Literature DB >> 21837201

5-Fluoro-1-(4-meth-oxy-benz-yl)indoline-2,3-dione.

Weiyao Wu1, Huihui Lin, Chong-Qing Wan, Sheng-Li Cao.   

Abstract

In the title compound, C(16)H(12)FNO(3), the dihedral angle between the benzene ring and the plane of the indole ring system is 71.60 (6)°. In the crystal, mol-ecules stack along the b axis through π-π inter-actions between the adjacent indole-2,3-dione units with a centroid-centroid distance of 3.649 (3) Å. Inter-molecular C-H⋯O=C and C-H⋯π inter-actions further stabilize the structure, forming a three-dimensional framework.

Entities:  

Year:  2011        PMID: 21837201      PMCID: PMC3151828          DOI: 10.1107/S1600536811023488

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the use of 5-fluoro­indoline-2,3-dione and its analogues as anti-tumour agents, see: Uddin et al. (2007 ▶); Penthala et al. (2010 ▶). For a related structure, see: Wu et al. (2011 ▶).

Experimental

Crystal data

C16H12FNO3 M = 285.27 Orthorhombic, a = 17.779 (4) Å b = 7.1575 (14) Å c = 21.306 (4) Å V = 2711.3 (9) Å3 Z = 8 Mo Kα radiation μ = 0.11 mm−1 T = 296 K 0.40 × 0.30 × 0.20 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2007 ▶) T min = 0.641, T max = 0.746 25325 measured reflections 3202 independent reflections 1604 reflections with I > 2σ(I) R int = 0.100

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.136 S = 1.01 3202 reflections 190 parameters H-atom parameters constrained Δρmax = 0.16 e Å−3 Δρmin = −0.15 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: APEX2 and SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811023488/sj5156sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811023488/sj5156Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811023488/sj5156Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H12FNO3Z = 8
Mr = 285.27F(000) = 1184
Orthorhombic, PbcaDx = 1.398 Mg m3
Hall symbol: -P 2ac 2abMo Kα radiation, λ = 0.71073 Å
a = 17.779 (4) ŵ = 0.11 mm1
b = 7.1575 (14) ÅT = 296 K
c = 21.306 (4) ÅBlock, yellow
V = 2711.3 (9) Å30.40 × 0.30 × 0.20 mm
Bruker APEXII CCD area-detector diffractometer3202 independent reflections
Radiation source: fine-focus sealed tube1604 reflections with I > 2σ(I)
graphiteRint = 0.100
ω scansθmax = 27.9°, θmin = 6.4°
Absorption correction: multi-scan (SADABS; Bruker, 2007)h = −23→23
Tmin = 0.641, Tmax = 0.746k = −9→9
25325 measured reflectionsl = −28→27
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.049Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.136H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.0557P)2 + 0.1083P] where P = (Fo2 + 2Fc2)/3
3202 reflections(Δ/σ)max < 0.001
190 parametersΔρmax = 0.16 e Å3
0 restraintsΔρmin = −0.15 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
F10.08487 (7)0.2819 (2)0.39404 (6)0.0874 (4)
O10.38817 (8)0.2815 (2)0.34962 (7)0.0788 (5)
O20.47658 (8)0.2065 (2)0.46416 (7)0.0738 (5)
O30.36524 (10)0.7189 (2)0.74362 (7)0.0833 (5)
N10.35821 (8)0.1683 (2)0.50669 (7)0.0508 (4)
C10.42398 (10)0.5766 (3)0.65265 (9)0.0569 (5)
H1A0.45790.67450.64820.068*
C20.37197 (11)0.5783 (3)0.70053 (9)0.0579 (5)
C30.32168 (12)0.4322 (3)0.70640 (9)0.0668 (6)
H3A0.28660.43250.73880.080*
C40.32346 (12)0.2861 (3)0.66446 (10)0.0630 (6)
H4A0.28900.18920.66870.076*
C50.37553 (11)0.2802 (3)0.61599 (8)0.0502 (5)
C60.42526 (10)0.4275 (3)0.61115 (9)0.0542 (5)
H6A0.46070.42680.57910.065*
C70.37914 (11)0.1181 (3)0.57101 (9)0.0576 (5)
H7A0.42990.06830.57090.069*
H7B0.34580.02020.58570.069*
C80.36179 (12)0.2478 (3)0.40047 (10)0.0543 (5)
C90.40834 (11)0.2057 (3)0.45996 (9)0.0545 (5)
C100.28347 (10)0.1884 (2)0.48441 (9)0.0451 (4)
C110.28318 (10)0.2373 (2)0.42095 (9)0.0472 (5)
C120.21641 (11)0.2671 (3)0.38876 (9)0.0552 (5)
H12A0.21570.29870.34640.066*
C130.15144 (11)0.2476 (3)0.42286 (10)0.0570 (5)
C140.15047 (11)0.1975 (3)0.48525 (10)0.0569 (5)
H14A0.10480.18400.50600.068*
C150.21751 (10)0.1671 (3)0.51749 (9)0.0522 (5)
H15A0.21770.13370.55970.063*
C160.42269 (18)0.8594 (4)0.74439 (13)0.0992 (9)
H16A0.41160.94950.77640.149*
H16B0.42450.92050.70430.149*
H16C0.47040.80210.75290.149*
U11U22U33U12U13U23
F10.0514 (7)0.1155 (11)0.0953 (10)0.0063 (7)−0.0130 (6)0.0019 (8)
O10.0704 (10)0.1040 (13)0.0619 (10)−0.0115 (8)0.0144 (8)0.0097 (8)
O20.0460 (9)0.0904 (11)0.0851 (11)−0.0052 (7)0.0015 (7)0.0017 (8)
O30.0923 (12)0.0894 (12)0.0682 (10)−0.0015 (9)0.0081 (8)−0.0262 (9)
N10.0480 (9)0.0532 (9)0.0510 (9)−0.0020 (7)−0.0001 (7)−0.0018 (7)
C10.0512 (11)0.0608 (13)0.0587 (12)−0.0066 (9)−0.0012 (9)−0.0035 (10)
C20.0604 (12)0.0652 (13)0.0480 (11)0.0062 (11)−0.0031 (10)−0.0060 (10)
C30.0643 (13)0.0856 (17)0.0504 (12)−0.0053 (12)0.0107 (10)−0.0008 (11)
C40.0614 (13)0.0679 (14)0.0597 (13)−0.0122 (10)0.0016 (10)0.0056 (11)
C50.0499 (11)0.0530 (12)0.0479 (11)0.0043 (9)−0.0050 (9)0.0054 (9)
C60.0448 (11)0.0656 (13)0.0520 (11)0.0007 (10)0.0024 (8)−0.0009 (10)
C70.0609 (12)0.0558 (12)0.0560 (12)0.0012 (9)−0.0057 (10)0.0028 (10)
C80.0558 (12)0.0522 (12)0.0549 (12)−0.0070 (9)0.0042 (10)0.0004 (9)
C90.0483 (12)0.0524 (12)0.0628 (13)−0.0044 (9)0.0039 (10)−0.0036 (9)
C100.0448 (10)0.0388 (10)0.0516 (11)−0.0020 (8)0.0028 (8)−0.0063 (8)
C110.0472 (11)0.0432 (10)0.0513 (11)−0.0031 (8)0.0022 (8)−0.0030 (8)
C120.0584 (13)0.0533 (12)0.0539 (12)−0.0027 (9)−0.0025 (9)0.0002 (9)
C130.0448 (11)0.0568 (12)0.0694 (14)−0.0004 (9)−0.0068 (10)−0.0036 (10)
C140.0466 (11)0.0541 (12)0.0699 (14)−0.0051 (9)0.0086 (9)−0.0061 (10)
C150.0542 (12)0.0488 (11)0.0536 (11)−0.0029 (9)0.0079 (9)−0.0027 (9)
C160.138 (3)0.0752 (17)0.0848 (18)−0.0146 (18)−0.0027 (16)−0.0240 (14)
F1—C131.356 (2)C6—H6A0.9300
O1—C81.205 (2)C7—H7A0.9700
O2—C91.217 (2)C7—H7B0.9700
O3—C21.368 (2)C8—C111.466 (3)
O3—C161.433 (3)C8—C91.544 (3)
N1—C91.363 (2)C10—C151.377 (2)
N1—C101.418 (2)C10—C111.396 (3)
N1—C71.465 (2)C11—C121.388 (3)
C1—C21.377 (3)C12—C131.372 (3)
C1—C61.386 (3)C12—H12A0.9300
C1—H1A0.9300C13—C141.377 (3)
C2—C31.382 (3)C14—C151.393 (3)
C3—C41.375 (3)C14—H14A0.9300
C3—H3A0.9300C15—H15A0.9300
C4—C51.388 (3)C16—H16A0.9600
C4—H4A0.9300C16—H16B0.9600
C5—C61.380 (3)C16—H16C0.9600
C5—C71.507 (3)
C2—O3—C16117.50 (18)O1—C8—C9124.66 (19)
C9—N1—C10110.37 (15)C11—C8—C9104.88 (16)
C9—N1—C7124.44 (16)O2—C9—N1126.83 (19)
C10—N1—C7125.18 (15)O2—C9—C8126.46 (18)
C2—C1—C6119.38 (18)N1—C9—C8106.71 (16)
C2—C1—H1A120.3C15—C10—C11121.35 (17)
C6—C1—H1A120.3C15—C10—N1127.97 (17)
O3—C2—C1124.24 (19)C11—C10—N1110.67 (15)
O3—C2—C3116.10 (18)C12—C11—C10121.35 (16)
C1—C2—C3119.66 (18)C12—C11—C8131.34 (17)
C4—C3—C2120.11 (19)C10—C11—C8107.31 (16)
C4—C3—H3A119.9C13—C12—C11116.29 (18)
C2—C3—H3A119.9C13—C12—H12A121.9
C3—C4—C5121.47 (19)C11—C12—H12A121.9
C3—C4—H4A119.3F1—C13—C12118.47 (19)
C5—C4—H4A119.3F1—C13—C14118.25 (18)
C6—C5—C4117.37 (18)C12—C13—C14123.27 (18)
C6—C5—C7120.92 (17)C13—C14—C15120.39 (18)
C4—C5—C7121.70 (18)C13—C14—H14A119.8
C5—C6—C1122.01 (17)C15—C14—H14A119.8
C5—C6—H6A119.0C10—C15—C14117.34 (18)
C1—C6—H6A119.0C10—C15—H15A121.3
N1—C7—C5113.29 (15)C14—C15—H15A121.3
N1—C7—H7A108.9O3—C16—H16A109.5
C5—C7—H7A108.9O3—C16—H16B109.5
N1—C7—H7B108.9H16A—C16—H16B109.5
C5—C7—H7B108.9O3—C16—H16C109.5
H7A—C7—H7B107.7H16A—C16—H16C109.5
O1—C8—C11130.47 (19)H16B—C16—H16C109.5
Cg1 is the centroid of the C1–C6 benzene ring.
D—H···AD—HH···AD···AD—H···A
C15—H15A···Cg1i0.933.033.812 (2)142
C14—H14A···O2ii0.932.493.345 (2)153
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C1–C6 benzene ring.

D—H⋯AD—HH⋯ADAD—H⋯A
C15—H15ACg1i0.933.033.812 (2)142
C14—H14A⋯O2ii0.932.493.345 (2)153

Symmetry codes: (i) ; (ii) .

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Authors:  Muhammed K Uddin; Serge G Reignier; Tom Coulter; Christian Montalbetti; Charlotta Grånäs; Steven Butcher; Christian Krog-Jensen; Jakob Felding
Journal:  Bioorg Med Chem Lett       Date:  2007-02-25       Impact factor: 2.823

2.  A short history of SHELX.

Authors:  George M Sheldrick
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3.  Synthesis and in vitro evaluation of N-alkyl-3-hydroxy-3-(2-imino-3-methyl-5-oxoimidazolidin-4-yl)indolin-2-one analogs as potential anticancer agents.

Authors:  Narsimha Reddy Penthala; Thirupathi Reddy Yerramreddy; Nikhil Reddy Madadi; Peter A Crooks
Journal:  Bioorg Med Chem Lett       Date:  2010-06-10       Impact factor: 2.823

4.  5-Chloro-1-(4-meth-oxy-benz-yl)indoline-2,3-dione.

Authors:  Weiyao Wu; Tingting Zheng; Shengli Cao; Zhichang Xiao
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-01-08

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
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