Literature DB >> 21481766

Membrane protein structure determination using paramagnetic tags.

Soumya Ganguly1, Brian E Weiner, Jens Meiler.   

Abstract

The combination of paramagnetic tagging strategies with NMR or EPR spectroscopic techniques can revolutionize de novo structure determination of helical membrane proteins. Leveraging the full potential of this approach requires optimal labeling strategies and prediction of membrane protein topology from sparse and low-resolution distance restraints, as addressed by Chen et al. (2011).
Copyright © 2011 Elsevier Ltd. All rights reserved.

Entities:  

Year:  2011        PMID： 21481766      PMCID： PMC3754786          DOI： 10.1016/j.str.2011.03.008

Source DB:  PubMed          Journal:  Structure        ISSN： 0969-2126            Impact factor:   5.006


  12 in total

1.  Protein structure determination using long-distance constraints from double-quantum coherence ESR: study of T4 lysozyme.

Authors:  Petr P Borbat; Hassane S McHaourab; Jack H Freed
Journal:  J Am Chem Soc       Date:  2002-05-15       Impact factor: 15.419

2.  Crystal structure of the DsbB-DsbA complex reveals a mechanism of disulfide bond generation.

Authors:  Kenji Inaba; Satoshi Murakami; Mamoru Suzuki; Atsushi Nakagawa; Eiki Yamashita; Kengo Okada; Koreaki Ito
Journal:  Cell       Date:  2006-11-17       Impact factor: 41.582

3.  NMR experiments on aligned samples of membrane proteins.

Authors:  A A De Angelis; D H Jones; C V Grant; S H Park; M F Mesleh; S J Opella
Journal:  Methods Enzymol       Date:  2005       Impact factor: 1.600

Review 4.  Solution NMR of membrane proteins: practice and challenges.

Authors:  Charles R Sanders; Frank Sönnichsen
Journal:  Magn Reson Chem       Date:  2006-07       Impact factor: 2.447

5.  De novo high-resolution protein structure determination from sparse spin-labeling EPR data.

Authors:  Nathan Alexander; Marco Bortolus; Ahmad Al-Mestarihi; Hassane Mchaourab; Jens Meiler
Journal:  Structure       Date:  2008-02       Impact factor: 5.006

6.  EM-fold: De novo folding of alpha-helical proteins guided by intermediate-resolution electron microscopy density maps.

Authors:  Steffen Lindert; René Staritzbichler; Nils Wötzel; Mert Karakaş; Phoebe L Stewart; Jens Meiler
Journal:  Structure       Date:  2009-07-15       Impact factor: 5.006

7.  NMR solution structure of the integral membrane enzyme DsbB: functional insights into DsbB-catalyzed disulfide bond formation.

Authors:  Yunpeng Zhou; Tomasz Cierpicki; Ricardo H Flores Jimenez; Stephen M Lukasik; Jeffrey F Ellena; David S Cafiso; Hiroshi Kadokura; Jon Beckwith; John H Bushweller
Journal:  Mol Cell       Date:  2008-09-26       Impact factor: 17.970

8.  RosettaEPR: an integrated tool for protein structure determination from sparse EPR data.

Authors:  Stephanie J Hirst; Nathan Alexander; Hassane S McHaourab; Jens Meiler
Journal:  J Struct Biol       Date:  2010-10-26       Impact factor: 2.867

9.  Solution nuclear magnetic resonance structure of membrane-integral diacylglycerol kinase.

Authors:  Wade D Van Horn; Hak-Jun Kim; Charles D Ellis; Arina Hadziselimovic; Endah S Sulistijo; Murthy D Karra; Changlin Tian; Frank D Sönnichsen; Charles R Sanders
Journal:  Science       Date:  2009-06-26       Impact factor: 47.728

10.  Prediction of membrane protein structures with complex topologies using limited constraints.

Authors:  P Barth; B Wallner; D Baker
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-03       Impact factor: 11.205
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  6 in total

1.  Paramagnetic relaxation enhancement of membrane proteins by incorporation of the metal-chelating unnatural amino acid 2-amino-3-(8-hydroxyquinolin-3-yl)propanoic acid (HQA).

Authors:  Sang Ho Park; Vivian S Wang; Jasmina Radoicic; Anna A De Angelis; Sabrina Berkamp; Stanley J Opella
Journal:  J Biomol NMR       Date:  2014-11-28       Impact factor: 2.835

Review 2.  Paramagnetic Chemical Probes for Studying Biological Macromolecules.

Authors:  Qing Miao; Christoph Nitsche; Henry Orton; Mark Overhand; Gottfried Otting; Marcellus Ubbink
Journal:  Chem Rev       Date:  2022-01-27       Impact factor: 72.087

3.  BCL::Fold--de novo prediction of complex and large protein topologies by assembly of secondary structure elements.

Authors:  Mert Karakaş; Nils Woetzel; Rene Staritzbichler; Nathan Alexander; Brian E Weiner; Jens Meiler
Journal:  PLoS One       Date:  2012-11-16       Impact factor: 3.240

4.  RosettaEPR: rotamer library for spin label structure and dynamics.

Authors:  Nathan S Alexander; Richard A Stein; Hanane A Koteiche; Kristian W Kaufmann; Hassane S McHaourab; Jens Meiler
Journal:  PLoS One       Date:  2013-09-05       Impact factor: 3.240

5.  Structure and physiological function of the human KCNQ1 channel voltage sensor intermediate state.

Authors:  Keenan C Taylor; Po Wei Kang; Panpan Hou; Nien-Du Yang; Georg Kuenze; Jarrod A Smith; Jingyi Shi; Hui Huang; Kelli McFarland White; Dungeng Peng; Alfred L George; Jens Meiler; Robert L McFeeters; Jianmin Cui; Charles R Sanders
Journal:  Elife       Date:  2020-02-25       Impact factor: 8.140

Review 6.  Sparse labeling of proteins: structural characterization from long range constraints.

Authors:  James H Prestegard; David A Agard; Kelley W Moremen; Laura A Lavery; Laura C Morris; Kari Pederson
Journal:  J Magn Reson       Date:  2014-04       Impact factor: 2.229
  6 in total

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