Literature DB >> 21475616

Constrained water access to the active site of cytochrome P450 from the piezophilic bacterium Photobacterium profundum.

Elena V Sineva1, Dmitri R Davydov.   

Abstract

Living species inhabiting ocean deeps must adapt to high hydrostatic pressure. This adaptation, which must enable functioning under conditions of promoted protein hydration, is especially important for proteins such as cytochromes P450 that exhibit functionally important hydration-dehydration dynamics. Here we study the interactions of substrates with cytochrome P450-SS9, a putative fatty acid hydroxylase from the piezophilic bacterium Photobacterium profundum SS9, and characterize the protein's barotropic properties. Comparison of P450-SS9 with cytochrome P450BM-3, a mesophilic fatty acid hydroxylase, suggests that P450-SS9 is characterized by severely confined accessibility and low water occupancy of the active site. This feature may reveal a mechanism of structural adaptation of the piezophilic enzyme. We also demonstrate that saturated and unsaturated fatty acids exert opposite effects on solvent accessibility and hydration of the active site. Modulation of the protein conformation by fatty acids is hypothesized to have an important physiological function in the piezophile.

Entities:  

Year:  2010        PMID: 21475616      PMCID: PMC3070315          DOI: 10.1080/08957959.2010.535208

Source DB:  PubMed          Journal:  High Press Res        ISSN: 0895-7959            Impact factor:   1.431


  18 in total

Review 1.  Pressure effects on in vivo microbial processes.

Authors:  D H Bartlett
Journal:  Biochim Biophys Acta       Date:  2002-03-25

2.  Dynamics of protein-bound water in the heme domain of P450BM3 studied by high-pressure spectroscopy: comparison with P450cam and P450 2B4.

Authors:  D R Davydov; G Hui Bon Hoa; J A Peterson
Journal:  Biochemistry       Date:  1999-01-12       Impact factor: 3.162

3.  A central role for water in the control of the spin state of cytochrome P-450scc.

Authors:  F Bancel; N Bec; C Ebel; R Lange
Journal:  Eur J Biochem       Date:  1997-12-01

4.  Flexibility and stability of the structure of cytochromes P450 3A4 and BM-3.

Authors:  E Anzenbacherová; N Bec; P Anzenbacher; J Hudecek; P Soucek; C Jung; A W Munro; R Lange
Journal:  Eur J Biochem       Date:  2000-05

5.  The nature of the reverse type I (modified type II) spectral change in liver microsomes.

Authors:  J B Schenkman; D L Cinti; S Orrenius; P Moldeus; R Kraschnitz
Journal:  Biochemistry       Date:  1972-11-07       Impact factor: 3.162

6.  Compressibility of the heme pocket of substrate analogue complexes of cytochrome P-450cam-CO. The effect of hydrostatic pressure on the Soret band.

Authors:  C Jung; G Hui Bon Hoa; D Davydov; E Gill; K Heremans
Journal:  Eur J Biochem       Date:  1995-10-15

7.  Life at depth: Photobacterium profundum genome sequence and expression analysis.

Authors:  A Vezzi; S Campanaro; M D'Angelo; F Simonato; N Vitulo; F M Lauro; A Cestaro; G Malacrida; B Simionati; N Cannata; C Romualdi; D H Bartlett; G Valle
Journal:  Science       Date:  2005-03-04       Impact factor: 47.728

8.  Rational engineering of cytochromes P450 2B6 and 2B11 for enhanced stability: Insights into structural importance of residue 334.

Authors:  Jyothi C Talakad; P Ross Wilderman; Dmitri R Davydov; Santosh Kumar; James R Halpert
Journal:  Arch Biochem Biophys       Date:  2009-11-26       Impact factor: 4.013

Review 9.  Oxygen activation by cytochrome P450 monooxygenase.

Authors:  Djemel Hamdane; Haoming Zhang; Paul Hollenberg
Journal:  Photosynth Res       Date:  2008-07-04       Impact factor: 3.573

10.  Allosteric transitions in cytochrome P450eryF explored with pressure-perturbation spectroscopy, lifetime FRET, and a novel fluorescent substrate, Fluorol-7GA.

Authors:  Dmitri R Davydov; Nadezhda Y Davydova; James R Halpert
Journal:  Biochemistry       Date:  2008-10-02       Impact factor: 3.162

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  4 in total

1.  Role of cavities and hydration in the pressure unfolding of T4 lysozyme.

Authors:  Nathaniel V Nucci; Brian Fuglestad; Evangelia A Athanasoula; A Joshua Wand
Journal:  Proc Natl Acad Sci U S A       Date:  2014-09-08       Impact factor: 11.205

2.  P450cin active site water: implications for substrate binding and solvent accessibility.

Authors:  Yarrow Madrona; Scott A Hollingsworth; Bushra Khan; Thomas L Poulos
Journal:  Biochemistry       Date:  2013-07-18       Impact factor: 3.162

3.  Cytochrome P450 from Photobacterium profundum SS9, a piezophilic bacterium, exhibits a tightened control of water access to the active site.

Authors:  Elena V Sineva; Dmitri R Davydov
Journal:  Biochemistry       Date:  2010-11-23       Impact factor: 3.162

4.  CYP261 enzymes from deep sea bacteria: a clue to conformational heterogeneity in cytochromes P450.

Authors:  Dmitri R Davydov; Elena V Sineva; Nadezhda Y Davydova; Douglas H Bartlett; James R Halpert
Journal:  Biotechnol Appl Biochem       Date:  2013-01-25       Impact factor: 2.431

  4 in total

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