Literature DB >> 23008097

Multiscale models of breast cancer progression.

Anirikh Chakrabarti1, Scott Verbridge, Abraham D Stroock, Claudia Fischbach, Jeffrey D Varner.   

Abstract

Breast cancer initiation, invasion and metastasis span multiple length and time scales. Molecular events at short length scales lead to an initial tumorigenic population, which left unchecked by immune action, acts at increasingly longer length scales until eventually the cancer cells escape from the primary tumor site. This series of events is highly complex, involving multiple cell types interacting with (and shaping) the microenvironment. Multiscale mathematical models have emerged as a powerful tool to quantitatively integrate the convective-diffusion-reaction processes occurring on the systemic scale, with the molecular signaling processes occurring on the cellular and subcellular scales. In this study, we reviewed the current state of the art in cancer modeling across multiple length scales, with an emphasis on the integration of intracellular signal transduction models with pro-tumorigenic chemical and mechanical microenvironmental cues. First, we reviewed the underlying biomolecular origin of breast cancer, with a special emphasis on angiogenesis. Then, we summarized the development of tissue engineering platforms which could provide high-fidelity ex vivo experimental models to identify and validate multiscale simulations. Lastly, we reviewed top-down and bottom-up multiscale strategies that integrate subcellular networks with the microenvironment. We present models of a variety of cancers, in addition to breast cancer specific models. Taken together, we expect as the sophistication of the simulations increase, that multiscale modeling and bottom-up agent-based models in particular will become an increasingly important platform technology for basic scientific discovery, as well as the identification and validation of potentially novel therapeutic targets.

Entities:  

Mesh:

Year:  2012        PMID: 23008097      PMCID: PMC3868441          DOI: 10.1007/s10439-012-0655-8

Source DB:  PubMed          Journal:  Ann Biomed Eng        ISSN: 0090-6964            Impact factor:   3.934


  147 in total

1.  Network motifs: simple building blocks of complex networks.

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2.  Development of a three-dimensional multiscale agent-based tumor model: simulating gene-protein interaction profiles, cell phenotypes and multicellular patterns in brain cancer.

Authors:  Le Zhang; Chaitanya A Athale; Thomas S Deisboeck
Journal:  J Theor Biol       Date:  2006-07-27       Impact factor: 2.691

3.  Self-organization of engineered epithelial tubules by differential cellular motility.

Authors:  Hidetoshi Mori; Nikolce Gjorevski; Jamie L Inman; Mina J Bissell; Celeste M Nelson
Journal:  Proc Natl Acad Sci U S A       Date:  2009-08-18       Impact factor: 11.205

4.  Three-dimensional lithographically defined organotypic tissue arrays for quantitative analysis of morphogenesis and neoplastic progression.

Authors:  Celeste M Nelson; Jamie L Inman; Mina J Bissell
Journal:  Nat Protoc       Date:  2008       Impact factor: 13.491

5.  Simulating the hallmarks of cancer.

Authors:  Robert G Abbott; Stephanie Forrest; Kenneth J Pienta
Journal:  Artif Life       Date:  2006       Impact factor: 0.667

6.  Ensembles of uncertain mathematical models can identify network response to therapeutic interventions.

Authors:  Deyan Luan; Fania Szlam; Kenichi A Tanaka; Philip S Barie; Jeffrey D Varner
Journal:  Mol Biosyst       Date:  2010-09-16

7.  Phase III study of bevacizumab plus docetaxel compared with placebo plus docetaxel for the first-line treatment of human epidermal growth factor receptor 2-negative metastatic breast cancer.

Authors:  David W Miles; Arlene Chan; Luc Y Dirix; Javier Cortés; Xavier Pivot; Piotr Tomczak; Thierry Delozier; Joo Hyuk Sohn; Louise Provencher; Fabio Puglisi; Nadia Harbeck; Guenther G Steger; Andreas Schneeweiss; Andrew M Wardley; Andreas Chlistalla; Gilles Romieu
Journal:  J Clin Oncol       Date:  2010-05-24       Impact factor: 44.544

8.  Accelerated metastasis after short-term treatment with a potent inhibitor of tumor angiogenesis.

Authors:  John M L Ebos; Christina R Lee; William Cruz-Munoz; Georg A Bjarnason; James G Christensen; Robert S Kerbel
Journal:  Cancer Cell       Date:  2009-03-03       Impact factor: 31.743

9.  Maximum entropy reconstructions of dynamic signaling networks from quantitative proteomics data.

Authors:  Jason W Locasale; Alejandro Wolf-Yadlin
Journal:  PLoS One       Date:  2009-08-26       Impact factor: 3.240

10.  Benchmarks for identification of ordinary differential equations from time series data.

Authors:  Peter Gennemark; Dag Wedelin
Journal:  Bioinformatics       Date:  2009-01-28       Impact factor: 6.937

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  21 in total

1.  3-D individual cell based computational modeling of tumor cell-macrophage paracrine signaling mediated by EGF and CSF-1 gradients.

Authors:  Hildur Knutsdottir; John S Condeelis; Eirikur Palsson
Journal:  Integr Biol (Camb)       Date:  2015-12-21       Impact factor: 2.192

2.  Editorial: Special Section on Multiscale Cancer Modeling.

Authors:  Zhihui Wang; Philip K Maini
Journal:  IEEE Trans Biomed Eng       Date:  2017-02-22       Impact factor: 4.538

3.  Agent-based model of multicellular tumor spheroid evolution including cell metabolism.

Authors:  Fabrizio Cleri
Journal:  Eur Phys J E Soft Matter       Date:  2019-08-29       Impact factor: 1.890

4.  A Multiscale Model for the Self-Assembly of Coat Proteins in Bacteriophage MS2.

Authors:  Bo Wang; Junjie Zhang; Yinghao Wu
Journal:  J Chem Inf Model       Date:  2019-08-23       Impact factor: 4.956

5.  Integrating Structural Information to Study the Dynamics of Protein-Protein Interactions in Cells.

Authors:  Bo Wang; Zhong-Ru Xie; Jiawen Chen; Yinghao Wu
Journal:  Structure       Date:  2018-08-30       Impact factor: 5.006

6.  A HYBRID THREE-SCALE MODEL OF TUMOR GROWTH.

Authors:  H L Rocha; R C Almeida; E A B F Lima; A C M Resende; J T Oden; T E Yankeelov
Journal:  Math Models Methods Appl Sci       Date:  2017-11-24       Impact factor: 3.817

7.  Modeling of the metabolic energy dissipation for restricted tumor growth.

Authors:  Ivana Pajic-Lijakovic; Milan Milivojevic
Journal:  J Bioenerg Biomembr       Date:  2017-08-29       Impact factor: 2.945

Review 8.  The role of engineering approaches in analysing cancer invasion and metastasis.

Authors:  Muhammad H Zaman
Journal:  Nat Rev Cancer       Date:  2013-07-18       Impact factor: 60.716

9.  Strategies for efficient numerical implementation of hybrid multi-scale agent-based models to describe biological systems.

Authors:  Nicholas A Cilfone; Denise E Kirschner; Jennifer J Linderman
Journal:  Cell Mol Bioeng       Date:  2015-03       Impact factor: 2.321

Review 10.  Microengineered tumor models: insights & opportunities from a physical sciences-oncology perspective.

Authors:  Peter DelNero; Young Hye Song; Claudia Fischbach
Journal:  Biomed Microdevices       Date:  2013-08       Impact factor: 2.838

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