Literature DB >> 26304125

Differential Editosome Protein Function between Life Cycle Stages of Trypanosoma brucei.

Suzanne M McDermott1, Xuemin Guo1, Jason Carnes1, Kenneth Stuart2.   

Abstract

Uridine insertion and deletion RNA editing generates functional mitochondrial mRNAs in Trypanosoma brucei. The mRNAs are differentially edited in bloodstream form (BF) and procyclic form (PF) life cycle stages, and this correlates with the differential utilization of glycolysis and oxidative phosphorylation between the stages. The mechanism that controls this differential editing is unknown. Editing is catalyzed by multiprotein ∼20S editosomes that contain endonuclease, 3'-terminal uridylyltransferase, exonuclease, and ligase activities. These editosomes also contain KREPB5 and KREPA3 proteins, which have no functional catalytic motifs, but they are essential for parasite viability, editing, and editosome integrity in BF cells. We show here that repression of KREPB5 or KREPA3 is also lethal in PF, but the effects on editosome structure differ from those in BF. In addition, we found that point mutations in KREPB5 or KREPA3 differentially affect cell growth, editosome integrity, and RNA editing between BF and PF stages. These results indicate that the functions of KREPB5 and KREPA3 editosome proteins are adjusted between the life cycle stages. This implies that these proteins are involved in the processes that control differential editing and that the 20S editosomes differ between the life cycle stages.
© 2015 by The American Society for Biochemistry and Molecular Biology, Inc.

Entities:  

Keywords:  RNA editing; Trypanosoma brucei; developmental regulation; differential editing; editosome; mitochondria; protein complex; protein domain; protein-protein interaction

Mesh:

Substances:

Year:  2015        PMID: 26304125      PMCID: PMC4599000          DOI: 10.1074/jbc.M115.669432

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  73 in total

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Authors:  E Hendriks; F J van Deursen; J Wilson; M Sarkar; M Timms; K R Matthews
Journal:  Biochem Soc Trans       Date:  2000-10       Impact factor: 5.407

2.  Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method.

Authors:  K J Livak; T D Schmittgen
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Review 3.  Unique aspects of mitochondrial biogenesis in trypanosomatids.

Authors:  A Schneider
Journal:  Int J Parasitol       Date:  2001-11       Impact factor: 3.981

4.  Patterns and plasticity in RNA-protein interactions enable recruitment of multiple proteins through a single site.

Authors:  Cary T Valley; Douglas F Porter; Chen Qiu; Zachary T Campbell; Traci M Tanaka Hall; Marvin Wickens
Journal:  Proc Natl Acad Sci U S A       Date:  2012-03-30       Impact factor: 11.205

Review 5.  Complex management: RNA editing in trypanosomes.

Authors:  Kenneth D Stuart; Achim Schnaufer; Nancy Lewis Ernst; Aswini K Panigrahi
Journal:  Trends Biochem Sci       Date:  2005-02       Impact factor: 13.807

6.  Quantitation of RNA editing substrates, products and potential intermediates: implications for developmental regulation.

Authors:  G R Riley; P J Myler; K Stuart
Journal:  Nucleic Acids Res       Date:  1995-02-25       Impact factor: 16.971

Review 7.  The structure and replication of kinetoplast DNA.

Authors:  T A Shapiro; P T Englund
Journal:  Annu Rev Microbiol       Date:  1995       Impact factor: 15.500

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Authors:  P D Zamore; J R Williamson; R Lehmann
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9.  TbMP42, a protein component of the RNA editing complex in African trypanosomes, has endo-exoribonuclease activity.

Authors:  Michael Brecht; Moritz Niemann; Elke Schlüter; Ulrich F Müller; Ken Stuart; H Ulrich Göringer
Journal:  Mol Cell       Date:  2005-03-04       Impact factor: 17.970

10.  Architecture of the trypanosome RNA editing accessory complex, MRB1.

Authors:  Michelle L Ammerman; Kurtis M Downey; Hassan Hashimi; John C Fisk; Danielle L Tomasello; Drahomíra Faktorová; Lucie Kafková; Tony King; Julius Lukes; Laurie K Read
Journal:  Nucleic Acids Res       Date:  2012-03-06       Impact factor: 16.971

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  12 in total

1.  The Architecture of Trypanosoma brucei editosomes.

Authors:  Suzanne M McDermott; Jie Luo; Jason Carnes; Jeff A Ranish; Kenneth Stuart
Journal:  Proc Natl Acad Sci U S A       Date:  2016-10-05       Impact factor: 11.205

2.  Ribosome-associated pentatricopeptide repeat proteins function as translational activators in mitochondria of trypanosomes.

Authors:  Inna Aphasizheva; Dmitri A Maslov; Yu Qian; Lan Huang; Qi Wang; Catherine E Costello; Ruslan Aphasizhev
Journal:  Mol Microbiol       Date:  2016-01-20       Impact factor: 3.501

3.  Identification by Random Mutagenesis of Functional Domains in KREPB5 That Differentially Affect RNA Editing between Life Cycle Stages of Trypanosoma brucei.

Authors:  Suzanne M McDermott; Jason Carnes; Kenneth Stuart
Journal:  Mol Cell Biol       Date:  2015-09-14       Impact factor: 4.272

Review 4.  Lexis and Grammar of Mitochondrial RNA Processing in Trypanosomes.

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Journal:  Trends Parasitol       Date:  2020-02-28

Review 5.  Dynamic RNA holo-editosomes with subcomplex variants: Insights into the control of trypanosome editing.

Authors:  Jorge Cruz-Reyes; Blaine H M Mooers; Pawan K Doharey; Joshua Meehan; Shelly Gulati
Journal:  Wiley Interdiscip Rev RNA       Date:  2018-08-12       Impact factor: 9.957

6.  High-throughput sequencing of partially edited trypanosome mRNAs reveals barriers to editing progression and evidence for alternative editing.

Authors:  Rachel M Simpson; Andrew E Bruno; Jonathan E Bard; Michael J Buck; Laurie K Read
Journal:  RNA       Date:  2016-02-23       Impact factor: 4.942

7.  RNase III Domain of KREPB9 and KREPB10 Association with Editosomes in Trypanosoma brucei.

Authors:  Jason Carnes; Suzanne M McDermott; Kenneth Stuart
Journal:  mSphere       Date:  2018-01-17       Impact factor: 4.389

8.  The essential functions of KREPB4 are developmentally distinct and required for endonuclease association with editosomes.

Authors:  Suzanne M McDermott; Kenneth Stuart
Journal:  RNA       Date:  2017-08-11       Impact factor: 4.942

9.  In vivo cleavage specificity of Trypanosoma brucei editosome endonucleases.

Authors:  Jason Carnes; Suzanne McDermott; Atashi Anupama; Brian G Oliver; D Noah Sather; Kenneth Stuart
Journal:  Nucleic Acids Res       Date:  2017-05-05       Impact factor: 16.971

10.  Developmental regulation of edited CYb and COIII mitochondrial mRNAs is achieved by distinct mechanisms in Trypanosoma brucei.

Authors:  Joseph T Smith; Eva Doleželová; Brianna Tylec; Jonathan E Bard; Runpu Chen; Yijun Sun; Alena Zíková; Laurie K Read
Journal:  Nucleic Acids Res       Date:  2020-09-04       Impact factor: 16.971

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