Literature DB >> 21451155

MRB3010 is a core component of the MRB1 complex that facilitates an early step of the kinetoplastid RNA editing process.

Michelle L Ammerman1, Hassan Hashimi, Lucie Novotná, Zdenka Cicová, Sarah M McEvoy, Julius Lukes, Laurie K Read.   

Abstract

Gene expression in the mitochondria of the kinetoplastid parasite Trypanosoma brucei is regulated primarily post-transcriptionally at the stages of RNA processing, editing, and turnover. The mitochondrial RNA-binding complex 1 (MRB1) is a recently identified multiprotein complex containing components with distinct functions during different aspects of RNA metabolism, such as guide RNA (gRNA) and mRNA turnover, precursor transcript processing, and RNA editing. In this study we examined the function of the MRB1 protein, Tb927.5.3010, which we term MRB3010. We show that MRB3010 is essential for growth of both procyclic form and bloodstream form life-cycle stages of T. brucei. Down-regulation of MRB3010 by RNAi leads to a dramatic inhibition of RNA editing, yet its depletion does not impact total gRNA levels. Rather, it appears to affect the editing process at an early stage, as indicated by the accumulation of pre-edited and small partially edited RNAs. MRB3010 is present in large (>20S) complexes and exhibits both RNA-dependent and RNA-independent interactions with other MRB1 complex proteins. Comparison of proteins isolated with MRB3010 tagged at its endogenous locus to those reported from other MRB1 complex purifications strongly suggests the presence of an MRB1 "core" complex containing five to six proteins, including MRB3010. Together, these data further our understanding of the function and composition of the imprecisely defined MRB1 complex.

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Year:  2011        PMID: 21451155      PMCID: PMC3078736          DOI: 10.1261/rna.2446311

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  42 in total

1.  The trypanosome homolog of human p32 interacts with RBP16 and stimulates its gRNA binding activity.

Authors:  M L Hayman; M M Miller; D M Chandler; C C Goulah; L K Read
Journal:  Nucleic Acids Res       Date:  2001-12-15       Impact factor: 16.971

2.  Role of uridylate-specific exoribonuclease activity in Trypanosoma brucei RNA editing.

Authors:  Robert P Igo; David S Weston; Nancy Lewis Ernst; Aswini K Panigrahi; Reza Salavati; Kenneth Stuart
Journal:  Eukaryot Cell       Date:  2002-02

3.  Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search.

Authors:  Andrew Keller; Alexey I Nesvizhskii; Eugene Kolker; Ruedi Aebersold
Journal:  Anal Chem       Date:  2002-10-15       Impact factor: 6.986

4.  Highly efficient tandem affinity purification of trypanosome protein complexes based on a novel epitope combination.

Authors:  Bernd Schimanski; Tu N Nguyen; Arthur Günzl
Journal:  Eukaryot Cell       Date:  2005-11

5.  Isolation and characterization of mitochondrial ribosomes and ribosomal subunits from Leishmania tarentolae.

Authors:  Dmitri A Maslov; Manjuli R Sharma; Evelin Butler; Arnold M Falick; Mari Gingery; Rajendra K Agrawal; Linda L Spremulli; Larry Simpson
Journal:  Mol Biochem Parasitol       Date:  2006-03-24       Impact factor: 1.759

6.  The two RNA ligases of the Trypanosoma brucei RNA editing complex: cloning the essential band IV gene and identifying the band V gene.

Authors:  L N Rusché; C E Huang; K J Piller; M Hemann; E Wirtz; B Sollner-Webb
Journal:  Mol Cell Biol       Date:  2001-02       Impact factor: 4.272

7.  Crystal structures of T. brucei MRP1/MRP2 guide-RNA binding complex reveal RNA matchmaking mechanism.

Authors:  Maria A Schumacher; Elham Karamooz; Alena Zíková; Lukás Trantírek; Julius Lukes
Journal:  Cell       Date:  2006-08-25       Impact factor: 41.582

8.  RNA editing-associated protein 1 is an RNA binding protein with specificity for preedited mRNA.

Authors:  S Madison-Antenucci; S L Hajduk
Journal:  Mol Cell       Date:  2001-04       Impact factor: 17.970

9.  A 100-kD complex of two RNA-binding proteins from mitochondria of Leishmania tarentolae catalyzes RNA annealing and interacts with several RNA editing components.

Authors:  Ruslan Aphasizhev; Inna Aphasizheva; Robert E Nelson; Larry Simpson
Journal:  RNA       Date:  2003-01       Impact factor: 4.942

10.  An essential role of KREPB4 in RNA editing and structural integrity of the editosome in Trypanosoma brucei.

Authors:  Vinod Kumar Babbarwal; Michele Fleck; Nancy Lewis Ernst; Achim Schnaufer; Kenneth Stuart
Journal:  RNA       Date:  2007-03-16       Impact factor: 4.942

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  32 in total

1.  Differential Editosome Protein Function between Life Cycle Stages of Trypanosoma brucei.

Authors:  Suzanne M McDermott; Xuemin Guo; Jason Carnes; Kenneth Stuart
Journal:  J Biol Chem       Date:  2015-08-24       Impact factor: 5.157

2.  Guide RNA biogenesis involves a novel RNase III family endoribonuclease in Trypanosoma brucei.

Authors:  Bhaskara Reddy Madina; Gokulan Kuppan; Ajay A Vashisht; Yu-He Liang; Kurtis M Downey; James A Wohlschlegel; Xinhua Ji; Sing-Hoi Sze; James C Sacchettini; Laurie K Read; Jorge Cruz-Reyes
Journal:  RNA       Date:  2011-08-02       Impact factor: 4.942

Review 3.  High throughput sequencing revolution reveals conserved fundamentals of U-indel editing.

Authors:  Sara L Zimmer; Rachel M Simpson; Laurie K Read
Journal:  Wiley Interdiscip Rev RNA       Date:  2018-06-11       Impact factor: 9.957

Review 4.  Mitochondrial RNA editing in trypanosomes: small RNAs in control.

Authors:  Ruslan Aphasizhev; Inna Aphasizheva
Journal:  Biochimie       Date:  2014-01-17       Impact factor: 4.079

5.  Trypanosome RNA Editing Mediator Complex proteins have distinct functions in gRNA utilization.

Authors:  Rachel M Simpson; Andrew E Bruno; Runpu Chen; Kaylen Lott; Brianna L Tylec; Jonathan E Bard; Yijun Sun; Michael J Buck; Laurie K Read
Journal:  Nucleic Acids Res       Date:  2017-07-27       Impact factor: 16.971

6.  Functional characterization of two paralogs that are novel RNA binding proteins influencing mitochondrial transcripts of Trypanosoma brucei.

Authors:  Lucie Kafková; Michelle L Ammerman; Drahomíra Faktorová; John C Fisk; Sara L Zimmer; Roman Sobotka; Laurie K Read; Julius Lukes; Hassan Hashimi
Journal:  RNA       Date:  2012-08-16       Impact factor: 4.942

7.  An arginine-glycine-rich RNA binding protein impacts the abundance of specific mRNAs in the mitochondria of Trypanosoma brucei.

Authors:  Natalie M McAdams; Michelle L Ammerman; Julee Nanduri; Kaylen Lott; John C Fisk; Laurie K Read
Journal:  Eukaryot Cell       Date:  2014-12-05

Review 8.  U-Insertion/Deletion mRNA-Editing Holoenzyme: Definition in Sight.

Authors:  Inna Aphasizheva; Ruslan Aphasizhev
Journal:  Trends Parasitol       Date:  2015-11-10

Review 9.  Lexis and Grammar of Mitochondrial RNA Processing in Trypanosomes.

Authors:  Inna Aphasizheva; Juan Alfonzo; Jason Carnes; Igor Cestari; Jorge Cruz-Reyes; H Ulrich Göringer; Stephen Hajduk; Julius Lukeš; Susan Madison-Antenucci; Dmitri A Maslov; Suzanne M McDermott; Torsten Ochsenreiter; Laurie K Read; Reza Salavati; Achim Schnaufer; André Schneider; Larry Simpson; Kenneth Stuart; Vyacheslav Yurchenko; Z Hong Zhou; Alena Zíková; Liye Zhang; Sara Zimmer; Ruslan Aphasizhev
Journal:  Trends Parasitol       Date:  2020-02-28

Review 10.  Trypanosome RNA editing: the complexity of getting U in and taking U out.

Authors:  Laurie K Read; Julius Lukeš; Hassan Hashimi
Journal:  Wiley Interdiscip Rev RNA       Date:  2015-11-02       Impact factor: 9.957

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