Literature DB >> 24612990

The transcription factor titration effect dictates level of gene expression.

Robert C Brewster1, Franz M Weinert1, Hernan G Garcia2, Dan Song3, Mattias Rydenfelt4, Rob Phillips5.   

Abstract

Models of transcription are often built around a picture of RNA polymerase and transcription factors (TFs) acting on a single copy of a promoter. However, most TFs are shared between multiple genes with varying binding affinities. Beyond that, genes often exist at high copy number-in multiple identical copies on the chromosome or on plasmids or viral vectors with copy numbers in the hundreds. Using a thermodynamic model, we characterize the interplay between TF copy number and the demand for that TF. We demonstrate the parameter-free predictive power of this model as a function of the copy number of the TF and the number and affinities of the available specific binding sites; such predictive control is important for the understanding of transcription and the desire to quantitatively design the output of genetic circuits. Finally, we use these experiments to dynamically measure plasmid copy number through the cell cycle.
Copyright © 2014 Elsevier Inc. All rights reserved.

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Year:  2014        PMID: 24612990      PMCID: PMC4080642          DOI: 10.1016/j.cell.2014.02.022

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  55 in total

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Review 5.  Transcription activation by catabolite activator protein (CAP).

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7.  Inference of plasmid-copy-number mean and noise from single-cell gene expression data.

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  90 in total

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4.  Scaling of gene expression with transcription-factor fugacity.

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Review 7.  Tailor-made transcriptional biosensors for optimizing microbial cell factories.

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Review 9.  Using synthetic biology to make cells tomorrow's test tubes.

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10.  Engineered dCas9 with reduced toxicity in bacteria: implications for genetic circuit design.

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