Literature DB >> 14746989

Reading the entrails of chickens: molecular timescales of evolution and the illusion of precision.

Dan Graur1, William Martin.   

Abstract

For almost a decade now, a team of molecular evolutionists has produced a plethora of seemingly precise molecular clock estimates for divergence events ranging from the speciation of cats and dogs to lineage separations that might have occurred approximately 4 billion years ago. Because the appearance of accuracy has an irresistible allure, non-specialists frequently treat these estimates as factual. In this article, we show that all of these divergence-time estimates were generated through improper methodology on the basis of a single calibration point that has been unjustly denuded of error. The illusion of precision was achieved mainly through the conversion of statistical estimates (which by definition possess standard errors, ranges and confidence intervals) into errorless numbers. By employing such techniques successively, the time estimates of even the most ancient divergence events were made to look deceptively precise. For example, on the basis of just 15 genes, the arthropod-nematode divergence event was 'calculated' to have occurred 1167+/-83 million years ago (i.e. within a 95% confidence interval of approximately 350 million years). Were calibration and derivation uncertainties taken into proper consideration, the 95% confidence interval would have turned out to be at least 40 times larger ( approximately 14.2 billion years).

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Year:  2004        PMID: 14746989     DOI: 10.1016/j.tig.2003.12.003

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  125 in total

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2.  Evidence for a convergent slowdown in primate molecular rates and its implications for the timing of early primate evolution.

Authors:  Michael E Steiper; Erik R Seiffert
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-02       Impact factor: 11.205

3.  A hierarchical Bayesian model for calibrating estimates of species divergence times.

Authors:  Tracy A Heath
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4.  Dating primate divergences through an integrated analysis of palaeontological and molecular data.

Authors:  Richard D Wilkinson; Michael E Steiper; Christophe Soligo; Robert D Martin; Ziheng Yang; Simon Tavaré
Journal:  Syst Biol       Date:  2010-11-04       Impact factor: 15.683

5.  Advances in Time Estimation Methods for Molecular Data.

Authors:  Sudhir Kumar; S Blair Hedges
Journal:  Mol Biol Evol       Date:  2016-02-16       Impact factor: 16.240

Review 6.  Cell evolution and Earth history: stasis and revolution.

Authors:  Thomas Cavalier-Smith
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2006-06-29       Impact factor: 6.237

7.  Genomic data support the hominoid slowdown and an Early Oligocene estimate for the hominoid-cercopithecoid divergence.

Authors:  Michael E Steiper; Nathan M Young; Tika Y Sukarna
Journal:  Proc Natl Acad Sci U S A       Date:  2004-11-30       Impact factor: 11.205

8.  Strikingly variable divergence times inferred across an Amazonian butterfly 'suture zone'.

Authors:  Alaine Whinnett; Marie Zimmermann; Keith R Willmott; Nimiadina Herrera; Ricardo Mallarino; Fraser Simpson; Mathieu Joron; Gerardo Lamas; James Mallet
Journal:  Proc Biol Sci       Date:  2005-12-07       Impact factor: 5.349

9.  Not so ancient: the extant crown group of Nothofagus represents a post-Gondwanan radiation.

Authors:  Lyn G Cook; Michael D Crisp
Journal:  Proc Biol Sci       Date:  2005-12-07       Impact factor: 5.349

10.  Primate phylogenetic relationships and divergence dates inferred from complete mitochondrial genomes.

Authors:  Luca Pozzi; Jason A Hodgson; Andrew S Burrell; Kirstin N Sterner; Ryan L Raaum; Todd R Disotell
Journal:  Mol Phylogenet Evol       Date:  2014-02-28       Impact factor: 4.286

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