Literature DB >> 32191849

Lexis and Grammar of Mitochondrial RNA Processing in Trypanosomes.

Inna Aphasizheva1, Juan Alfonzo2, Jason Carnes3, Igor Cestari4, Jorge Cruz-Reyes5, H Ulrich Göringer6, Stephen Hajduk7, Julius Lukeš8, Susan Madison-Antenucci9, Dmitri A Maslov10, Suzanne M McDermott3, Torsten Ochsenreiter11, Laurie K Read12, Reza Salavati4, Achim Schnaufer13, André Schneider14, Larry Simpson15, Kenneth Stuart3, Vyacheslav Yurchenko16, Z Hong Zhou15, Alena Zíková8, Liye Zhang17, Sara Zimmer18, Ruslan Aphasizhev19.   

Abstract

Trypanosoma brucei spp. cause African human and animal trypanosomiasis, a burden on health and economy in Africa. These hemoflagellates are distinguished by a kinetoplast nucleoid containing mitochondrial DNAs of two kinds: maxicircles encoding ribosomal RNAs (rRNAs) and proteins and minicircles bearing guide RNAs (gRNAs) for mRNA editing. All RNAs are produced by a phage-type RNA polymerase as 3' extended precursors, which undergo exonucleolytic trimming. Most pre-mRNAs proceed through 3' adenylation, uridine insertion/deletion editing, and 3' A/U-tailing. The rRNAs and gRNAs are 3' uridylated. Historically, RNA editing has attracted major research effort, and recently essential pre- and postediting processing events have been discovered. Here, we classify the key players that transform primary transcripts into mature molecules and regulate their function and turnover.
Copyright © 2020 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  RNA decay; RNA editing; Trypanosoma; kinetoplast; mitochondria; polyadenylation

Mesh:

Substances:

Year:  2020        PMID: 32191849      PMCID: PMC7083771          DOI: 10.1016/j.pt.2020.01.006

Source DB:  PubMed          Journal:  Trends Parasitol        ISSN: 1471-4922


  171 in total

1.  Cell biology. Irremediable complexity?

Authors:  Michael W Gray; Julius Lukes; John M Archibald; Patrick J Keeling; W Ford Doolittle
Journal:  Science       Date:  2010-11-12       Impact factor: 47.728

2.  REH2C Helicase and GRBC Subcomplexes May Base Pair through mRNA and Small Guide RNA in Kinetoplastid Editosomes.

Authors:  Vikas Kumar; Bhaskara R Madina; Shelly Gulati; Ajay A Vashisht; Chiedza Kanyumbu; Brittany Pieters; Afzal Shakir; James A Wohlschlegel; Laurie K Read; Blaine H M Mooers; Jorge Cruz-Reyes
Journal:  J Biol Chem       Date:  2016-01-14       Impact factor: 5.157

Review 3.  'Gestalt,' composition and function of the Trypanosoma brucei editosome.

Authors:  H Ulrich Göringer
Journal:  Annu Rev Microbiol       Date:  2012       Impact factor: 15.500

4.  Trypanosome RNA Editing Mediator Complex proteins have distinct functions in gRNA utilization.

Authors:  Rachel M Simpson; Andrew E Bruno; Runpu Chen; Kaylen Lott; Brianna L Tylec; Jonathan E Bard; Yijun Sun; Michael J Buck; Laurie K Read
Journal:  Nucleic Acids Res       Date:  2017-07-27       Impact factor: 16.971

5.  Cloning and characterization of two guide RNA-binding proteins from mitochondria of Crithidia fasciculata: gBP27, a novel protein, and gBP29, the orthologue of Trypanosoma brucei gBP21.

Authors:  D Blom; C K Breek; D Speijer; A O Muijsers; R Benne
Journal:  Nucleic Acids Res       Date:  2001-07-15       Impact factor: 16.971

6.  Crystal structures of T. brucei MRP1/MRP2 guide-RNA binding complex reveal RNA matchmaking mechanism.

Authors:  Maria A Schumacher; Elham Karamooz; Alena Zíková; Lukás Trantírek; Julius Lukes
Journal:  Cell       Date:  2006-08-25       Impact factor: 41.582

7.  Differential localization of nuclear-encoded tRNAs between the cytosol and mitochondrion in Leishmania tarentolae.

Authors:  Stephen T Kapushoc; Juan D Alfonzo; Larry Simpson
Journal:  RNA       Date:  2002-01       Impact factor: 4.942

Review 8.  Trypanosome RNA editing: the complexity of getting U in and taking U out.

Authors:  Laurie K Read; Julius Lukeš; Hassan Hashimi
Journal:  Wiley Interdiscip Rev RNA       Date:  2015-11-02       Impact factor: 9.957

9.  Polyadenylation regulates the stability of Trypanosoma brucei mitochondrial RNAs.

Authors:  Christopher M Ryan; Kevin T Militello; Laurie K Read
Journal:  J Biol Chem       Date:  2003-06-11       Impact factor: 5.157

10.  Native mitochondrial RNA-binding complexes in kinetoplastid RNA editing differ in guide RNA composition.

Authors:  Bhaskara R Madina; Vikas Kumar; Richard Metz; Blaine H M Mooers; Ralf Bundschuh; Jorge Cruz-Reyes
Journal:  RNA       Date:  2014-05-27       Impact factor: 4.942

View more
  13 in total

1.  Trypanosoma cruzi strain and starvation-driven mitochondrial RNA editing and transcriptome variability.

Authors:  Evgeny S Gerasimov; Roger Ramirez-Barrios; Vyacheslav Yurchenko; Sara L Zimmer
Journal:  RNA       Date:  2022-04-25       Impact factor: 5.636

2.  Single-cell genomics unveils a canonical origin of the diverse mitochondrial genomes of euglenozoans.

Authors:  Kristína Záhonová; Gordon Lax; Savar D Sinha; Guy Leonard; Thomas A Richards; Julius Lukeš; Jeremy G Wideman
Journal:  BMC Biol       Date:  2021-05-17       Impact factor: 7.431

3.  Divergent Cytochrome c Maturation System in Kinetoplastid Protists.

Authors:  Asma Belbelazi; Rachel Neish; Martin Carr; Jeremy C Mottram; Michael L Ginger
Journal:  mBio       Date:  2021-05-04       Impact factor: 7.867

4.  Organization of minicircle cassettes and guide RNA genes in Trypanosoma brucei.

Authors:  Achim Schnaufer; Nicholas J Savill; Sinclair Cooper; Elizabeth S Wadsworth
Journal:  RNA       Date:  2022-04-12       Impact factor: 5.636

5.  Vestiges of the Bacterial Signal Recognition Particle-Based Protein Targeting in Mitochondria.

Authors:  Jan Pyrih; Tomáš Pánek; Ignacio Miguel Durante; Vendula Rašková; Kristýna Cimrhanzlová; Eva Kriegová; Anastasios D Tsaousis; Marek Eliáš; Julius Lukeš
Journal:  Mol Biol Evol       Date:  2021-07-29       Impact factor: 16.240

6.  Selective nuclear export of mRNAs is promoted by DRBD18 in Trypanosoma brucei.

Authors:  Amartya Mishra; Jan Naseer Kaur; Daniel I McSkimming; Eva Hegedűsová; Ashutosh P Dubey; Martin Ciganda; Zdeněk Paris; Laurie K Read
Journal:  Mol Microbiol       Date:  2021-07-04       Impact factor: 3.979

7.  Developmental regulation of edited CYb and COIII mitochondrial mRNAs is achieved by distinct mechanisms in Trypanosoma brucei.

Authors:  Joseph T Smith; Eva Doleželová; Brianna Tylec; Jonathan E Bard; Runpu Chen; Yijun Sun; Alena Zíková; Laurie K Read
Journal:  Nucleic Acids Res       Date:  2020-09-04       Impact factor: 16.971

8.  Poly(A) binding KPAF4/5 complex stabilizes kinetoplast mRNAs in Trypanosoma brucei.

Authors:  Inna Aphasizheva; Tian Yu; Takuma Suematsu; Qiushi Liu; Mikhail V Mesitov; Clinton Yu; Lan Huang; Liye Zhang; Ruslan Aphasizhev
Journal:  Nucleic Acids Res       Date:  2020-09-04       Impact factor: 19.160

9.  Site-specific and substrate-specific control of accurate mRNA editing by a helicase complex in trypanosomes.

Authors:  Vikas Kumar; Alasdair Ivens; Zachary Goodall; Joshua Meehan; Pawan Kumar Doharey; Andrew Hillhouse; Daniel Osorio Hurtado; James J Cai; Xiuren Zhang; Achim Schnaufer; Jorge Cruz-Reyes
Journal:  RNA       Date:  2020-09-01       Impact factor: 4.942

10.  Diverse telomeres in trypanosomatids.

Authors:  Ester Poláková; Kristína Záhonová; Amanda T S Albanaz; Anzhelika Butenko; Julius Lukeš; Vyacheslav Yurchenko
Journal:  Parasitology       Date:  2021-02-22       Impact factor: 3.234

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.