Literature DB >> 21459098

Thermodynamic analysis of mutant lac repressors.

Robert Daber1, Matthew A Sochor, Mitchell Lewis.   

Abstract

The lactose (lac) repressor is an allosteric protein that can respond to environmental changes. Mutations introduced into the DNA binding domain and the effector binding pocket affect the repressor's ability to respond to its environment. We have demonstrated how the observed phenotype is a consequence of altering the thermodynamic equilibrium constants. We discuss mutant repressors, which (1) show tighter repression; (2) induce with a previously noninducing species, orthonitrophenyl-β-D-galactoside; and (3) transform an inducible switch to one that is corepressed. The ability of point mutations to change multiple thermodynamic constants, and hence drastically alter the repressor's phenotype, shows how allosteric proteins can perform a wide array of similar yet distinct functions such as that exhibited in the Lac/Gal family of bacterial repressors.
Copyright © 2011 Elsevier Ltd. All rights reserved.

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Year:  2011        PMID: 21459098      PMCID: PMC4225698          DOI: 10.1016/j.jmb.2011.03.057

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  19 in total

1.  A family of bacterial regulators homologous to Gal and Lac repressors.

Authors:  M J Weickert; S Adhya
Journal:  J Biol Chem       Date:  1992-08-05       Impact factor: 5.157

2.  Towards evolving a better repressor.

Authors:  Robert Daber; Mitchell Lewis
Journal:  Protein Eng Des Sel       Date:  2009-09-02       Impact factor: 1.650

3.  Genetic studies of the lac repressor. XIII. Extensive amino acid replacements generated by the use of natural and synthetic nonsense suppressors.

Authors:  L G Kleina; J H Miller
Journal:  J Mol Biol       Date:  1990-03-20       Impact factor: 5.469

4.  Complex of lac repressor headpiece with a 14 base-pair lac operator fragment studied by two-dimensional nuclear magnetic resonance.

Authors:  R Boelens; R M Scheek; J H van Boom; R Kaptein
Journal:  J Mol Biol       Date:  1987-01-05       Impact factor: 5.469

5.  Mutant lac repressors with new specificities hint at rules for protein--DNA recognition.

Authors:  N Lehming; J Sartorius; B Kisters-Woike; B von Wilcken-Bergmann; B Müller-Hill
Journal:  EMBO J       Date:  1990-03       Impact factor: 11.598

6.  Role of Asp274 in lac repressor: diminished sugar binding and altered conformational effects in mutants.

Authors:  W I Chang; K S Matthews
Journal:  Biochemistry       Date:  1995-07-18       Impact factor: 3.162

7.  Lac repressor-operator interaction. 8. Lactose is an anti-inducer of the lac operon.

Authors:  A Jobe; S Bourgeois
Journal:  J Mol Biol       Date:  1973-04-05       Impact factor: 5.469

8.  Genetic studies of the lac repressor. XIV. Analysis of 4000 altered Escherichia coli lac repressors reveals essential and non-essential residues, as well as "spacers" which do not require a specific sequence.

Authors:  P Markiewicz; L G Kleina; C Cruz; S Ehret; J H Miller
Journal:  J Mol Biol       Date:  1994-07-29       Impact factor: 5.469

9.  Crystal structure of the lactose operon repressor and its complexes with DNA and inducer.

Authors:  M Lewis; G Chang; N C Horton; M A Kercher; H C Pace; M A Schumacher; R G Brennan; P Lu
Journal:  Science       Date:  1996-03-01       Impact factor: 47.728

10.  The interaction of the recognition helix of lac repressor with lac operator.

Authors:  N Lehming; J Sartorius; M Niemöller; G Genenger; B v Wilcken-Bergmann; B Müller-Hill
Journal:  EMBO J       Date:  1987-10       Impact factor: 11.598

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  18 in total

1.  In vivo tests of thermodynamic models of transcription repressor function.

Authors:  Sudheer Tungtur; Harlyn Skinner; Hongli Zhan; Liskin Swint-Kruse; Dorothy Beckett
Journal:  Biophys Chem       Date:  2011-06-15       Impact factor: 2.352

2.  Scaling of gene expression with transcription-factor fugacity.

Authors:  Franz M Weinert; Robert C Brewster; Mattias Rydenfelt; Rob Phillips; Willem K Kegel
Journal:  Phys Rev Lett       Date:  2014-12-16       Impact factor: 9.161

3.  Homolog comparisons further reconcile in vitro and in vivo correlations of protein activities by revealing over-looked physiological factors.

Authors:  Sudheer Tungtur; Kristen M Schwingen; Joshua J Riepe; Chamitha J Weeramange; Liskin Swint-Kruse
Journal:  Protein Sci       Date:  2019-08-09       Impact factor: 6.725

4.  The transcription factor titration effect dictates level of gene expression.

Authors:  Robert C Brewster; Franz M Weinert; Hernan G Garcia; Dan Song; Mattias Rydenfelt; Rob Phillips
Journal:  Cell       Date:  2014-03-06       Impact factor: 41.582

5.  Altering residues N125 and D149 impacts sugar effector binding and allosteric parameters in Escherichia coli lactose repressor.

Authors:  Jia Xu; Shirley Liu; Mingzhi Chen; Jianpeng Ma; Kathleen S Matthews
Journal:  Biochemistry       Date:  2011-09-30       Impact factor: 3.162

Review 6.  Figure 1 Theory Meets Figure 2 Experiments in the Study of Gene Expression.

Authors:  Rob Phillips; Nathan M Belliveau; Griffin Chure; Hernan G Garcia; Manuel Razo-Mejia; Clarissa Scholes
Journal:  Annu Rev Biophys       Date:  2019-05-06       Impact factor: 12.981

7.  Napoleon Is in Equilibrium.

Authors:  Rob Phillips
Journal:  Annu Rev Condens Matter Phys       Date:  2015-03       Impact factor: 16.109

Review 8.  Theory in Biology: Figure 1 or Figure 7?

Authors:  Rob Phillips
Journal:  Trends Cell Biol       Date:  2015-11-13       Impact factor: 20.808

9.  The genotype-phenotype landscape of an allosteric protein.

Authors:  Drew S Tack; Peter D Tonner; Abe Pressman; Nathan D Olson; Sasha F Levy; Eugenia F Romantseva; Nina Alperovich; Olga Vasilyeva; David Ross
Journal:  Mol Syst Biol       Date:  2021-03       Impact factor: 11.429

10.  An Autogenously Regulated Expression System for Gene Therapeutic Ocular Applications.

Authors:  Matthew A Sochor; Vidyullatha Vasireddy; Theodore G Drivas; Adam Wojno; Thu Doung; Ivan Shpylchak; Jeannette Bennicelli; Daniel Chung; Jean Bennett; Mitchell Lewis
Journal:  Sci Rep       Date:  2015-11-24       Impact factor: 4.379

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