Literature DB >> 21525049

Synthesizing and databasing fossil calibrations: divergence dating and beyond.

Daniel T Ksepka1, Michael J Benton, Matthew T Carrano, Maria A Gandolfo, Jason J Head, Elizabeth J Hermsen, Walter G Joyce, Kristin S Lamm, José S L Patané, Matthew J Phillips, P David Polly, Marcel Van Tuinen, Jessica L Ware, Rachel C M Warnock, James F Parham.   

Abstract

Divergence dating studies, which combine temporal data from the fossil record with branch length data from molecular phylogenetic trees, represent a rapidly expanding approach to understanding the history of life. National Evolutionary Synthesis Center hosted the first Fossil Calibrations Working Group (3-6 March, 2011, Durham, NC, USA), bringing together palaeontologists, molecular evolutionists and bioinformatics experts to present perspectives from disciplines that generate, model and use fossil calibration data. Presentations and discussions focused on channels for interdisciplinary collaboration, best practices for justifying, reporting and using fossil calibrations and roadblocks to synthesis of palaeontological and molecular data. Bioinformatics solutions were proposed, with the primary objective being a new database for vetted fossil calibrations with linkages to existing resources, targeted for a 2012 launch.

Mesh:

Year:  2011        PMID: 21525049      PMCID: PMC3210658          DOI: 10.1098/rsbl.2011.0356

Source DB:  PubMed          Journal:  Biol Lett        ISSN: 1744-9561            Impact factor:   3.703


  5 in total

Review 1.  Reading the entrails of chickens: molecular timescales of evolution and the illusion of precision.

Authors:  Dan Graur; William Martin
Journal:  Trends Genet       Date:  2004-02       Impact factor: 11.639

2.  Dates from the molecular clock: how wrong can we be?

Authors:  Mário J F Pulquério; Richard A Nichols
Journal:  Trends Ecol Evol       Date:  2006-12-08       Impact factor: 17.712

Review 3.  Paleontological evidence to date the tree of life.

Authors:  Michael J Benton; Philip C J Donoghue
Journal:  Mol Biol Evol       Date:  2006-10-17       Impact factor: 16.240

4.  Caveats on the use of fossil calibrations for molecular dating: a comment on Near et al.

Authors:  James F Parham; Randall B Irmis
Journal:  Am Nat       Date:  2008-01       Impact factor: 3.926

5.  The effects of fossil placement and calibration on divergence times and rates: an example from the termites (Insecta: Isoptera).

Authors:  Jessica L Ware; David A Grimaldi; Michael S Engel
Journal:  Arthropod Struct Dev       Date:  2009-12-16       Impact factor: 2.010

  5 in total
  5 in total

1.  Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs.

Authors:  Richard E Green; Edward L Braun; Joel Armstrong; Dent Earl; Ngan Nguyen; Glenn Hickey; Michael W Vandewege; John A St John; Salvador Capella-Gutiérrez; Todd A Castoe; Colin Kern; Matthew K Fujita; Juan C Opazo; Jerzy Jurka; Kenji K Kojima; Juan Caballero; Robert M Hubley; Arian F Smit; Roy N Platt; Christine A Lavoie; Meganathan P Ramakodi; John W Finger; Alexander Suh; Sally R Isberg; Lee Miles; Amanda Y Chong; Weerachai Jaratlerdsiri; Jaime Gongora; Christopher Moran; Andrés Iriarte; John McCormack; Shane C Burgess; Scott V Edwards; Eric Lyons; Christina Williams; Matthew Breen; Jason T Howard; Cathy R Gresham; Daniel G Peterson; Jürgen Schmitz; David D Pollock; David Haussler; Eric W Triplett; Guojie Zhang; Naoki Irie; Erich D Jarvis; Christopher A Brochu; Carl J Schmidt; Fiona M McCarthy; Brant C Faircloth; Federico G Hoffmann; Travis C Glenn; Toni Gabaldón; Benedict Paten; David A Ray
Journal:  Science       Date:  2014-12-11       Impact factor: 47.728

2.  Recent progress in paleontological methods for dating the Tree of Life.

Authors:  Michel Laurin
Journal:  Front Genet       Date:  2012-07-13       Impact factor: 4.599

3.  Best practices for justifying fossil calibrations.

Authors:  James F Parham; Philip C J Donoghue; Christopher J Bell; Tyler D Calway; Jason J Head; Patricia A Holroyd; Jun G Inoue; Randall B Irmis; Walter G Joyce; Daniel T Ksepka; José S L Patané; Nathan D Smith; James E Tarver; Marcel van Tuinen; Ziheng Yang; Kenneth D Angielczyk; Jenny M Greenwood; Christy A Hipsley; Louis Jacobs; Peter J Makovicky; Johannes Müller; Krister T Smith; Jessica M Theodor; Rachel C M Warnock; Michael J Benton
Journal:  Syst Biol       Date:  2011-11-21       Impact factor: 15.683

4.  A continuous morphological approach to study the evolution of pollen in a phylogenetic context: An example with the order Myrtales.

Authors:  Ricardo Kriebel; Mohammad Khabbazian; Kenneth J Sytsma
Journal:  PLoS One       Date:  2017-12-06       Impact factor: 3.240

5.  A North American stem turaco, and the complex biogeographic history of modern birds.

Authors:  Daniel J Field; Allison Y Hsiang
Journal:  BMC Evol Biol       Date:  2018-06-25       Impact factor: 3.260

  5 in total

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