Literature DB >> 21497553

The emerging world of small silencing RNAs in protozoan parasites.

Vanessa D Atayde1, Christian Tschudi, Elisabetta Ullu.   

Abstract

A new RNA world has emerged in the past 10 years with the discovery of a plethora of 20- to 30-nucleotide long small RNAs that are involved in various gene silencing mechanisms. These small RNAs have considerably changed our view of the regulation of gene expression in eukaryotic organisms, with a major shift towards epigenetic and post-transcriptional mechanisms. In this article, we focus on the striking diversity of small silencing RNAs that have been identified in several protozoan parasites and their potential biological role.
Copyright © 2011 Elsevier Ltd. All rights reserved.

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Year:  2011        PMID: 21497553      PMCID: PMC3124596          DOI: 10.1016/j.pt.2011.03.002

Source DB:  PubMed          Journal:  Trends Parasitol        ISSN: 1471-4922


  59 in total

1.  Argonaute protein in the early divergent eukaryote Trypanosoma brucei: control of small interfering RNA accumulation and retroposon transcript abundance.

Authors:  Huafang Shi; Appolinaire Djikeng; Christian Tschudi; Elisabetta Ullu
Journal:  Mol Cell Biol       Date:  2004-01       Impact factor: 4.272

2.  Structural and biochemical insights into the dicing mechanism of mouse Dicer: a conserved lysine is critical for dsRNA cleavage.

Authors:  Zhihua Du; John K Lee; Richard Tjhen; Robert M Stroud; Thomas L James
Journal:  Proc Natl Acad Sci U S A       Date:  2008-02-11       Impact factor: 11.205

3.  Structural basis for double-stranded RNA processing by Dicer.

Authors:  Ian J Macrae; Kaihong Zhou; Fei Li; Adrian Repic; Angela N Brooks; W Zacheus Cande; Paul D Adams; Jennifer A Doudna
Journal:  Science       Date:  2006-01-13       Impact factor: 47.728

4.  Unique organisation of tRNA genes in Entamoeba histolytica.

Authors:  C Graham Clark; Ibne Karim M Ali; Mehreen Zaki; Brendan J Loftus; Neil Hall
Journal:  Mol Biochem Parasitol       Date:  2005-10-28       Impact factor: 1.759

5.  Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans.

Authors:  A Fire; S Xu; M K Montgomery; S A Kostas; S E Driver; C C Mello
Journal:  Nature       Date:  1998-02-19       Impact factor: 49.962

Review 6.  RNA interference in Entamoeba histolytica: implications for parasite biology and gene silencing.

Authors:  Hanbang Zhang; Justine M Pompey; Upinder Singh
Journal:  Future Microbiol       Date:  2011-01       Impact factor: 3.165

7.  Mammalian microRNAs predominantly act to decrease target mRNA levels.

Authors:  Huili Guo; Nicholas T Ingolia; Jonathan S Weissman; David P Bartel
Journal:  Nature       Date:  2010-08-12       Impact factor: 49.962

8.  Improvements in transfection efficiency and tests of RNA interference (RNAi) approaches in the protozoan parasite Leishmania.

Authors:  Kelly A Robinson; Stephen M Beverley
Journal:  Mol Biochem Parasitol       Date:  2003-05       Impact factor: 1.759

Review 9.  Small silencing RNAs: an expanding universe.

Authors:  Megha Ghildiyal; Phillip D Zamore
Journal:  Nat Rev Genet       Date:  2009-02       Impact factor: 53.242

10.  Identification of differentially expressed genes in virulent and nonvirulent Entamoeba species: potential implications for amebic pathogenesis.

Authors:  Ryan C MacFarlane; Upinder Singh
Journal:  Infect Immun       Date:  2006-01       Impact factor: 3.441

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  12 in total

1.  Nucleus-localized antisense small RNAs with 5'-polyphosphate termini regulate long term transcriptional gene silencing in Entamoeba histolytica G3 strain.

Authors:  Hanbang Zhang; Hussein Alramini; Vy Tran; Upinder Singh
Journal:  J Biol Chem       Date:  2011-11-02       Impact factor: 5.157

Review 2.  RNA interference in protozoan parasites: achievements and challenges.

Authors:  Nikolay G Kolev; Christian Tschudi; Elisabetta Ullu
Journal:  Eukaryot Cell       Date:  2011-07-15

3.  Evolutionary comparisons of miRNA regulation system in six model organisms.

Authors:  Xiaofan Mao; Li Li; Yicheng Cao
Journal:  Genetica       Date:  2014-02-11       Impact factor: 1.082

4.  A single-cloning-step procedure for the generation of RNAi plasmids producing long stem-loop RNA.

Authors:  Vanessa D Atayde; Elisabetta Ullu; Nikolay G Kolev
Journal:  Mol Biochem Parasitol       Date:  2012-04-20       Impact factor: 1.759

Review 5.  Chromatin modifications, epigenetics, and how protozoan parasites regulate their lives.

Authors:  Matthew M Croken; Sheila C Nardelli; Kami Kim
Journal:  Trends Parasitol       Date:  2012-04-03

6.  Comparative genomics reveals two novel RNAi factors in Trypanosoma brucei and provides insight into the core machinery.

Authors:  Rebecca L Barnes; Huafang Shi; Nikolay G Kolev; Christian Tschudi; Elisabetta Ullu
Journal:  PLoS Pathog       Date:  2012-05-24       Impact factor: 6.823

7.  Integrating microRNA and mRNA expression profiling in Symbiodinium microadriaticum, a dinoflagellate symbiont of reef-building corals.

Authors:  Sebastian Baumgarten; Till Bayer; Manuel Aranda; Yi Jin Liew; Adrian Carr; Gos Micklem; Christian R Voolstra
Journal:  BMC Genomics       Date:  2013-10-12       Impact factor: 3.969

8.  Comparative transcriptome analysis of small noncoding RNAs in different stages of Trypanosoma brucei.

Authors:  Ling-Ling Zheng; Yan-Zi Wen; Jian-Hua Yang; Jian-You Liao; Peng Shao; Hui Xu; Hui Zhou; Jun-Zhi Wen; Zhao-Rong Lun; Francisco J Ayala; Liang-Hu Qu
Journal:  RNA       Date:  2013-05-23       Impact factor: 4.942

9.  Loss and retention of RNA interference in fungi and parasites.

Authors:  Francisco E Nicolás; Santiago Torres-Martínez; Rosa M Ruiz-Vázquez
Journal:  PLoS Pathog       Date:  2013-01-24       Impact factor: 6.823

10.  Predicting the proteins of Angomonas deanei, Strigomonas culicis and their respective endosymbionts reveals new aspects of the trypanosomatidae family.

Authors:  Maria Cristina Machado Motta; Allan Cezar de Azevedo Martins; Silvana Sant'Anna de Souza; Carolina Moura Costa Catta-Preta; Rosane Silva; Cecilia Coimbra Klein; Luiz Gonzaga Paula de Almeida; Oberdan de Lima Cunha; Luciane Prioli Ciapina; Marcelo Brocchi; Ana Cristina Colabardini; Bruna de Araujo Lima; Carlos Renato Machado; Célia Maria de Almeida Soares; Christian Macagnan Probst; Claudia Beatriz Afonso de Menezes; Claudia Elizabeth Thompson; Daniella Castanheira Bartholomeu; Daniela Fiori Gradia; Daniela Parada Pavoni; Edmundo C Grisard; Fabiana Fantinatti-Garboggini; Fabricio Klerynton Marchini; Gabriela Flávia Rodrigues-Luiz; Glauber Wagner; Gustavo Henrique Goldman; Juliana Lopes Rangel Fietto; Maria Carolina Elias; Maria Helena S Goldman; Marie-France Sagot; Maristela Pereira; Patrícia H Stoco; Rondon Pessoa de Mendonça-Neto; Santuza Maria Ribeiro Teixeira; Talles Eduardo Ferreira Maciel; Tiago Antônio de Oliveira Mendes; Turán P Ürményi; Wanderley de Souza; Sergio Schenkman; Ana Tereza Ribeiro de Vasconcelos
Journal:  PLoS One       Date:  2013-04-03       Impact factor: 3.240

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