Literature DB >> 21454653

Combinatorial readout of dual histone modifications by paired chromatin-associated modules.

Zhanxin Wang1, Dinshaw J Patel.   

Abstract

The study of histone modifications and their interaction with effector modules/proteins has attracted increasing attention in recent years. Accumulating evidence indicates that epigenetic regulation, which involves post-translational modification on histones and DNAs or the participation of RNAs, plays an important role in many cellular processes. Histone modifications can function individually but are also capable of functioning combinatorially as a pattern. Recently, much more attention has focused on interpreting combined histone patterns by their downstream effectors. Structure/function-based studies on paired module-mediated histone cross-talk have greatly enhanced our understanding of the plasticity of the "histone code" hypothesis.

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Year:  2011        PMID: 21454653      PMCID: PMC3099652          DOI: 10.1074/jbc.R111.219139

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  56 in total

1.  Structure and function of a human TAFII250 double bromodomain module.

Authors:  R H Jacobson; A G Ladurner; D S King; R Tjian
Journal:  Science       Date:  2000-05-26       Impact factor: 47.728

2.  Binding of the MLL PHD3 finger to histone H3K4me3 is required for MLL-dependent gene transcription.

Authors:  Pei-Yun Chang; Robert A Hom; Catherine A Musselman; Li Zhu; Alex Kuo; Or Gozani; Tatiana G Kutateladze; Michael L Cleary
Journal:  J Mol Biol       Date:  2010-05-07       Impact factor: 5.469

Review 3.  RNA meets chromatin.

Authors:  Emily Bernstein; C David Allis
Journal:  Genes Dev       Date:  2005-07-15       Impact factor: 11.361

Review 4.  Reading protein modifications with interaction domains.

Authors:  Bruce T Seet; Ivan Dikic; Ming-Ming Zhou; Tony Pawson
Journal:  Nat Rev Mol Cell Biol       Date:  2006-07       Impact factor: 94.444

5.  MDC1 directly binds phosphorylated histone H2AX to regulate cellular responses to DNA double-strand breaks.

Authors:  Manuel Stucki; Julie A Clapperton; Duaa Mohammad; Michael B Yaffe; Stephen J Smerdon; Stephen P Jackson
Journal:  Cell       Date:  2005-12-29       Impact factor: 41.582

Review 6.  Crosstalk among Histone Modifications.

Authors:  Tamaki Suganuma; Jerry L Workman
Journal:  Cell       Date:  2008-11-14       Impact factor: 41.582

7.  Crystal structure of the nucleosome core particle at 2.8 A resolution.

Authors:  K Luger; A W Mäder; R K Richmond; D F Sargent; T J Richmond
Journal:  Nature       Date:  1997-09-18       Impact factor: 49.962

8.  Flipping MLL1's switch one proline at a time.

Authors:  Edward J Grow; Joanna Wysocka
Journal:  Cell       Date:  2010-06-25       Impact factor: 41.582

9.  Structure of Dnmt3a bound to Dnmt3L suggests a model for de novo DNA methylation.

Authors:  Da Jia; Renata Z Jurkowska; Xing Zhang; Albert Jeltsch; Xiaodong Cheng
Journal:  Nature       Date:  2007-08-22       Impact factor: 49.962

10.  PHF8 mediates histone H4 lysine 20 demethylation events involved in cell cycle progression.

Authors:  Wen Liu; Bogdan Tanasa; Oksana V Tyurina; Tian Yuan Zhou; Reto Gassmann; Wei Ting Liu; Kenneth A Ohgi; Chris Benner; Ivan Garcia-Bassets; Aneel K Aggarwal; Arshad Desai; Pieter C Dorrestein; Christopher K Glass; Michael G Rosenfeld
Journal:  Nature       Date:  2010-07-11       Impact factor: 49.962

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  29 in total

1.  Bivalent recognition of nucleosomes by the tandem PHD fingers of the CHD4 ATPase is required for CHD4-mediated repression.

Authors:  Catherine A Musselman; Julita Ramírez; Jennifer K Sims; Robyn E Mansfield; Samuel S Oliver; John M Denu; Joel P Mackay; Paul A Wade; James Hagman; Tatiana G Kutateladze
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-03       Impact factor: 11.205

2.  Sequence requirements for combinatorial recognition of histone H3 by the MRG15 and Pf1 subunits of the Rpd3S/Sin3S corepressor complex.

Authors:  Ganesan Senthil Kumar; William Chang; Tao Xie; Anand Patel; Yongbo Zhang; Gang Greg Wang; Gregory David; Ishwar Radhakrishnan
Journal:  J Mol Biol       Date:  2012-06-21       Impact factor: 5.469

Review 3.  Environmental exposures, epigenetic changes and the risk of lupus.

Authors:  E C Somers; B C Richardson
Journal:  Lupus       Date:  2014-05       Impact factor: 2.911

Review 4.  Combinatorial complexity in chromatin structure and function: revisiting the histone code.

Authors:  Oliver J Rando
Journal:  Curr Opin Genet Dev       Date:  2012-03-20       Impact factor: 5.578

Review 5.  A Structural Perspective on Readout of Epigenetic Histone and DNA Methylation Marks.

Authors:  Dinshaw J Patel
Journal:  Cold Spring Harb Perspect Biol       Date:  2016-03-01       Impact factor: 10.005

Review 6.  Partners in crime: The role of tandem modules in gene transcription.

Authors:  Rajal Sharma; Ming-Ming Zhou
Journal:  Protein Sci       Date:  2015-06-11       Impact factor: 6.725

7.  ZMYND8 Reads the Dual Histone Mark H3K4me1-H3K14ac to Antagonize the Expression of Metastasis-Linked Genes.

Authors:  Na Li; Yuanyuan Li; Jie Lv; Xiangdong Zheng; Hong Wen; Hongjie Shen; Guangjing Zhu; Tsai-Yu Chen; Shilpa S Dhar; Pu-Yeh Kan; Zhibin Wang; Ramin Shiekhattar; Xiaobing Shi; Fei Lan; Kaifu Chen; Wei Li; Haitao Li; Min Gyu Lee
Journal:  Mol Cell       Date:  2016-07-28       Impact factor: 17.970

Review 8.  Formation of Chromatin Subcompartments by Phase Separation.

Authors:  Fabian Erdel; Karsten Rippe
Journal:  Biophys J       Date:  2018-04-06       Impact factor: 4.033

9.  Structural Basis for the Unique Multivalent Readout of Unmodified H3 Tail by Arabidopsis ORC1b BAH-PHD Cassette.

Authors:  Sisi Li; Zhenlin Yang; Xuan Du; Rui Liu; Alex W Wilkinson; Or Gozani; Steven E Jacobsen; Dinshaw J Patel; Jiamu Du
Journal:  Structure       Date:  2016-02-11       Impact factor: 5.006

Review 10.  Structural biology-based insights into combinatorial readout and crosstalk among epigenetic marks.

Authors:  Jiamu Du; Dinshaw J Patel
Journal:  Biochim Biophys Acta       Date:  2014-04-18
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