Literature DB >> 22480826

Chromatin modifications, epigenetics, and how protozoan parasites regulate their lives.

Matthew M Croken1, Sheila C Nardelli, Kami Kim.   

Abstract

Chromatin structure plays a vital role in epigenetic regulation of protozoan parasite gene expression. Epigenetic gene regulation impacts upon parasite virulence, differentiation and cell-cycle control. Recent work in many laboratories has elucidated the functions of proteins that regulate parasite gene expression by chemical modification of constituent nucleosomes. A major focus of investigation has been the characterization of post-translational modifications (PTMs) of histones and the identification of the enzymes responsible. Despite conserved features and specificity common to all eukaryotes, parasite enzymes involved in chromatin modification have unique functions that regulate unique aspects of parasite biology.
Copyright © 2012 Elsevier Ltd. All rights reserved.

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Year:  2012        PMID: 22480826      PMCID: PMC3340475          DOI: 10.1016/j.pt.2012.02.009

Source DB:  PubMed          Journal:  Trends Parasitol        ISSN: 1471-4922


  94 in total

Review 1.  Chromatin-mediated epigenetic regulation in the malaria parasite Plasmodium falciparum.

Authors:  Liwang Cui; Jun Miao
Journal:  Eukaryot Cell       Date:  2010-05-07

Review 2.  A decade of epigenetic research in Toxoplasma gondii.

Authors:  Stacy E Dixon; Krista L Stilger; Eliana V Elias; Arunasalam Naguleswaran; William J Sullivan
Journal:  Mol Biochem Parasitol       Date:  2010-05-12       Impact factor: 1.759

Review 3.  RNA interference in protozoan parasites: achievements and challenges.

Authors:  Nikolay G Kolev; Christian Tschudi; Elisabetta Ullu
Journal:  Eukaryot Cell       Date:  2011-07-15

4.  Epigenetic regulation of polymerase II transcription initiation in Trypanosoma cruzi: modulation of nucleosome abundance, histone modification, and polymerase occupancy by O-linked thymine DNA glucosylation.

Authors:  Dilrukshi Ekanayake; Robert Sabatini
Journal:  Eukaryot Cell       Date:  2011-09-16

5.  Identification of 67 histone marks and histone lysine crotonylation as a new type of histone modification.

Authors:  Minjia Tan; Hao Luo; Sangkyu Lee; Fulai Jin; Jeong Soo Yang; Emilie Montellier; Thierry Buchou; Zhongyi Cheng; Sophie Rousseaux; Nisha Rajagopal; Zhike Lu; Zhen Ye; Qin Zhu; Joanna Wysocka; Yang Ye; Saadi Khochbin; Bing Ren; Yingming Zhao
Journal:  Cell       Date:  2011-09-16       Impact factor: 41.582

6.  A critical role of perinuclear filamentous actin in spatial repositioning and mutually exclusive expression of virulence genes in malaria parasites.

Authors:  Qingfeng Zhang; Yufu Huang; Yilong Zhang; Xiaonan Fang; Aurelie Claes; Magalie Duchateau; Abdelkader Namane; Jose-Juan Lopez-Rubio; Weiqing Pan; Artur Scherf
Journal:  Cell Host Microbe       Date:  2011-11-17       Impact factor: 21.023

7.  Two thymidine hydroxylases differentially regulate the formation of glucosylated DNA at regions flanking polymerase II polycistronic transcription units throughout the genome of Trypanosoma brucei.

Authors:  Laura J Cliffe; T Nicolai Siegel; Marion Marshall; George A M Cross; Robert Sabatini
Journal:  Nucleic Acids Res       Date:  2010-03-09       Impact factor: 16.971

8.  A complex small RNA repertoire is generated by a plant/fungal-like machinery and effected by a metazoan-like Argonaute in the single-cell human parasite Toxoplasma gondii.

Authors:  Laurence Braun; Dominique Cannella; Philippe Ortet; Mohamed Barakat; Céline F Sautel; Sylvie Kieffer; Jérôme Garin; Olivier Bastien; Olivier Voinnet; Mohamed-Ali Hakimi
Journal:  PLoS Pathog       Date:  2010-05-27       Impact factor: 6.823

9.  Genome-wide analysis of mRNA abundance in two life-cycle stages of Trypanosoma brucei and identification of splicing and polyadenylation sites.

Authors:  Tim Nicolai Siegel; Doeke R Hekstra; Xuning Wang; Scott Dewell; George A M Cross
Journal:  Nucleic Acids Res       Date:  2010-04-12       Impact factor: 16.971

10.  The motility of a human parasite, Toxoplasma gondii, is regulated by a novel lysine methyltransferase.

Authors:  Aoife T Heaslip; Manami Nishi; Barry Stein; Ke Hu
Journal:  PLoS Pathog       Date:  2011-09-01       Impact factor: 6.823

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  27 in total

Review 1.  Toxoplasma gondii Hsp90: potential roles in essential cellular processes of the parasite.

Authors:  Sergio O Angel; Maria J Figueras; Maria L Alomar; Pablo C Echeverria; Bin Deng
Journal:  Parasitology       Date:  2014-02-21       Impact factor: 3.234

Review 2.  Pathogens hijack the epigenome: a new twist on host-pathogen interactions.

Authors:  Natalie C Silmon de Monerri; Kami Kim
Journal:  Am J Pathol       Date:  2014-02-11       Impact factor: 4.307

3.  Phylogenomics of the Epigenetic Toolkit Reveals Punctate Retention of Genes across Eukaryotes.

Authors:  Agnes K M Weiner; Mario A Cerón-Romero; Ying Yan; Laura A Katz
Journal:  Genome Biol Evol       Date:  2020-12-06       Impact factor: 3.416

Review 4.  An epigenetic toolkit allows for diverse genome architectures in eukaryotes.

Authors:  Xyrus X Maurer-Alcalá; Laura A Katz
Journal:  Curr Opin Genet Dev       Date:  2015-11-30       Impact factor: 5.578

5.  toxoMine: an integrated omics data warehouse for Toxoplasma gondii systems biology research.

Authors:  David B Rhee; Matthew McKnight Croken; Kevin R Shieh; Julie Sullivan; Gos Micklem; Kami Kim; Aaron Golden
Journal:  Database (Oxford)       Date:  2015-06-30       Impact factor: 3.451

Review 6.  Trichinella spiralis, potential model nematode for epigenetics and its implication in metazoan parasitism.

Authors:  Fei Gao; Rui Wang; Mingyuan Liu
Journal:  Front Physiol       Date:  2014-01-10       Impact factor: 4.566

Review 7.  Peculiarities of Plasmodium falciparum Gene Regulation and Chromatin Structure.

Authors:  Maria Theresia Watzlowik; Sujaan Das; Markus Meissner; Gernot Längst
Journal:  Int J Mol Sci       Date:  2021-05-13       Impact factor: 5.923

Review 8.  Epigenetics of host-pathogen interactions: the road ahead and the road behind.

Authors:  Elena Gómez-Díaz; Mireia Jordà; Miguel Angel Peinado; Ana Rivero
Journal:  PLoS Pathog       Date:  2012-11-29       Impact factor: 6.823

9.  A comprehensive epigenome map of Plasmodium falciparum reveals unique mechanisms of transcriptional regulation and identifies H3K36me2 as a global mark of gene suppression.

Authors:  Saurabh J Pradhan; Bhagyashree Joshi; Krishanpal Karmodiya; Rahul Jangid; Puli Chandramouli Reddy; Sanjeev Galande
Journal:  Epigenetics Chromatin       Date:  2015-09-17       Impact factor: 4.954

Review 10.  Histone acetylation in fungal pathogens of plants.

Authors:  Junhyun Jeon; Seomun Kwon; Yong-Hwan Lee
Journal:  Plant Pathol J       Date:  2014-03       Impact factor: 1.795

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