Literature DB >> 7751872

Class IV charge models: a new semiempirical approach in quantum chemistry.

J W Storer1, D J Giesen, C J Cramer, D G Truhlar.   

Abstract

We propose a new criterion for defining partial charges on atoms in molecules, namely that physical observables calculated from those partial charges should be as accurate as possible. We also propose a method to obtain such charges based on a mapping from approximate electronic wave functions. The method is illustrated by parameterizing two new charge models called AM1-CM1A and PM3-CM1P, based on experimental dipole moments and, respectively, on AM1 and PM3 semiempirical electronic wave functions. These charge models yield rms errors of 0.30 and 0.26 D, respectively, in the dipole moments of a set of 195 neutral molecules consisting of 103 molecules containing H, C, N and O, covering variations of multiple common organic functional groups, 68 fluorides, chlorides, bromides and iodides, 15 compounds containing H, C, Si or S, and 9 compounds containing C-S-O or C-N-O linkages. In addition, partial charges computed with this method agree extremely well with high-level ab initio calculations for both neutral compounds and ions. The CM1 charge models provide a more accurate point charge representation of the dipole moment than provided by most previously available partial charges, and they are far less expensive to compute.

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Year:  1995        PMID: 7751872     DOI: 10.1007/BF00117280

Source DB:  PubMed          Journal:  J Comput Aided Mol Des        ISSN: 0920-654X            Impact factor:   3.686


  2 in total

1.  AM1-SM2 and PM3-SM3 parameterized SCF solvation models for free energies in aqueous solution.

Authors:  C J Cramer; D G Truhlar
Journal:  J Comput Aided Mol Des       Date:  1992-12       Impact factor: 3.686

2.  The OPLS [optimized potentials for liquid simulations] potential functions for proteins, energy minimizations for crystals of cyclic peptides and crambin.

Authors:  W L Jorgensen; J Tirado-Rives
Journal:  J Am Chem Soc       Date:  1988-03-01       Impact factor: 15.419

  2 in total
  44 in total

1.  Synthesis and biological evaluation in U87MG glioma cells of (ethynylthiophene)sulfonamido-based hydroxamates as matrix metalloproteinase inhibitors.

Authors:  Elisa Nuti; Francesca Casalini; Salvatore Santamaria; Pamela Gabelloni; Sara Bendinelli; Eleonora Da Pozzo; Barbara Costa; Luciana Marinelli; Valeria La Pietra; Ettore Novellino; M Margarida Bernardo; Rafael Fridman; Federico Da Settimo; Claudia Martini; Armando Rossello
Journal:  Eur J Med Chem       Date:  2011-04-02       Impact factor: 6.514

2.  Development and testing of a de novo drug-design algorithm.

Authors:  Eric Pellegrini; Martin J Field
Journal:  J Comput Aided Mol Des       Date:  2003-10       Impact factor: 3.686

3.  Prediction of SAMPL2 aqueous solvation free energies and tautomeric ratios using the SM8, SM8AD, and SMD solvation models.

Authors:  Raphael F Ribeiro; Aleksandr V Marenich; Christopher J Cramer; Donald G Truhlar
Journal:  J Comput Aided Mol Des       Date:  2010-04-01       Impact factor: 3.686

4.  Analysis of the conformational stability and activity of Candida antarctica lipase B in organic solvents: insight from molecular dynamics and quantum mechanics/simulations.

Authors:  Cong Li; Tianwei Tan; Haiyang Zhang; Wei Feng
Journal:  J Biol Chem       Date:  2010-07-03       Impact factor: 5.157

5.  Application of a BOSS-Gaussian interface for QM/MM simulations of Henry and methyl transfer reactions.

Authors:  Jonah Z Vilseck; Jakub Kostal; Julian Tirado-Rives; William L Jorgensen
Journal:  J Comput Chem       Date:  2015-08-27       Impact factor: 3.376

6.  Potential energy functions for atomic-level simulations of water and organic and biomolecular systems.

Authors:  William L Jorgensen; Julian Tirado-Rives
Journal:  Proc Natl Acad Sci U S A       Date:  2005-05-03       Impact factor: 11.205

Review 7.  Classical electrostatics for biomolecular simulations.

Authors:  G Andrés Cisneros; Mikko Karttunen; Pengyu Ren; Celeste Sagui
Journal:  Chem Rev       Date:  2013-08-27       Impact factor: 60.622

Review 8.  Metal Ion Modeling Using Classical Mechanics.

Authors:  Pengfei Li; Kenneth M Merz
Journal:  Chem Rev       Date:  2017-01-03       Impact factor: 60.622

9.  Treatment of Halogen Bonding in the OPLS-AA Force Field; Application to Potent Anti-HIV Agents.

Authors:  William L Jorgensen; Patric Schyman
Journal:  J Chem Theory Comput       Date:  2012-04-03       Impact factor: 6.006

10.  Evaluation of CM5 Charges for Nonaqueous Condensed-Phase Modeling.

Authors:  Leela S Dodda; Jonah Z Vilseck; Kara J Cutrona; William L Jorgensen
Journal:  J Chem Theory Comput       Date:  2015-08-27       Impact factor: 6.006

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