Literature DB >> 19556511

Solution nuclear magnetic resonance structure of membrane-integral diacylglycerol kinase.

Wade D Van Horn1, Hak-Jun Kim, Charles D Ellis, Arina Hadziselimovic, Endah S Sulistijo, Murthy D Karra, Changlin Tian, Frank D Sönnichsen, Charles R Sanders.   

Abstract

Escherichia coli diacylglycerol kinase (DAGK) represents a family of integral membrane enzymes that is unrelated to all other phosphotransferases. We have determined the three-dimensional structure of the DAGK homotrimer with the use of solution nuclear magnetic resonance. The third transmembrane helix from each subunit is domain-swapped with the first and second transmembrane segments from an adjacent subunit. Each of DAGK's three active sites resembles a portico. The cornice of the portico appears to be the determinant of DAGK's lipid substrate specificity and overhangs the site of phosphoryl transfer near the water-membrane interface. Mutations to cysteine that caused severe misfolding were located in or near the active site, indicating a high degree of overlap between sites responsible for folding and for catalysis.

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Year:  2009        PMID: 19556511      PMCID: PMC2764269          DOI: 10.1126/science.1171716

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  34 in total

1.  A transmembrane segment mimic derived from Escherichia coli diacylglycerol kinase inhibits protein activity.

Authors:  Anthony W Partridge; Roman A Melnyk; Dawn Yang; James U Bowie; Charles M Deber
Journal:  J Biol Chem       Date:  2003-04-09       Impact factor: 5.157

2.  Diacylglycerol kinase from Escherichia coli.

Authors:  J P Walsh; R M Bell
Journal:  Methods Enzymol       Date:  1992       Impact factor: 1.600

Review 3.  Disease-related misassembly of membrane proteins.

Authors:  Charles R Sanders; Jeffrey K Myers
Journal:  Annu Rev Biophys Biomol Struct       Date:  2004

4.  Diglyceride kinase mutants of Escherichia coli: inner membrane association of 1,2-diglyceride and its relation to synthesis of membrane-derived oligosaccharides.

Authors:  C R Raetz; K F Newman
Journal:  J Bacteriol       Date:  1979-02       Impact factor: 3.490

5.  Exploring the allowed sequence space of a membrane protein.

Authors:  J Wen; X Chen; J U Bowie
Journal:  Nat Struct Biol       Date:  1996-02

6.  A method for assessing the stability of a membrane protein.

Authors:  F W Lau; J U Bowie
Journal:  Biochemistry       Date:  1997-05-13       Impact factor: 3.162

7.  sn-1,2-diacylglycerol kinase of Escherichia coli. Diacylglycerol analogues define specificity and mechanism.

Authors:  J P Walsh; L Fahrner; R M Bell
Journal:  J Biol Chem       Date:  1990-03-15       Impact factor: 5.157

8.  Osmotic regulation and the biosynthesis of membrane-derived oligosaccharides in Escherichia coli.

Authors:  E P Kennedy
Journal:  Proc Natl Acad Sci U S A       Date:  1982-02       Impact factor: 11.205

9.  NMR assignments for a helical 40 kDa membrane protein.

Authors:  Kirill Oxenoid; Hak Jun Kim; Jaison Jacob; Frank D Sönnichsen; Charles R Sanders
Journal:  J Am Chem Soc       Date:  2004-04-28       Impact factor: 15.419

10.  The stress-responsive dgk gene from Streptococcus mutans encodes a putative undecaprenol kinase activity.

Authors:  Maciej Lis; Howard K Kuramitsu
Journal:  Infect Immun       Date:  2003-04       Impact factor: 3.441

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  106 in total

1.  Membrane protein dynamics in different environments: simulation study of the outer membrane protein X in a lipid bilayer and in a micelle.

Authors:  Alexandra Choutko; Alice Glättli; César Fernández; Christian Hilty; Kurt Wüthrich; Wilfred F van Gunsteren
Journal:  Eur Biophys J       Date:  2010-10-05       Impact factor: 1.733

2.  High-resolution membrane protein structure by joint calculations with solid-state NMR and X-ray experimental data.

Authors:  Ming Tang; Lindsay J Sperling; Deborah A Berthold; Charles D Schwieters; Anna E Nesbitt; Andrew J Nieuwkoop; Robert B Gennis; Chad M Rienstra
Journal:  J Biomol NMR       Date:  2011-09-22       Impact factor: 2.835

3.  Fast NMR data acquisition from bicelles containing a membrane-associated peptide at natural-abundance.

Authors:  Kazutoshi Yamamoto; Subramanian Vivekanandan; Ayyalusamy Ramamoorthy
Journal:  J Phys Chem B       Date:  2011-10-11       Impact factor: 2.991

4.  A geometric arrangement algorithm for structure determination of symmetric protein homo-oligomers from NOEs and RDCs.

Authors:  Jeffrey W Martin; Anthony K Yan; Chris Bailey-Kellogg; Pei Zhou; Bruce R Donald
Journal:  J Comput Biol       Date:  2011-10-28       Impact factor: 1.479

5.  VITAL NMR: using chemical shift derived secondary structure information for a limited set of amino acids to assess homology model accuracy.

Authors:  Michael C Brothers; Anna E Nesbitt; Michael J Hallock; Sanjeewa G Rupasinghe; Ming Tang; Jason Harris; Jerome Baudry; Mary A Schuler; Chad M Rienstra
Journal:  J Biomol NMR       Date:  2011-11-03       Impact factor: 2.835

6.  Cell-free synthesis of membrane subunits of ATP synthase in phospholipid bicelles: NMR shows subunit a fold similar to the protein in the cell membrane.

Authors:  Eva-Maria E Uhlemann; Hannah E Pierson; Robert H Fillingame; Oleg Y Dmitriev
Journal:  Protein Sci       Date:  2012-01-04       Impact factor: 6.725

7.  In situ 19F NMR studies of an E. coli membrane protein.

Authors:  Pan Shi; Dong Li; Hongwei Chen; Ying Xiong; Yusong Wang; Changlin Tian
Journal:  Protein Sci       Date:  2012-02-23       Impact factor: 6.725

Review 8.  Structures of membrane proteins.

Authors:  Kutti R Vinothkumar; Richard Henderson
Journal:  Q Rev Biophys       Date:  2010-02       Impact factor: 5.318

9.  Structural investigation of the C-terminal catalytic fragment of presenilin 1.

Authors:  Solmaz Sobhanifar; Birgit Schneider; Frank Löhr; Daniel Gottstein; Teppei Ikeya; Krzysztof Mlynarczyk; Wojciech Pulawski; Umesh Ghoshdastider; Michal Kolinski; Slawomir Filipek; Peter Güntert; Frank Bernhard; Volker Dötsch
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-05       Impact factor: 11.205

10.  Structure and multistate function of the transmembrane electron transporter CcdA.

Authors:  Jessica A Williamson; Seung-Hyun Cho; Jiqing Ye; Jean-Francois Collet; Jonathan R Beckwith; James J Chou
Journal:  Nat Struct Mol Biol       Date:  2015-09-21       Impact factor: 15.369

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