Literature DB >> 22552612

Fragment-based quantum mechanical methods for periodic systems with Ewald summation and mean image charge convention for long-range electrostatic interactions.

Peng Zhang1, Donald G Truhlar, Jiali Gao.   

Abstract

We describe an Ewald-summation method to incorporate long-range electrostatic interactions into fragment-based electronic structure methods for periodic systems. The present method is an extension of the particle-mesh Ewald technique for combined quantum mechanical and molecular mechanical (QM/MM) calculations, and it has been implemented into the explicit polarization (X-Pol) potential to illustrate the computational details. As in the QM/MM-Ewald method, the X-Pol-Ewald approach is a linear-scaling electrostatic method, in which the short-range electrostatic interactions are determined explicitly in real space and the long-range Ewald pair potential is incorporated into the Fock matrix as a correction. To avoid the time-consuming Fock matrix update during the self-consistent field procedure, a mean image charge (MIC) approximation is introduced, in which the running average with a user-chosen correlation time is used to represent the long-range electrostatic correction as an average effect. Test simulations on liquid water show that the present X-Pol-Ewald method takes about 25% more CPU time than the usual X-Pol method using spherical cutoff, whereas the use of the MIC approximation reduces the extra costs for long-range electrostatic interactions by 15%. The present X-Pol-Ewald method provides a general procedure for incorporating long-range electrostatic effects into fragment-based electronic structure methods for treating biomolecular and condensed-phase systems under periodic boundary conditions.

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Year:  2012        PMID: 22552612      PMCID: PMC3517951          DOI: 10.1039/c2cp23758j

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  35 in total

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  12 in total

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