Literature DB >> 21522940

5-Chloro-1-(4-meth-oxy-benz-yl)indoline-2,3-dione.

Weiyao Wu1, Tingting Zheng, Shengli Cao, Zhichang Xiao.   

Abstract

In the title compound, C(16)H(12)ClNO(3), an arm-like 4-meth-oxy-benzene links to 5-chloro-indoline-2,3-dione through a methyl-ene group, with a dihedral angle between the mean planes of the benzene ring and the indole moiety of 88.44 (8)°. In the crystal, weak inter-molecular C-H⋯O and π-π stacking inter-actions [centroid-centroid distance = 3.383 (3) Å] link the mol-ecules together to form a three-dimensional framework.

Entities:  

Year:  2011        PMID: 21522940      PMCID: PMC3051544          DOI: 10.1107/S1600536810052876

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the anti­tumor activity of N-benzyl isatin analogs, see: Vine et al. (2007 ▶); Matesic et al. (2008 ▶); Penthala et al. (2010 ▶). For the preparation of the title compound, see: Itoh et al. (2009 ▶).

Experimental

Crystal data

C16H12ClNO3 M = 301.72 Orthorhombic, a = 7.5318 (17) Å b = 16.587 (4) Å c = 11.220 (3) Å V = 1401.7 (6) Å3 Z = 4 Mo Kα radiation μ = 0.28 mm−1 T = 296 K 0.30 × 0.22 × 0.10 mm

Data collection

Bruker APEXII CCD area-detector diffractometer 7665 measured reflections 3259 independent reflections 2113 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.091 S = 1.01 3259 reflections 190 parameters 1 restraint H-atom parameters constrained Δρmax = 0.11 e Å−3 Δρmin = −0.14 e Å−3 Absolute structure: Flack (1983 ▶), 1514 Friedel pairs Flack parameter: −0.01 (7) Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: APEX2 and SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810052876/zq2080sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810052876/zq2080Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H12ClNO3Z = 4
Mr = 301.72F(000) = 624
Orthorhombic, Pna21Dx = 1.430 Mg m3Dm = 1.430 Mg m3Dm measured by not measured
Hall symbol: P 2c -2nMo Kα radiation, λ = 0.71073 Å
a = 7.5318 (17) ŵ = 0.28 mm1
b = 16.587 (4) ÅT = 296 K
c = 11.220 (3) ÅBlock, red
V = 1401.7 (6) Å30.30 × 0.22 × 0.10 mm
Bruker APEXII CCD area-detector diffractometer2113 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.029
graphiteθmax = 27.9°, θmin = 2.2°
φ and ω scansh = −9→6
7665 measured reflectionsk = −21→21
3259 independent reflectionsl = −14→14
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.040H-atom parameters constrained
wR(F2) = 0.091w = 1/[σ2(Fo2) + (0.0356P)2 + 0.0529P] where P = (Fo2 + 2Fc2)/3
S = 1.01(Δ/σ)max < 0.001
3259 reflectionsΔρmax = 0.11 e Å3
190 parametersΔρmin = −0.14 e Å3
1 restraintAbsolute structure: Flack (1983), 1514 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: −0.01 (7)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.68342 (11)0.09999 (5)0.75885 (8)0.0978 (3)
O11.0165 (3)0.41051 (12)0.32537 (18)0.0858 (6)
O21.0012 (3)0.23283 (12)0.33272 (17)0.0861 (6)
O30.1766 (2)0.61539 (11)0.48186 (16)0.0694 (5)
N10.8772 (3)0.39659 (11)0.50677 (17)0.0571 (5)
C10.4538 (4)0.61020 (13)0.5928 (2)0.0611 (7)
H1A0.41970.65180.64350.073*
C20.3403 (3)0.58404 (13)0.5057 (2)0.0542 (6)
C30.3907 (3)0.52070 (13)0.4320 (2)0.0573 (6)
H3A0.31270.50140.37450.069*
C40.5565 (3)0.48649 (13)0.4443 (2)0.0545 (6)
H4A0.59030.44480.39370.065*
C50.6734 (3)0.51321 (13)0.5309 (2)0.0528 (6)
C60.6183 (4)0.57500 (13)0.6055 (2)0.0600 (6)
H6A0.69400.59300.66530.072*
C70.8599 (3)0.48135 (14)0.5399 (2)0.0656 (7)
H7A0.93620.51330.48870.079*
H7B0.90120.48810.62120.079*
C80.9424 (3)0.27675 (16)0.4091 (2)0.0619 (6)
C90.9526 (3)0.37002 (16)0.4045 (2)0.0624 (6)
C100.8176 (3)0.33139 (13)0.5770 (2)0.0489 (5)
C110.8551 (3)0.25832 (13)0.52206 (19)0.0515 (5)
C120.7381 (3)0.33395 (14)0.6865 (2)0.0585 (6)
H12A0.71280.38290.72320.070*
C130.6964 (3)0.26183 (16)0.7410 (2)0.0619 (6)
H13A0.64160.26210.81530.074*
C140.7354 (3)0.18880 (15)0.6861 (2)0.0611 (6)
C150.8143 (3)0.18620 (13)0.5764 (2)0.0588 (6)
H15A0.83960.13730.53970.071*
C160.1141 (4)0.67967 (17)0.5534 (3)0.0917 (10)
H16A−0.00190.69560.52680.138*
H16B0.19390.72460.54700.138*
H16C0.10780.66250.63500.138*
U11U22U33U12U13U23
Cl10.1025 (6)0.0832 (5)0.1078 (6)−0.0071 (4)−0.0163 (5)0.0446 (5)
O10.0912 (14)0.0996 (15)0.0667 (12)−0.0161 (12)0.0144 (11)0.0145 (11)
O20.0987 (15)0.0962 (14)0.0634 (11)0.0152 (12)0.0085 (11)−0.0211 (11)
O30.0674 (12)0.0639 (11)0.0768 (12)0.0064 (9)−0.0015 (9)−0.0028 (9)
N10.0626 (12)0.0543 (12)0.0542 (12)−0.0024 (9)0.0045 (10)−0.0012 (9)
C10.0826 (19)0.0469 (12)0.0538 (15)0.0005 (13)0.0015 (13)−0.0052 (11)
C20.0622 (15)0.0478 (13)0.0528 (14)−0.0045 (11)0.0026 (13)0.0042 (10)
C30.0680 (16)0.0484 (13)0.0555 (15)−0.0070 (12)−0.0092 (13)−0.0014 (11)
C40.0656 (16)0.0463 (13)0.0516 (14)−0.0069 (12)0.0003 (12)−0.0040 (10)
C50.0626 (15)0.0420 (11)0.0536 (13)−0.0073 (11)−0.0012 (12)0.0035 (10)
C60.0775 (18)0.0508 (13)0.0515 (14)−0.0073 (13)−0.0070 (12)−0.0052 (11)
C70.0719 (17)0.0473 (13)0.0775 (18)−0.0101 (12)−0.0107 (14)−0.0034 (12)
C80.0628 (16)0.0724 (16)0.0504 (14)0.0086 (13)−0.0054 (12)−0.0097 (13)
C90.0605 (16)0.0754 (16)0.0513 (14)−0.0047 (13)0.0019 (13)0.0033 (14)
C100.0485 (12)0.0515 (12)0.0468 (12)0.0001 (11)−0.0045 (10)−0.0013 (11)
C110.0510 (12)0.0551 (13)0.0482 (13)0.0033 (10)−0.0085 (11)−0.0051 (11)
C120.0649 (15)0.0583 (14)0.0522 (14)−0.0016 (12)0.0009 (12)−0.0101 (11)
C130.0601 (15)0.0795 (17)0.0460 (13)−0.0036 (13)−0.0033 (12)0.0020 (13)
C140.0565 (15)0.0637 (15)0.0630 (16)−0.0028 (12)−0.0136 (13)0.0138 (13)
C150.0588 (15)0.0506 (13)0.0669 (16)0.0049 (11)−0.0166 (13)−0.0035 (12)
C160.087 (2)0.088 (2)0.100 (2)0.0183 (17)0.0142 (18)−0.0122 (18)
Cl1—C141.729 (2)C6—H6A0.9300
O1—C91.213 (3)C7—H7A0.9700
O2—C81.208 (3)C7—H7B0.9700
O3—C21.364 (3)C8—C111.461 (3)
O3—C161.415 (3)C8—C91.550 (4)
N1—C91.354 (3)C10—C121.367 (3)
N1—C101.412 (3)C10—C111.389 (3)
N1—C71.460 (3)C11—C151.378 (3)
C1—C21.369 (3)C12—C131.380 (3)
C1—C61.378 (3)C12—H12A0.9300
C1—H1A0.9300C13—C141.391 (3)
C2—C31.390 (3)C13—H13A0.9300
C3—C41.379 (3)C14—C151.367 (4)
C3—H3A0.9300C15—H15A0.9300
C4—C51.384 (3)C16—H16A0.9600
C4—H4A0.9300C16—H16B0.9600
C5—C61.386 (3)C16—H16C0.9600
C5—C71.504 (3)
C2—O3—C16118.5 (2)O2—C8—C9124.1 (2)
C9—N1—C10110.92 (18)C11—C8—C9105.0 (2)
C9—N1—C7124.5 (2)O1—C9—N1127.4 (2)
C10—N1—C7124.6 (2)O1—C9—C8126.6 (2)
C2—C1—C6120.1 (2)N1—C9—C8106.1 (2)
C2—C1—H1A120.0C12—C10—C11121.0 (2)
C6—C1—H1A120.0C12—C10—N1128.1 (2)
O3—C2—C1125.7 (2)C11—C10—N1110.85 (19)
O3—C2—C3114.8 (2)C15—C11—C10121.0 (2)
C1—C2—C3119.6 (2)C15—C11—C8131.8 (2)
C4—C3—C2119.9 (2)C10—C11—C8107.1 (2)
C4—C3—H3A120.0C10—C12—C13118.1 (2)
C2—C3—H3A120.0C10—C12—H12A121.0
C3—C4—C5121.0 (2)C13—C12—H12A121.0
C3—C4—H4A119.5C12—C13—C14120.7 (2)
C5—C4—H4A119.5C12—C13—H13A119.6
C4—C5—C6118.1 (2)C14—C13—H13A119.6
C4—C5—C7121.9 (2)C15—C14—C13121.2 (2)
C6—C5—C7119.9 (2)C15—C14—Cl1119.8 (2)
C1—C6—C5121.3 (2)C13—C14—Cl1119.0 (2)
C1—C6—H6A119.3C14—C15—C11117.9 (2)
C5—C6—H6A119.3C14—C15—H15A121.0
N1—C7—C5113.85 (19)C11—C15—H15A121.0
N1—C7—H7A108.8O3—C16—H16A109.5
C5—C7—H7A108.8O3—C16—H16B109.5
N1—C7—H7B108.8H16A—C16—H16B109.5
C5—C7—H7B108.8O3—C16—H16C109.5
H7A—C7—H7B107.7H16A—C16—H16C109.5
O2—C8—C11130.8 (2)H16B—C16—H16C109.5
C16—O3—C2—C1−1.2 (3)C11—C8—C9—N10.1 (3)
C16—O3—C2—C3179.4 (2)C9—N1—C10—C12178.7 (2)
C6—C1—C2—O3−178.0 (2)C7—N1—C10—C12−1.2 (4)
C6—C1—C2—C31.4 (3)C9—N1—C10—C110.7 (3)
O3—C2—C3—C4177.2 (2)C7—N1—C10—C11−179.2 (2)
C1—C2—C3—C4−2.2 (3)C12—C10—C11—C15−0.4 (3)
C2—C3—C4—C51.3 (3)N1—C10—C11—C15177.8 (2)
C3—C4—C5—C60.5 (3)C12—C10—C11—C8−178.8 (2)
C3—C4—C5—C7−175.1 (2)N1—C10—C11—C8−0.6 (2)
C2—C1—C6—C50.4 (3)O2—C8—C11—C150.5 (5)
C4—C5—C6—C1−1.3 (3)C9—C8—C11—C15−177.9 (2)
C7—C5—C6—C1174.4 (2)O2—C8—C11—C10178.7 (3)
C9—N1—C7—C5107.0 (3)C9—C8—C11—C100.3 (2)
C10—N1—C7—C5−73.1 (3)C11—C10—C12—C130.1 (3)
C4—C5—C7—N1−33.9 (3)N1—C10—C12—C13−177.7 (2)
C6—C5—C7—N1150.6 (2)C10—C12—C13—C140.4 (3)
C10—N1—C9—O1179.9 (2)C12—C13—C14—C15−0.6 (4)
C7—N1—C9—O1−0.1 (4)C12—C13—C14—Cl1179.08 (19)
C10—N1—C9—C8−0.5 (3)C13—C14—C15—C110.4 (3)
C7—N1—C9—C8179.5 (2)Cl1—C14—C15—C11−179.33 (18)
O2—C8—C9—O11.2 (4)C10—C11—C15—C140.1 (3)
C11—C8—C9—O1179.7 (2)C8—C11—C15—C14178.0 (2)
O2—C8—C9—N1−178.4 (2)
D—H···AD—HH···AD···AD—H···A
C16—H16C···O1i0.962.633.537 (4)159
C1—H1A···O2ii0.932.583.391 (3)146
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C16—H16C⋯O1i0.962.633.537 (4)159
C1—H1A⋯O2ii0.932.583.391 (3)146

Symmetry codes: (i) ; (ii) .

  6 in total

1.  An investigation into the cytotoxicity and mode of action of some novel N-alkyl-substituted isatins.

Authors:  Kara L Vine; Julie M Locke; Marie Ranson; Stephen G Pyne; John B Bremner
Journal:  J Med Chem       Date:  2007-09-21       Impact factor: 7.446

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Synthesis and in vitro evaluation of N-alkyl-3-hydroxy-3-(2-imino-3-methyl-5-oxoimidazolidin-4-yl)indolin-2-one analogs as potential anticancer agents.

Authors:  Narsimha Reddy Penthala; Thirupathi Reddy Yerramreddy; Nikhil Reddy Madadi; Peter A Crooks
Journal:  Bioorg Med Chem Lett       Date:  2010-06-10       Impact factor: 2.823

4.  Asymmetric aldol reaction of acetaldehyde and isatin derivatives for the total syntheses of ent-convolutamydine E and CPC-1 and a half fragment of madindoline A and B.

Authors:  Takahiko Itoh; Hayato Ishikawa; Yujiro Hayashi
Journal:  Org Lett       Date:  2009-09-03       Impact factor: 6.005

5.  N-phenethyl and N-naphthylmethyl isatins and analogues as in vitro cytotoxic agents.

Authors:  Lidia Matesic; Julie M Locke; John B Bremner; Stephen G Pyne; Danielle Skropeta; Marie Ranson; Kara L Vine
Journal:  Bioorg Med Chem       Date:  2008-01-07       Impact factor: 3.641

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total
  2 in total

1.  5-Fluoro-1-(4-meth-oxy-benz-yl)indoline-2,3-dione.

Authors:  Weiyao Wu; Huihui Lin; Chong-Qing Wan; Sheng-Li Cao
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-06-30

2.  6-Chloro-1-methyl-indoline-2,3-dione.

Authors:  Hua Quan Liu; Wei Tang; De Cai Wang; Ping Kai Ou-Yang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-12-03
  2 in total

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