Literature DB >> 18831537

Allosteric transitions in cytochrome P450eryF explored with pressure-perturbation spectroscopy, lifetime FRET, and a novel fluorescent substrate, Fluorol-7GA.

Dmitri R Davydov1, Nadezhda Y Davydova, James R Halpert.   

Abstract

To establish a direct method for monitoring substrate binding in cytochrome P450eryF applicable at elevated hydrostatic pressures, we introduce a laser dye Fluorol-7GA (F7GA) as a novel fluorescent ligand. The high intensity of fluorescence and the reasonable resolution of the excitation band from the absorbance bands of P450 allowed us to establish highly sensitive binding assays compatible with pressure perturbation. The interactions of F7GA with P450eryF cause an ample spin shift revealing cooperative binding ( S50 = 8.2 +/- 1.3 microM; n = 2.3 +/- 0.1). Fluorescence resonance energy transfer (FRET) experiments suggest the presence of at least two substrate binding sites with apparent K D values in the ranges of 0.1-0.3 and 6-9 microM. Similar to that observed earlier with CYP3A4, increasing hydrostatic pressure does not cause either a complete dissociation of the substrate complexes or a displacement of the spin equilibrium toward the low-spin state. Rather, increased pressure enhances the cooperativity of the F7GA-induced spin shift, so that the Hill coefficient approaches 3 at 2 kbar. Lifetime FRET experiments revealed an important increase in the affinity of the enzyme for F7GA at elevated pressures, suggesting that the binding of the ligand induces a conformational transition associated with an important increase in the level of protein hydration. This transition largely attenuates the solvent accessibility of the heme pocket and causes an unusual stability of the high-spin, substrate-bound enzyme at elevated pressures.

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Year:  2008        PMID: 18831537      PMCID: PMC2662524          DOI: 10.1021/bi8011803

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  45 in total

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8.  An electrostatically driven conformational transition is involved in the mechanisms of substrate binding and cooperativity in cytochrome P450eryF.

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9.  Allosteric mechanisms in P450eryF probed with 1-pyrenebutanol, a novel fluorescent substrate.

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  13 in total

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Review 3.  A novel type of allosteric regulation: functional cooperativity in monomeric proteins.

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Journal:  Arch Biochem Biophys       Date:  2012-01-08       Impact factor: 4.013

4.  The role of cytochrome P450 2B6 and 2B4 substrate access channel residues predicted based on crystal structures of the amlodipine complexes.

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5.  Electron transfer in the complex of membrane-bound human cytochrome P450 3A4 with the flavin domain of P450BM-3: the effect of oligomerization of the heme protein and intermittent modulation of the spin equilibrium.

Authors:  Dmitri R Davydov; Elena V Sineva; Srinivas Sistla; Nadezhda Y Davydova; Daniel J Frank; Stephen G Sligar; James R Halpert
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6.  Peripheral ligand-binding site in cytochrome P450 3A4 located with fluorescence resonance energy transfer (FRET).

Authors:  Dmitri R Davydov; Jessica A O Rumfeldt; Elena V Sineva; Harshica Fernando; Nadezhda Y Davydova; James R Halpert
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7.  Cytochrome P450 from Photobacterium profundum SS9, a piezophilic bacterium, exhibits a tightened control of water access to the active site.

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8.  Multiple substrate-binding sites are retained in cytochrome P450 3A4 mutants with decreased cooperativity.

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9.  Constrained water access to the active site of cytochrome P450 from the piezophilic bacterium Photobacterium profundum.

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