Literature DB >> 21523135

2,2-Dimethyl-5-[(5-methyl-furan-2-yl)methyl-idene]-1,3-dioxane-4,6-dione.

Wu-Lan Zeng1.   

Abstract

The asymmetric unit of the title compound, C(12)H(12)O(5), contains two independent mol-ecules. In each, the 1,3-dioxane ring adopts an envelope conformation with the dimethyl-substituted C atom forming the flap. The crystal structure is stabilized by weak inter-molecular C-H⋯O hydrogen bonds.

Entities:  

Year:  2011        PMID: 21523135      PMCID: PMC3051482          DOI: 10.1107/S1600536811002285

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Zeng (2010a ▶,b ▶).

Experimental

Crystal data

C12H12O5 M = 236.22 Triclinic, a = 8.9590 (18) Å b = 10.038 (2) Å c = 13.616 (3) Å α = 92.71 (3)° β = 105.99 (3)° γ = 91.67 (3)° V = 1174.7 (4) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 293 K 0.20 × 0.16 × 0.12 mm

Data collection

Bruker SMART CCD area-detector diffractometer 11592 measured reflections 5336 independent reflections 3333 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.156 S = 1.07 5336 reflections 307 parameters H-atom parameters constrained Δρmax = 0.31 e Å−3 Δρmin = −0.30 e Å−3 Data collection: SMART (Bruker, 1997 ▶); cell refinement: SAINT (Bruker, 1997 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811002285/lh5196sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811002285/lh5196Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H12O5Z = 4
Mr = 236.22F(000) = 496
Triclinic, P1Dx = 1.336 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.9590 (18) ÅCell parameters from 3333 reflections
b = 10.038 (2) Åθ = 3.1–27.5°
c = 13.616 (3) ŵ = 0.11 mm1
α = 92.71 (3)°T = 293 K
β = 105.99 (3)°Block, yellow
γ = 91.67 (3)°0.20 × 0.16 × 0.12 mm
V = 1174.7 (4) Å3
Bruker SMART CCD area-detector diffractometer3333 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.024
graphiteθmax = 27.5°, θmin = 3.1°
φ and ω scansh = −11→10
11592 measured reflectionsk = −13→13
5336 independent reflectionsl = −17→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.156H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0907P)2] where P = (Fo2 + 2Fc2)/3
5336 reflections(Δ/σ)max = 0.001
307 parametersΔρmax = 0.31 e Å3
0 restraintsΔρmin = −0.30 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O2B0.11969 (13)0.55646 (11)0.62210 (9)0.0618 (3)
O5B0.45369 (14)1.05664 (10)0.82774 (9)0.0563 (3)
O1B0.34137 (15)0.48325 (11)0.74003 (9)0.0645 (3)
C5B0.29935 (18)0.71777 (15)0.73236 (11)0.0467 (4)
O3B0.06239 (14)0.76729 (12)0.61279 (9)0.0671 (3)
O4B0.48827 (17)0.61623 (12)0.86197 (9)0.0749 (4)
C6B0.3859 (2)0.60755 (16)0.78319 (12)0.0536 (4)
C7B0.33715 (18)0.84921 (15)0.75839 (11)0.0485 (4)
H7BA0.26510.90540.72060.058*
C4B0.15441 (19)0.68642 (16)0.65155 (12)0.0522 (4)
C8B0.46201 (19)0.91860 (14)0.83032 (11)0.0481 (4)
C9B0.5954 (2)0.89135 (17)0.90245 (12)0.0564 (4)
H9BA0.63020.80700.92020.068*
C3B0.2442 (2)0.46641 (16)0.63735 (13)0.0573 (4)
C11B0.5813 (2)1.11096 (17)0.89765 (13)0.0569 (4)
C10B0.6699 (2)1.01280 (18)0.94451 (14)0.0622 (4)
H10A0.76351.02450.99550.075*
C1B0.1707 (3)0.32824 (18)0.62731 (17)0.0801 (6)
H1BA0.11410.32010.67740.120*
H1BB0.25010.26400.63810.120*
H1BC0.10080.31230.56000.120*
C2B0.3372 (3)0.4908 (2)0.56325 (16)0.0780 (6)
H2BA0.38130.58050.57490.117*
H2BB0.27080.47870.49460.117*
H2BC0.41910.42900.57280.117*
C12B0.5961 (3)1.25844 (18)0.90908 (17)0.0785 (6)
H12A0.50881.29520.86190.118*
H12B0.69031.28850.89500.118*
H12C0.59861.28740.97780.118*
O5A0.07339 (13)0.59957 (9)0.88357 (8)0.0527 (3)
O2A−0.36509 (13)0.95250 (10)0.63621 (9)0.0573 (3)
O3A−0.35857 (14)0.73997 (11)0.66614 (9)0.0617 (3)
C5A−0.14448 (18)0.87879 (13)0.76199 (11)0.0447 (3)
O1A−0.17387 (16)1.11015 (10)0.72684 (10)0.0698 (4)
C8A−0.05825 (18)0.64850 (14)0.81836 (11)0.0447 (3)
C7A−0.05103 (18)0.78842 (14)0.81679 (12)0.0468 (4)
H7AA0.03710.82770.86350.056*
C4A−0.29180 (18)0.84726 (14)0.68578 (11)0.0461 (4)
C6A−0.0910 (2)1.01900 (15)0.78701 (14)0.0596 (4)
O4A0.01460 (18)1.05984 (12)0.85763 (12)0.0924 (5)
C11A0.0546 (2)0.46486 (14)0.87915 (13)0.0529 (4)
C9A−0.1573 (2)0.54271 (14)0.77519 (13)0.0556 (4)
H9AA−0.25480.54640.72870.067*
C3A−0.2727 (2)1.06729 (15)0.62802 (13)0.0592 (4)
C10A−0.0843 (2)0.42757 (15)0.81423 (14)0.0614 (5)
H10B−0.12490.34040.79810.074*
C2A−0.3843 (3)1.17833 (18)0.59790 (17)0.0892 (7)
H2AA−0.43851.19280.64900.134*
H2AB−0.45781.15380.53320.134*
H2AC−0.32731.25880.59240.134*
C12A0.1835 (2)0.39080 (17)0.94262 (15)0.0713 (5)
H12D0.15690.29680.93330.107*
H12E0.20090.41901.01340.107*
H12F0.27630.40850.92230.107*
C1A−0.1792 (3)1.0368 (2)0.55522 (18)0.0901 (7)
H1AA−0.11150.96590.57980.135*
H1AB−0.11821.11490.54990.135*
H1AC−0.24751.00990.48910.135*
U11U22U33U12U13U23
O2B0.0499 (7)0.0631 (7)0.0632 (7)−0.0012 (5)0.0031 (6)−0.0101 (6)
O5B0.0605 (7)0.0498 (6)0.0555 (6)0.0040 (5)0.0110 (6)0.0001 (5)
O1B0.0751 (9)0.0494 (6)0.0566 (7)0.0003 (5)−0.0020 (6)0.0017 (5)
C5B0.0457 (9)0.0530 (8)0.0388 (8)0.0032 (6)0.0071 (7)0.0021 (6)
O3B0.0566 (8)0.0765 (8)0.0591 (7)0.0159 (6)0.0000 (6)0.0020 (6)
O4B0.0855 (10)0.0592 (7)0.0587 (8)0.0038 (6)−0.0165 (7)0.0077 (6)
C6B0.0573 (10)0.0513 (9)0.0462 (9)0.0001 (7)0.0048 (8)0.0017 (7)
C7B0.0483 (9)0.0521 (8)0.0441 (8)0.0068 (7)0.0102 (7)0.0045 (7)
C4B0.0492 (9)0.0614 (9)0.0452 (8)0.0050 (7)0.0119 (7)0.0006 (7)
C8B0.0540 (9)0.0444 (8)0.0448 (8)0.0049 (6)0.0119 (7)0.0017 (6)
C9B0.0564 (10)0.0574 (9)0.0510 (9)0.0078 (7)0.0073 (8)0.0010 (8)
C3B0.0585 (11)0.0549 (9)0.0519 (9)0.0040 (7)0.0055 (8)−0.0035 (7)
C11B0.0587 (11)0.0580 (10)0.0537 (9)−0.0044 (8)0.0174 (8)−0.0079 (8)
C10B0.0556 (11)0.0672 (11)0.0557 (10)−0.0018 (8)0.0041 (8)−0.0068 (8)
C1B0.0866 (15)0.0621 (11)0.0799 (13)−0.0109 (10)0.0070 (12)−0.0092 (10)
C2B0.0880 (15)0.0808 (13)0.0711 (12)0.0114 (11)0.0326 (12)−0.0039 (10)
C12B0.0895 (16)0.0570 (11)0.0872 (14)−0.0067 (10)0.0246 (12)−0.0075 (10)
O5A0.0561 (7)0.0374 (5)0.0592 (7)0.0039 (4)0.0061 (5)0.0076 (5)
O2A0.0550 (7)0.0492 (6)0.0600 (7)0.0048 (5)0.0018 (5)0.0103 (5)
O3A0.0549 (7)0.0477 (6)0.0712 (8)−0.0089 (5)0.0001 (6)0.0026 (5)
C5A0.0480 (9)0.0354 (7)0.0479 (8)0.0017 (6)0.0090 (7)0.0018 (6)
O1A0.0849 (9)0.0341 (5)0.0708 (8)0.0066 (5)−0.0116 (7)0.0015 (5)
C8A0.0480 (9)0.0367 (7)0.0473 (8)0.0040 (6)0.0092 (7)0.0059 (6)
C7A0.0463 (9)0.0392 (7)0.0506 (8)−0.0023 (6)0.0073 (7)−0.0013 (6)
C4A0.0493 (9)0.0410 (8)0.0469 (8)0.0027 (6)0.0113 (7)0.0024 (6)
C6A0.0624 (11)0.0376 (8)0.0660 (11)0.0023 (7)−0.0038 (9)0.0035 (7)
O4A0.0940 (11)0.0423 (6)0.1015 (11)−0.0076 (6)−0.0370 (9)0.0016 (7)
C11A0.0673 (11)0.0376 (7)0.0568 (9)0.0069 (7)0.0209 (9)0.0080 (7)
C9A0.0588 (10)0.0407 (8)0.0623 (10)−0.0016 (7)0.0094 (8)0.0012 (7)
C3A0.0724 (12)0.0395 (8)0.0562 (10)0.0010 (7)0.0018 (9)0.0059 (7)
C10A0.0763 (13)0.0325 (7)0.0738 (11)−0.0008 (7)0.0185 (10)0.0026 (7)
C2A0.1048 (18)0.0537 (11)0.0846 (14)0.0204 (10)−0.0177 (12)0.0118 (10)
C12A0.0846 (14)0.0530 (10)0.0762 (12)0.0200 (9)0.0180 (11)0.0194 (9)
C1A0.1165 (19)0.0727 (13)0.0917 (15)−0.0048 (12)0.0447 (15)0.0214 (12)
O2B—C4B1.348 (2)O5A—C11A1.3542 (17)
O2B—C3B1.433 (2)O5A—C8A1.3851 (18)
O5B—C11B1.351 (2)O2A—C4A1.3662 (18)
O5B—C8B1.3914 (17)O2A—C3A1.425 (2)
O1B—C6B1.354 (2)O3A—C4A1.1985 (19)
O1B—C3B1.428 (2)C5A—C7A1.358 (2)
C5B—C7B1.358 (2)C5A—C4A1.452 (2)
C5B—C6B1.460 (2)C5A—C6A1.467 (2)
C5B—C4B1.467 (2)O1A—C6A1.3545 (19)
O3B—C4B1.2070 (19)O1A—C3A1.431 (2)
O4B—C6B1.202 (2)C8A—C9A1.364 (2)
C7B—C8B1.408 (2)C8A—C7A1.4056 (19)
C7B—H7BA0.9300C7A—H7AA0.9300
C8B—C9B1.366 (2)C6A—O4A1.194 (2)
C9B—C10B1.391 (2)C11A—C10A1.344 (3)
C9B—H9BA0.9300C11A—C12A1.481 (2)
C3B—C2B1.499 (3)C9A—C10A1.399 (2)
C3B—C1B1.502 (2)C9A—H9AA0.9300
C11B—C10B1.354 (2)C3A—C1A1.491 (3)
C11B—C12B1.480 (2)C3A—C2A1.514 (2)
C10B—H10A0.9300C10A—H10B0.9300
C1B—H1BA0.9600C2A—H2AA0.9600
C1B—H1BB0.9600C2A—H2AB0.9600
C1B—H1BC0.9600C2A—H2AC0.9600
C2B—H2BA0.9600C12A—H12D0.9600
C2B—H2BB0.9600C12A—H12E0.9600
C2B—H2BC0.9600C12A—H12F0.9600
C12B—H12A0.9600C1A—H1AA0.9600
C12B—H12B0.9600C1A—H1AB0.9600
C12B—H12C0.9600C1A—H1AC0.9600
C4B—O2B—C3B118.43 (13)C11A—O5A—C8A107.77 (13)
C11B—O5B—C8B107.37 (13)C4A—O2A—C3A118.26 (13)
C6B—O1B—C3B119.91 (13)C7A—C5A—C4A125.38 (14)
C7B—C5B—C6B124.95 (15)C7A—C5A—C6A115.42 (15)
C7B—C5B—C4B116.48 (14)C4A—C5A—C6A119.16 (13)
C6B—C5B—C4B118.43 (15)C6A—O1A—C3A119.26 (12)
O4B—C6B—O1B116.99 (15)C9A—C8A—O5A108.02 (13)
O4B—C6B—C5B126.11 (16)C9A—C8A—C7A139.38 (15)
O1B—C6B—C5B116.81 (14)O5A—C8A—C7A112.60 (13)
C5B—C7B—C8B133.72 (14)C5A—C7A—C8A134.05 (16)
C5B—C7B—H7BA113.1C5A—C7A—H7AA113.0
C8B—C7B—H7BA113.1C8A—C7A—H7AA113.0
O3B—C4B—O2B118.18 (16)O3A—C4A—O2A117.16 (15)
O3B—C4B—C5B124.96 (16)O3A—C4A—C5A126.53 (14)
O2B—C4B—C5B116.81 (14)O2A—C4A—C5A116.19 (13)
C9B—C8B—O5B107.91 (15)O4A—C6A—O1A117.49 (15)
C9B—C8B—C7B138.86 (15)O4A—C6A—C5A125.89 (14)
O5B—C8B—C7B113.20 (13)O1A—C6A—C5A116.55 (15)
C8B—C9B—C10B107.48 (16)C10A—C11A—O5A109.20 (14)
C8B—C9B—H9BA126.3C10A—C11A—C12A133.71 (15)
C10B—C9B—H9BA126.3O5A—C11A—C12A117.09 (16)
O1B—C3B—O2B110.13 (13)C8A—C9A—C10A106.92 (16)
O1B—C3B—C2B110.27 (16)C8A—C9A—H9AA126.5
O2B—C3B—C2B109.85 (15)C10A—C9A—H9AA126.5
O1B—C3B—C1B105.73 (14)O2A—C3A—O1A109.72 (13)
O2B—C3B—C1B106.35 (16)O2A—C3A—C1A110.21 (15)
C2B—C3B—C1B114.36 (16)O1A—C3A—C1A110.72 (17)
O5B—C11B—C10B109.69 (15)O2A—C3A—C2A106.18 (16)
O5B—C11B—C12B116.80 (16)O1A—C3A—C2A105.14 (14)
C10B—C11B—C12B133.51 (18)C1A—C3A—C2A114.63 (17)
C11B—C10B—C9B107.55 (17)C11A—C10A—C9A108.08 (15)
C11B—C10B—H10A126.2C11A—C10A—H10B126.0
C9B—C10B—H10A126.2C9A—C10A—H10B126.0
C3B—C1B—H1BA109.5C3A—C2A—H2AA109.5
C3B—C1B—H1BB109.5C3A—C2A—H2AB109.5
H1BA—C1B—H1BB109.5H2AA—C2A—H2AB109.5
C3B—C1B—H1BC109.5C3A—C2A—H2AC109.5
H1BA—C1B—H1BC109.5H2AA—C2A—H2AC109.5
H1BB—C1B—H1BC109.5H2AB—C2A—H2AC109.5
C3B—C2B—H2BA109.5C11A—C12A—H12D109.5
C3B—C2B—H2BB109.5C11A—C12A—H12E109.5
H2BA—C2B—H2BB109.5H12D—C12A—H12E109.5
C3B—C2B—H2BC109.5C11A—C12A—H12F109.5
H2BA—C2B—H2BC109.5H12D—C12A—H12F109.5
H2BB—C2B—H2BC109.5H12E—C12A—H12F109.5
C11B—C12B—H12A109.5C3A—C1A—H1AA109.5
C11B—C12B—H12B109.5C3A—C1A—H1AB109.5
H12A—C12B—H12B109.5H1AA—C1A—H1AB109.5
C11B—C12B—H12C109.5C3A—C1A—H1AC109.5
H12A—C12B—H12C109.5H1AA—C1A—H1AC109.5
H12B—C12B—H12C109.5H1AB—C1A—H1AC109.5
D—H···AD—HH···AD···AD—H···A
C1B—H1BC···O3Bi0.962.483.434 (3)170
C10B—H10A···O4Aii0.932.603.448 (3)153
C10A—H10B···O1Aiii0.932.443.343 (2)163
C2A—H2AB···O2Aiv0.962.573.524 (3)170
C1A—H1AA···O3B0.962.553.496 (3)170
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C1B—H1BC⋯O3Bi0.962.483.434 (3)170
C10B—H10A⋯O4Aii0.932.603.448 (3)153
C10A—H10B⋯O1Aiii0.932.443.343 (2)163
C2A—H2AB⋯O2Aiv0.962.573.524 (3)170
C1A—H1AA⋯O3B0.962.553.496 (3)170

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  (E)-2,2-Dimethyl-5-(3-phenyl-allyl-idene)-1,3-dioxane-4,6-dione.

Authors:  Wu-Lan Zeng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-10-23

3.  5-(4-Fluoro-benzyl-idene)-2,2-dimethyl-1,3-dioxane-4,6-dione.

Authors:  Wu-Lan Zeng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-21
  3 in total
  3 in total

1.  5-(3,4-Dimethyl-benzyl-idene)-2,2-dimethyl-1,3-dioxane-4,6-dione.

Authors:  Wu-Lan Zeng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-05-07

2.  2,2-Dimethyl-5-(2,3,4-trimeth-oxy-benzyl-idene)-1,3-dioxane-4,6-dione.

Authors:  Wu-Lan Zeng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-06

3.  5,5'-[(2,4-Dichloro-phen-yl)methyl-ene]bis-(2,2-dimethyl-1,3-dioxane-4,6-dione).

Authors:  Wu-Lan Zeng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-02
  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.