Literature DB >> 26876097

Structural Basis for the Unique Multivalent Readout of Unmodified H3 Tail by Arabidopsis ORC1b BAH-PHD Cassette.

Sisi Li1, Zhenlin Yang2, Xuan Du2, Rui Liu3, Alex W Wilkinson4, Or Gozani4, Steven E Jacobsen5, Dinshaw J Patel1, Jiamu Du6.   

Abstract

DNA replication initiation relies on the formation of the origin recognition complex (ORC). The plant ORC subunit 1 (ORC1) protein possesses a conserved N-terminal BAH domain with an embedded plant-specific PHD finger, whose function may be potentially regulated by an epigenetic mechanism. Here, we report structural and biochemical studies on the Arabidopsis thaliana ORC1b BAH-PHD cassette which specifically recognizes the unmodified H3 tail. The crystal structure of ORC1b BAH-PHD cassette in complex with an H3(1-15) peptide reveals a strict requirement for the unmodified state of R2, T3, and K4 on the H3 tail and a novel multivalent BAH and PHD readout mode for H3 peptide recognition. Such recognition may contribute to epigenetic regulation of the initiation of DNA replication.
Copyright © 2016 Elsevier Ltd. All rights reserved.

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Year:  2016        PMID: 26876097      PMCID: PMC4775424          DOI: 10.1016/j.str.2016.01.004

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  30 in total

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Authors:  Mirit I Aladjem
Journal:  Nat Rev Genet       Date:  2007-07-10       Impact factor: 53.242

3.  Structural basis of DNA replication origin recognition by an ORC protein.

Authors:  Martin Gaudier; Barbara S Schuwirth; Sarah L Westcott; Dale B Wigley
Journal:  Science       Date:  2007-08-31       Impact factor: 47.728

4.  Arabidopsis ORC1 is a PHD-containing H3K4me3 effector that regulates transcription.

Authors:  María de la Paz Sanchez; Crisanto Gutierrez
Journal:  Proc Natl Acad Sci U S A       Date:  2009-01-26       Impact factor: 11.205

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Authors:  Duane L Guernsey; Makoto Matsuoka; Haiyan Jiang; Susan Evans; Christine Macgillivray; Mathew Nightingale; Scott Perry; Meghan Ferguson; Marissa LeBlanc; Jean Paquette; Lysanne Patry; Andrea L Rideout; Aidan Thomas; Andrew Orr; Chris R McMaster; Jacques L Michaud; Cheri Deal; Sylvie Langlois; Duane W Superneau; Sandhya Parkash; Mark Ludman; David L Skidmore; Mark E Samuels
Journal:  Nat Genet       Date:  2011-02-27       Impact factor: 38.330

6.  Replication origin recognition and deformation by a heterodimeric archaeal Orc1 complex.

Authors:  Erin L Cunningham Dueber; Jacob E Corn; Stephen D Bell; James M Berger
Journal:  Science       Date:  2007-08-31       Impact factor: 47.728

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9.  Genome-wide mapping of Arabidopsis thaliana origins of DNA replication and their associated epigenetic marks.

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Journal:  Nat Struct Mol Biol       Date:  2011-02-06       Impact factor: 15.369

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Authors:  Bernard P Duncker; Igor N Chesnokov; Brendan J McConkey
Journal:  Genome Biol       Date:  2009-03-17       Impact factor: 13.583

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  11 in total

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Authors:  Lian-Mei Tan; Rui Liu; Bo-Wen Gu; Cui-Jun Zhang; Jinyan Luo; Jing Guo; Yuhua Wang; Lixian Chen; Xuan Du; Sisi Li; Chang-Rong Shao; Yin-Na Su; Xue-Wei Cai; Rong-Nan Lin; Lin Li; She Chen; Jiamu Du; Xin-Jian He
Journal:  Plant Cell       Date:  2020-04-30       Impact factor: 11.277

Review 2.  Insights into newly discovered marks and readers of epigenetic information.

Authors:  Forest H Andrews; Brian D Strahl; Tatiana G Kutateladze
Journal:  Nat Chem Biol       Date:  2016-08-18       Impact factor: 15.040

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Review 4.  Biological role and mechanism of chromatin readers in plants.

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Journal:  Biochem J       Date:  2017-05-04       Impact factor: 3.857

6.  The plant cell cycle: Pre-Replication complex formation and controls.

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Journal:  Genet Mol Biol       Date:  2017-03-16       Impact factor: 1.771

7.  Origin Recognition Complex (ORC) Evolution Is Influenced by Global Gene Duplication/Loss Patterns in Eukaryotic Genomes.

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8.  Structural insight into the assembly and conformational activation of human origin recognition complex.

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9.  Coupling of H3K27me3 recognition with transcriptional repression through the BAH-PHD-CPL2 complex in Arabidopsis.

Authors:  Yi-Zhe Zhang; Jianlong Yuan; Lingrui Zhang; Chunxiang Chen; Yuhua Wang; Guiping Zhang; Li Peng; Si-Si Xie; Jing Jiang; Jian-Kang Zhu; Jiamu Du; Cheng-Guo Duan
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10.  Dual recognition of H3K4me3 and H3K27me3 by a plant histone reader SHL.

Authors:  Shuiming Qian; Xinchen Lv; Ray N Scheid; Li Lu; Zhenlin Yang; Wei Chen; Rui Liu; Melissa D Boersma; John M Denu; Xuehua Zhong; Jiamu Du
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