Literature DB >> 21541954

Dipole preserving and polarization consistent charges.

Peng Zhang1, Peng Bao, Jiali Gao.   

Abstract

A method for estimating dipole preserving and polarization consistent (DPPC) charges is described, which reproduces exactly the molecular dipole moment as well as the local, atomic hybridization dipoles determined from the corresponding wave function and can yield accurate molecular polarization. The method is based on a model described by Thole and van Duijnen and a new feature is introduced to treat molecular polarization. Thus, the DPPC method offers a convenient procedure to describe molecular polarization in applications using semiempirical models and ab initio molecular orbital theory with relatively small basis functions such as 6-31+G(d,p) or without inclusion of electron correlation; these methods tend to underestimate molecular polarizability. The trends of the DPPC partial atomic charges are found to be in good accord with those of the CM2 model, a class IV charge analysis method that has been used in a variety of applications. The DPPC method is illustrated to mimic the correct molecular polarizability in a water dimer test case and in water-halide ion complexes using the explicit polarization (X-Pol) potential with the Austin model 1 Hamiltonian.
Copyright © 2011 Wiley Periodicals, Inc.

Entities:  

Keywords:  QM/QM interactions; dipole and polarization preserving charges

Mesh:

Year:  2011        PMID: 21541954      PMCID: PMC3151328          DOI: 10.1002/jcc.21795

Source DB:  PubMed          Journal:  J Comput Chem        ISSN: 0192-8651            Impact factor:   3.376


  20 in total

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Journal:  J Chem Theory Comput       Date:  2007-11       Impact factor: 6.006

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Authors:  J J Stewart
Journal:  J Comput Aided Mol Des       Date:  1990-03       Impact factor: 3.686

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Authors:  Wangshen Xie; Modesto Orozco; Donald G Truhlar; Jiali Gao
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7.  A Non-Orthogonal Block-Localized Effective Hamiltonian Approach for Chemical and Enzymatic Reactions.

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8.  Development of a polarizable intermolecular potential function (PIPF) for liquid amides and alkanes.

Authors:  Wangshen Xie; Jingzhi Pu; Alexander D Mackerell; Jiali Gao
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9.  Class IV charge models: a new semiempirical approach in quantum chemistry.

Authors:  J W Storer; D J Giesen; C J Cramer; D G Truhlar
Journal:  J Comput Aided Mol Des       Date:  1995-02       Impact factor: 3.686

10.  Optimization of parameters for semiempirical methods V: modification of NDDO approximations and application to 70 elements.

Authors:  James J P Stewart
Journal:  J Mol Model       Date:  2007-09-09       Impact factor: 1.810

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  12 in total

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Journal:  J Chem Theory Comput       Date:  2017-01-24       Impact factor: 6.006

2.  Fragment-based quantum mechanical methods for periodic systems with Ewald summation and mean image charge convention for long-range electrostatic interactions.

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3.  Quantum mechanical force field for water with explicit electronic polarization.

Authors:  Jaebeom Han; Michael J M Mazack; Peng Zhang; Donald G Truhlar; Jiali Gao
Journal:  J Chem Phys       Date:  2013-08-07       Impact factor: 3.488

4.  Incorporation of charge transfer into the explicit polarization fragment method by grand canonical density functional theory.

Authors:  Miho Isegawa; Jiali Gao; Donald G Truhlar
Journal:  J Chem Phys       Date:  2011-08-28       Impact factor: 3.488

5.  Multilevel X-Pol: a fragment-based method with mixed quantum mechanical representations of different fragments.

Authors:  Yingjie Wang; Carlos P Sosa; Alessandro Cembran; Donald G Truhlar; Jiali Gao
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Review 6.  Predicting the Structures of Glycans, Glycoproteins, and Their Complexes.

Authors:  Robert J Woods
Journal:  Chem Rev       Date:  2018-08-09       Impact factor: 60.622

7.  Large-scale QM/MM free energy simulations of enzyme catalysis reveal the influence of charge transfer.

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Journal:  Phys Chem Chem Phys       Date:  2018-08-08       Impact factor: 3.676

8.  Quantum mechanical force field for hydrogen fluoride with explicit electronic polarization.

Authors:  Michael J M Mazack; Jiali Gao
Journal:  J Chem Phys       Date:  2014-05-28       Impact factor: 3.488

9.  Doubly Polarized QM/MM with Machine Learning Chaperone Polarizability.

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Journal:  J Chem Theory Comput       Date:  2021-11-01       Impact factor: 6.578

10.  Explicit polarization: a quantum mechanical framework for developing next generation force fields.

Authors:  Jiali Gao; Donald G Truhlar; Yingjie Wang; Michael J M Mazack; Patrick Löffler; Makenzie R Provorse; Pavel Rehak
Journal:  Acc Chem Res       Date:  2014-08-06       Impact factor: 22.384

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