Literature DB >> 21542088

Accessing the hidden majority of marine natural products through metagenomics.

Mohamed S Donia1, Duane E Ruffner, Sheng Cao, Eric W Schmidt.   

Abstract

Tiny marine animals represent an untapped reservoir for undiscovered, bioactive natural products. However, their small size and extreme chemical variability preclude traditional chemical approaches to discovering new bioactive compounds. Here, we use a metagenomic method to directly discover and rapidly access cyanobactin class natural products from these variable samples, and provide proof-of-concept for genome-based discovery and supply of marine natural products. We also address practical optimization of complex, multistep ribosomal peptide pathways in heterologous hosts, which is still very challenging. The resulting methods and concepts will be applicable to ribosomal peptide and other biosynthetic pathways.
Copyright © 2011 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

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Year:  2011        PMID: 21542088      PMCID: PMC3397154          DOI: 10.1002/cbic.201000780

Source DB:  PubMed          Journal:  Chembiochem        ISSN: 1439-4227            Impact factor:   3.164


  20 in total

1.  Plasmid construction by homologous recombination in yeast.

Authors:  H Ma; S Kunes; P J Schatz; D Botstein
Journal:  Gene       Date:  1987       Impact factor: 3.688

2.  Identification of the putative bryostatin polyketide synthase gene cluster from "Candidatus Endobugula sertula", the uncultivated microbial symbiont of the marine bryozoan Bugula neritina.

Authors:  Sebastian Sudek; Nicole B Lopanik; Laura E Waggoner; Mark Hildebrand; Christine Anderson; Haibin Liu; Amrish Patel; David H Sherman; Margo G Haygood
Journal:  J Nat Prod       Date:  2007-01       Impact factor: 4.050

3.  Patellamide A and C biosynthesis by a microcin-like pathway in Prochloron didemni, the cyanobacterial symbiont of Lissoclinum patella.

Authors:  Eric W Schmidt; James T Nelson; David A Rasko; Sebastian Sudek; Jonathan A Eisen; Margo G Haygood; Jacques Ravel
Journal:  Proc Natl Acad Sci U S A       Date:  2005-05-09       Impact factor: 11.205

4.  The patellazoles inhibit protein synthesis at nanomolar concentrations in human colon tumor cells.

Authors:  Adam D Richardson; William Aalbersberg; Chris M Ireland
Journal:  Anticancer Drugs       Date:  2005-06       Impact factor: 2.248

5.  Total synthesis and revision of stereochemistry of the marine metabolite trunkamide A.

Authors:  P Wipf; Y Uto
Journal:  J Org Chem       Date:  2000-02-25       Impact factor: 4.354

6.  Natural combinatorial peptide libraries in cyanobacterial symbionts of marine ascidians.

Authors:  Mohamed S Donia; Brian J Hathaway; Sebastian Sudek; Margo G Haygood; M J Rosovitz; Jacques Ravel; Eric W Schmidt
Journal:  Nat Chem Biol       Date:  2006-11-05       Impact factor: 15.040

7.  Cloning and engineering of the cinnamycin biosynthetic gene cluster from Streptomyces cinnamoneus cinnamoneus DSM 40005.

Authors:  D A Widdick; H M Dodd; P Barraille; J White; T H Stein; K F Chater; M J Gasson; M J Bibb
Journal:  Proc Natl Acad Sci U S A       Date:  2003-03-17       Impact factor: 11.205

8.  A global assembly line for cyanobactins.

Authors:  Mohamed S Donia; Jacques Ravel; Eric W Schmidt
Journal:  Nat Chem Biol       Date:  2008-04-20       Impact factor: 15.040

9.  Variation in tropical reef symbiont metagenomes defined by secondary metabolism.

Authors:  Mohamed S Donia; W Florian Fricke; Jacques Ravel; Eric W Schmidt
Journal:  PLoS One       Date:  2011-03-22       Impact factor: 3.240

10.  Mollamides B and C, Cyclic hexapeptides from the indonesian tunicate Didemnum molle.

Authors:  Marwa S Donia; Bin Wang; Daniel C Dunbar; Prashant V Desai; Akshay Patny; Mitchell Avery; Mark T Hamann
Journal:  J Nat Prod       Date:  2008-06-11       Impact factor: 4.050

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  29 in total

Review 1.  Culture-independent discovery of natural products from soil metagenomes.

Authors:  Micah Katz; Bradley M Hover; Sean F Brady
Journal:  J Ind Microbiol Biotechnol       Date:  2015-11-19       Impact factor: 3.346

2.  Metabolic model for diversity-generating biosynthesis.

Authors:  Ma Diarey Tianero; Elizabeth Pierce; Shrinivasan Raghuraman; Debosmita Sardar; John A McIntosh; John R Heemstra; Zachary Schonrock; Brett C Covington; J Alan Maschek; James E Cox; Brian O Bachmann; Baldomero M Olivera; Duane E Ruffner; Eric W Schmidt
Journal:  Proc Natl Acad Sci U S A       Date:  2016-02-01       Impact factor: 11.205

3.  The secret to a successful relationship: lasting chemistry between ascidians and their symbiotic bacteria.

Authors:  Eric W Schmidt
Journal:  Invertebr Biol       Date:  2015-03-01       Impact factor: 1.250

Review 4.  The re-emergence of natural products for drug discovery in the genomics era.

Authors:  Alan L Harvey; RuAngelie Edrada-Ebel; Ronald J Quinn
Journal:  Nat Rev Drug Discov       Date:  2015-01-23       Impact factor: 84.694

5.  Species specificity of symbiosis and secondary metabolism in ascidians.

Authors:  Ma Diarey B Tianero; Jason C Kwan; Thomas P Wyche; Angela P Presson; Michael Koch; Louis R Barrows; Tim S Bugni; Eric W Schmidt
Journal:  ISME J       Date:  2014-08-29       Impact factor: 10.302

Review 6.  Comparative mass spectrometry-based metabolomics strategies for the investigation of microbial secondary metabolites.

Authors:  Brett C Covington; John A McLean; Brian O Bachmann
Journal:  Nat Prod Rep       Date:  2017-01-04       Impact factor: 13.423

7.  Ribosomal route to small-molecule diversity.

Authors:  Ma Diarey B Tianero; Mohamed S Donia; Travis S Young; Peter G Schultz; Eric W Schmidt
Journal:  J Am Chem Soc       Date:  2011-12-22       Impact factor: 15.419

8.  Complex microbiome underlying secondary and primary metabolism in the tunicate-Prochloron symbiosis.

Authors:  Mohamed S Donia; W Florian Fricke; Frédéric Partensky; James Cox; Sherif I Elshahawi; James R White; Adam M Phillippy; Michael C Schatz; Joern Piel; Margo G Haygood; Jacques Ravel; Eric W Schmidt
Journal:  Proc Natl Acad Sci U S A       Date:  2011-11-28       Impact factor: 11.205

Review 9.  Parallel lives of symbionts and hosts: chemical mutualism in marine animals.

Authors:  Maho Morita; Eric W Schmidt
Journal:  Nat Prod Rep       Date:  2018-04-25       Impact factor: 13.423

Review 10.  Origin and variation of tunicate secondary metabolites.

Authors:  Eric W Schmidt; Mohamed S Donia; John A McIntosh; W Florian Fricke; Jacques Ravel
Journal:  J Nat Prod       Date:  2012-01-10       Impact factor: 4.050

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