Literature DB >> 23125615

Di-μ-chlorido-bis-[(2-amino-4-methyl-pyridine-κN)-chloridomercury(II)].

Azadeh Tadjarodi1, Keyvan Bijanzad, Behrouz Notash.   

Abstract

In the centrosymmetric dinuclear title compound, [Hg(2)Cl(4)(C(6)H(8)N(2))(2)], the Hg(II) ion is four-coordinated by one pyridine N atom from a 2-amino-4-methyl-pyridine ligand, one terminal Cl atom and two bridging Cl atoms. A distorted tetra-hedral geometry is formed around each Hg(II) ion. The crystal packing is stabilized by intra- and inter-molecular N-H⋯Cl hydrogen bonding. There are also π-π stacking inter-actions in the structure, with centroid-to-centroid distances of 3.594 (6) Å.

Entities:  

Year:  2012        PMID: 23125615      PMCID: PMC3470171          DOI: 10.1107/S1600536812039803

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a coordination compound of 2-amino-4-methyl­pyridine, see: Arab Ahmadi et al. (2011 ▶). For proton-transfer compounds of 2-amino-4-methyl­pyridine, see: Gharbia et al. (2008 ▶); Choudhury et al. (2009 ▶); Das et al. (2010 ▶); Hemamalini & Fun (2010 ▶); Aghabozorg et al. (2011 ▶); Eshtiagh-Hosseini et al. (2010 ▶). For mixed-ligand complexes of 2-amino-4-methyl­pyridine, see: Zhang et al. (2008 ▶); Castillo et al. (2001 ▶); Yenikaya et al. (2011 ▶). For similar structures, see: Baul et al. (2004 ▶).

Experimental

Crystal data

[Hg2Cl4(C6H8N2)2] M = 759.27 Monoclinic, a = 7.1777 (14) Å b = 9.1672 (18) Å c = 14.546 (3) Å β = 101.92 (3)° V = 936.5 (3) Å3 Z = 2 Mo Kα radiation μ = 16.94 mm−1 T = 120 K 0.25 × 0.25 × 0.20 mm

Data collection

Stoe IPDS 2T diffractometer Absorption correction: numerical (shape of crystal determined optically; X-RED and X-SHAPE, Stoe & Cie, 2005 ▶) T min = 0.101, T max = 0.133 6495 measured reflections 2507 independent reflections 2019 reflections with I > 2σ(I) R int = 0.090

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.111 S = 1.00 2507 reflections 109 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 2.35 e Å−3 Δρmin = −2.80 e Å−3 Data collection: X-AREA (Stoe & Cie, 2005 ▶); cell refinement: X-AREA; data reduction: X-AREA; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812039803/bt6826sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812039803/bt6826Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H16Cl4Hg2N4F(000) = 688
Mr = 759.27Dx = 2.693 Mg m3
Monoclinic, P2/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2yacCell parameters from 2507 reflections
a = 7.1777 (14) Åθ = 2.6–29.1°
b = 9.1672 (18) ŵ = 16.94 mm1
c = 14.546 (3) ÅT = 120 K
β = 101.92 (3)°Block, colorless
V = 936.5 (3) Å30.25 × 0.25 × 0.20 mm
Z = 2
Stoe IPDS 2T diffractometer2507 independent reflections
Radiation source: fine-focus sealed tube2019 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.090
Detector resolution: 0.15 mm pixels mm-1θmax = 29.1°, θmin = 2.6°
rotation method scansh = −9→9
Absorption correction: numerical shape of crystal determined opticallyk = −12→10
Tmin = 0.101, Tmax = 0.133l = −19→19
6495 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.046Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.111H atoms treated by a mixture of independent and constrained refinement
S = 1.00w = 1/[σ2(Fo2) + (0.0604P)2] where P = (Fo2 + 2Fc2)/3
2507 reflections(Δ/σ)max < 0.001
109 parametersΔρmax = 2.35 e Å3
2 restraintsΔρmin = −2.80 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
Hg10.21238 (5)0.47797 (4)0.94011 (2)0.02164 (12)
Cl10.3952 (3)0.6882 (3)0.98493 (15)0.0237 (4)
Cl20.1382 (3)0.3856 (2)1.10331 (13)0.0205 (4)
N10.1135 (11)0.2841 (9)0.8633 (5)0.0210 (15)
N20.0000 (13)0.4145 (10)0.7272 (5)0.0278 (18)
C10.0312 (12)0.2842 (11)0.7714 (6)0.0221 (18)
C2−0.0152 (13)0.1524 (12)0.7224 (6)0.025 (2)
H2−0.07090.15410.65720.030*
C30.0199 (16)0.0208 (12)0.7685 (7)0.031 (2)
C4−0.022 (2)−0.1198 (14)0.7162 (8)0.046 (3)
H4A−0.1242−0.10480.66100.068*
H4B−0.0612−0.19310.75730.068*
H4C0.0930−0.15360.69590.068*
C50.0993 (15)0.0221 (12)0.8661 (7)0.028 (2)
H50.1206−0.06620.90090.034*
C60.1444 (14)0.1542 (11)0.9089 (6)0.0241 (18)
H60.20030.15500.97410.029*
H2A−0.080 (14)0.429 (19)0.675 (5)0.06 (4)*
H2B−0.028 (19)0.495 (7)0.753 (9)0.03 (3)*
U11U22U33U12U13U23
Hg10.02222 (18)0.0215 (2)0.01994 (17)−0.00052 (14)0.00134 (11)−0.00125 (13)
Cl10.0237 (10)0.0218 (12)0.0245 (10)−0.0020 (8)0.0025 (8)0.0015 (8)
Cl20.0194 (9)0.0248 (11)0.0177 (8)0.0030 (8)0.0047 (7)0.0008 (7)
N10.021 (4)0.020 (4)0.022 (3)−0.003 (3)0.005 (3)−0.001 (3)
N20.040 (5)0.026 (5)0.016 (3)0.010 (4)0.001 (3)−0.001 (3)
C10.010 (4)0.033 (5)0.024 (4)0.001 (3)0.005 (3)0.003 (3)
C20.020 (4)0.038 (6)0.017 (4)−0.004 (4)0.006 (3)−0.010 (4)
C30.038 (6)0.033 (6)0.026 (4)−0.015 (4)0.017 (4)−0.012 (4)
C40.073 (9)0.036 (7)0.033 (5)−0.030 (6)0.023 (6)−0.022 (5)
C50.033 (5)0.023 (5)0.031 (5)0.003 (4)0.014 (4)0.002 (4)
C60.025 (5)0.026 (5)0.019 (4)0.001 (4)0.002 (3)0.002 (3)
Hg1—N12.141 (8)C2—C31.377 (16)
Hg1—Cl12.347 (2)C2—H20.9500
Hg1—Cl22.6755 (19)C3—C51.417 (16)
Hg1—Cl2i2.763 (2)C3—C41.496 (14)
Cl2—Hg1i2.763 (2)C4—H4A0.9800
N1—C11.345 (12)C4—H4B0.9800
N1—C61.359 (13)C4—H4C0.9800
N2—C11.353 (13)C5—C61.369 (15)
N2—H2A0.87 (2)C5—H50.9500
N2—H2B0.87 (2)C6—H60.9500
C1—C21.407 (14)
N1—Hg1—Cl1158.87 (19)C3—C2—H2119.8
N1—Hg1—Cl295.45 (19)C1—C2—H2119.8
Cl1—Hg1—Cl2102.46 (7)C2—C3—C5118.4 (9)
N1—Hg1—Cl2i93.9 (2)C2—C3—C4120.6 (10)
Cl1—Hg1—Cl2i97.04 (8)C5—C3—C4120.9 (11)
Cl2—Hg1—Cl2i90.41 (7)C3—C4—H4A109.5
Hg1—Cl2—Hg1i89.59 (7)C3—C4—H4B109.5
C1—N1—C6118.7 (9)H4A—C4—H4B109.5
C1—N1—Hg1123.2 (7)C3—C4—H4C109.5
C6—N1—Hg1118.0 (6)H4A—C4—H4C109.5
C1—N2—H2A125 (10)H4B—C4—H4C109.5
C1—N2—H2B125 (9)C6—C5—C3118.1 (10)
H2A—N2—H2B94 (10)C6—C5—H5121.0
N1—C1—N2117.9 (9)C3—C5—H5121.0
N1—C1—C2120.8 (9)N1—C6—C5123.6 (9)
N2—C1—C2121.3 (8)N1—C6—H6118.2
C3—C2—C1120.3 (8)C5—C6—H6118.2
N1—Hg1—Cl2—Hg1i−94.0 (2)C6—N1—C1—C2−2.5 (12)
Cl1—Hg1—Cl2—Hg1i97.30 (8)Hg1—N1—C1—C2174.1 (6)
Cl2i—Hg1—Cl2—Hg1i0.0N1—C1—C2—C31.2 (12)
Cl1—Hg1—N1—C1−64.4 (10)N2—C1—C2—C3179.2 (9)
Cl2—Hg1—N1—C1147.6 (6)C1—C2—C3—C51.4 (14)
Cl2i—Hg1—N1—C156.8 (6)C1—C2—C3—C4−177.6 (9)
Cl1—Hg1—N1—C6112.2 (7)C2—C3—C5—C6−2.6 (15)
Cl2—Hg1—N1—C6−35.8 (6)C4—C3—C5—C6176.3 (9)
Cl2i—Hg1—N1—C6−126.6 (6)C1—N1—C6—C51.2 (13)
C6—N1—C1—N2179.4 (8)Hg1—N1—C6—C5−175.6 (7)
Hg1—N1—C1—N2−4.0 (11)C3—C5—C6—N11.4 (15)
D—H···AD—HH···AD···AD—H···A
N2—H2B···Cl2i0.87 (2)2.62 (7)3.380 (8)146 (11)
N2—H2A···Cl2ii0.87 (2)2.68 (11)3.379 (9)139 (13)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H2B⋯Cl2i 0.87 (2)2.62 (7)3.380 (8)146 (11)
N2—H2A⋯Cl2ii 0.87 (2)2.68 (11)3.379 (9)139 (13)

Symmetry codes: (i) ; (ii) .

  5 in total

1.  Supramolecular assembly of Mg(II) complexes directed by associative lone pair-pi/pi-pi/pi-anion-pi/pi-lone pair interactions.

Authors:  Amrita Das; Somnath Ray Choudhury; Biswajit Dey; Sampath Kumar Yalamanchili; Madeleine Helliwell; Patrick Gamez; Subrata Mukhopadhyay; Carolina Estarellas; Antonio Frontera
Journal:  J Phys Chem B       Date:  2010-04-22       Impact factor: 2.991

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Robust recognition of malonate and 2-amino-4-picolinium in conjunction with M(II) as a triad (M = Ni/Co/Mn): role of this highly stable hydrogen-bonded motif in driving supramolecular self-assembly.

Authors:  Somnath Ray Choudhury; Biswajit Dey; Suranjana Das; Arturo Robertazzi; Atish Dipankar Jana; Chih-Yuan Chen; Hon Man Lee; Patrick Gamez; Subrata Mukhopadhyay
Journal:  Dalton Trans       Date:  2009-07-20       Impact factor: 4.390

4.  2-Amino-4-methyl-pyridinium 2-hy-droxy-benzoate.

Authors:  Madhukar Hemamalini; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-31

5.  2-Amino-4-methyl-pyridinium 6-carb-oxy-pyridine-2-carboxyl-ate methanol monosolvate.

Authors:  Hossein Aghabozorg; Azadeh Mofidi Rouchi; Masoud Mirzaei; Behrouz Notash
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-12-08
  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.