peisley; Cecilie Lin; Bin Wu; McGhee Orme-Johnson; Mengyuan Liu; Thomas Walz; Sun Hur
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-12       Impact factor: 11.205

Review 2.  The exon junction complex as a node of post-transcriptional networks.

Authors:  Hervé Le Hir; Jérôme Saulière; Zhen Wang
Journal:  Nat Rev Mol Cell Biol       Date:  2015-12-16       Impact factor: 94.444

Review 3.  Translation initiation of the HIV-1 mRNA.

Authors:  Théophile Ohlmann; Chloé Mengardi; Marcelo López-Lastra
Journal:  Translation (Austin)       Date:  2014-10-31

4.  MUT-14 and SMUT-1 DEAD box RNA helicases have overlapping roles in germline RNAi and endogenous siRNA formation.

Authors:  Carolyn M Phillips; Brooke E Montgomery; Peter C Breen; Elke F Roovers; Young-Soo Rim; Toshiro K Ohsumi; Martin A Newman; Josien C van Wolfswinkel; Rene F Ketting; Gary Ruvkun; Taiowa A Montgomery
Journal:  Curr Biol       Date:  2014-03-27       Impact factor: 10.834

5.  Cancer-associated mutants of RNA helicase DDX3X are defective in RNA-stimulated ATP hydrolysis.

Authors:  Leslie B Epling; Christy R Grace; Brandon R Lowe; Janet F Partridge; Eric J Enemark
Journal:  J Mol Biol       Date:  2015-02-25       Impact factor: 5.469

Review 6.  The DDX5/Dbp2 subfamily of DEAD-box RNA helicases.

Authors:  Zheng Xing; Wai Kit Ma; Elizabeth J Tran
Journal:  Wiley Interdiscip Rev RNA       Date:  2018-12-02       Impact factor: 9.957

Review 7.  How RNA-Binding Proteins Interact with RNA: Molecules and Mechanisms.

Authors:  Meredith Corley; Margaret C Burns; Gene W Yeo
Journal:  Mol Cell       Date:  2020-04-02       Impact factor: 17.970

8.  miRISC Composition Determines Target Fates in Time and Space.

Authors:  Himani Galagali; John K Kim
Journal:  Dev Cell       Date:  2018-10-22       Impact factor: 12.270

9.  Chemical modifications of DNA for study of helicase mechanisms.

Authors:  Kevin D Raney
Journal:  Bioorg Med Chem       Date:  2014-06-02       Impact factor: 3.641

Review 10.  Molecular and cellular pathogenesis of melanoma initiation and progression.

Authors:  Tarik Regad
Journal:  Cell Mol Life Sci       Date:  2013-03-27       Impact factor: 9.261

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