Literature DB >> 26059070

Partners in crime: The role of tandem modules in gene transcription.

Rajal Sharma1, Ming-Ming Zhou1.   

Abstract

Histones and their modifications play an important role in the regulation of gene transcription. Numerous modifications, such as acetylation, phosphorylation, methylation, ubiquitination, and SUMOylation, have been described. These modifications almost always co-occur and thereby increase the combinatorial complexity of post-translational modification detection. The domains that recognize these histone modifications often occur in tandem in the context of larger proteins and complexes. The presence of multiple modifications can positively or negatively regulate the binding of these tandem domains, influencing downstream cellular function. Alternatively, these tandem domains can have novel functions from their independent parts. Here we summarize structural and functional information known about major tandem domains and their histone binding properties. An understanding of these interactions is key for the development of epigenetic therapy.
© 2015 The Protein Society.

Keywords:  chromatin; gene transcription; histone; post-translational modifications; protein modular domains

Mesh:

Substances:

Year:  2015        PMID: 26059070      PMCID: PMC4570530          DOI: 10.1002/pro.2711

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  102 in total

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2.  BS69/ZMYND11 reads and connects histone H3.3 lysine 36 trimethylation-decorated chromatin to regulated pre-mRNA processing.

Authors:  Rui Guo; Lijuan Zheng; Juw Won Park; Ruitu Lv; Hao Chen; Fangfang Jiao; Wenqi Xu; Shirong Mu; Hong Wen; Jinsong Qiu; Zhentian Wang; Pengyuan Yang; Feizhen Wu; Jingyi Hui; Xiangdong Fu; Xiaobing Shi; Yujiang Geno Shi; Yi Xing; Fei Lan; Yang Shi
Journal:  Mol Cell       Date:  2014-09-25       Impact factor: 17.970

3.  Structural insight into coordinated recognition of trimethylated histone H3 lysine 9 (H3K9me3) by the plant homeodomain (PHD) and tandem tudor domain (TTD) of UHRF1 (ubiquitin-like, containing PHD and RING finger domains, 1) protein.

Authors:  Jingdong Cheng; Yi Yang; Jian Fang; Jianxiong Xiao; Tingting Zhu; Fei Chen; Ping Wang; Ze Li; Huirong Yang; Yanhui Xu
Journal:  J Biol Chem       Date:  2012-11-16       Impact factor: 5.157

4.  Accessibility of different histone H3-binding domains of UHRF1 is allosterically regulated by phosphatidylinositol 5-phosphate.

Authors:  Kathy A Gelato; Maria Tauber; Michelle S Ong; Stefan Winter; Kyoko Hiragami-Hamada; Julia Sindlinger; Alexander Lemak; Yvette Bultsma; Scott Houliston; Dirk Schwarzer; Nullin Divecha; Cheryl H Arrowsmith; Wolfgang Fischle
Journal:  Mol Cell       Date:  2014-05-08       Impact factor: 17.970

5.  Structural insights into acetylated-histone H4 recognition by the bromodomain-PHD finger module of human transcriptional coactivator CBP.

Authors:  Alexander N Plotnikov; Shuai Yang; Thomas Jiachi Zhou; Elena Rusinova; Antonio Frasca; Ming-Ming Zhou
Journal:  Structure       Date:  2013-12-19       Impact factor: 5.006

6.  Scaling the druggability landscape of human bromodomains, a new class of drug targets.

Authors:  Guangtao Zhang; Roberto Sanchez; Ming-Ming Zhou
Journal:  J Med Chem       Date:  2012-08-28       Impact factor: 7.446

7.  ZMYND11 links histone H3.3K36me3 to transcription elongation and tumour suppression.

Authors:  Hong Wen; Yuanyuan Li; Yuanxin Xi; Shiming Jiang; Sabrina Stratton; Danni Peng; Kaori Tanaka; Yongfeng Ren; Zheng Xia; Jun Wu; Bing Li; Michelle C Barton; Wei Li; Haitao Li; Xiaobing Shi
Journal:  Nature       Date:  2014-03-02       Impact factor: 49.962

8.  The methyltransferase NSD3 has chromatin-binding motifs, PHD5-C5HCH, that are distinct from other NSD (nuclear receptor SET domain) family members in their histone H3 recognition.

Authors:  Chao He; Fudong Li; Jiahai Zhang; Jihui Wu; Yunyu Shi
Journal:  J Biol Chem       Date:  2012-12-26       Impact factor: 5.157

9.  Association of UHRF1 with methylated H3K9 directs the maintenance of DNA methylation.

Authors:  Scott B Rothbart; Krzysztof Krajewski; Nataliya Nady; Wolfram Tempel; Sheng Xue; Aimee I Badeaux; Dalia Barsyte-Lovejoy; Jorge Y Martinez; Mark T Bedford; Stephen M Fuchs; Cheryl H Arrowsmith; Brian D Strahl
Journal:  Nat Struct Mol Biol       Date:  2012-09-30       Impact factor: 15.369

10.  Small-molecule inhibition of BRDT for male contraception.

Authors:  Martin M Matzuk; Michael R McKeown; Panagis Filippakopoulos; Qinglei Li; Lang Ma; Julio E Agno; Madeleine E Lemieux; Sarah Picaud; Richard N Yu; Jun Qi; Stefan Knapp; James E Bradner
Journal:  Cell       Date:  2012-08-17       Impact factor: 41.582

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  4 in total

1.  Engineered Reader Proteins for Enhanced Detection of Methylated Lysine on Histones.

Authors:  Katherine I Albanese; Mackenzie W Krone; Christopher J Petell; Madison M Parker; Brian D Strahl; Eric M Brustad; Marcey L Waters
Journal:  ACS Chem Biol       Date:  2019-11-01       Impact factor: 5.100

Review 2.  Structural features and inhibitors of bromodomains.

Authors:  Jamel Meslamani; Steven G Smith; Roberto Sanchez; Ming-Ming Zhou
Journal:  Drug Discov Today Technol       Date:  2016-09-22

3.  3,4-dihydroxytoluene, a metabolite of rutin, suppresses the progression of nonalcoholic fatty liver disease in mice by inhibiting p300 histone acetyltransferase activity.

Authors:  Jangho Lee; Ji-Hye Song; Min-Yu Chung; Jin-Hyuk Lee; Tae-Gyu Nam; Jae Ho Park; Jin-Taek Hwang; Hyo-Kyoung Choi
Journal:  Acta Pharmacol Sin       Date:  2020-12-10       Impact factor: 7.169

4.  Tannic acid, a novel histone acetyltransferase inhibitor, prevents non-alcoholic fatty liver disease both in vivo and in vitro model.

Authors:  Min-Yu Chung; Ji-Hye Song; Jinhyuk Lee; Eun Ju Shin; Jae Ho Park; Seung-Hyun Lee; Jin-Taek Hwang; Hyo-Kyoung Choi
Journal:  Mol Metab       Date:  2018-11-10       Impact factor: 7.422

  4 in total

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