Literature DB >> 12554877

A 100-kD complex of two RNA-binding proteins from mitochondria of Leishmania tarentolae catalyzes RNA annealing and interacts with several RNA editing components.

Ruslan Aphasizhev1, Inna Aphasizheva, Robert E Nelson, Larry Simpson.   

Abstract

A stable 100-kD complex from mitochondria of Leishmania tarentolae containing two RNA-binding proteins, Ltp26 and Ltp28, was identified by cross-linking to unpaired 4-thiouridine nucleotides in a partially duplex RNA substrate. The genes were cloned and expressed and the complex was reconstituted from recombinant proteins in the absence of RNA or additional factors. The Ltp26 and Ltp28 proteins are homologs of gBP27 and gBP29 from Crithidia fasciculata and gBP25 and gBP21 from Trypanosoma brucei, respectively. The purified Ltp26/Ltp28 complex, the individual recombinant proteins, and the reconstituted complex are each capable of catalyzing the annealing of complementary RNAs, as was previously shown for gBP21 from T. brucei. A high-molecular-weight RNP complex consisting of the Ltp26/Ltp28 complex and several 55-60-kD proteins together with guide RNA could be purified from mitochondrial extract of L. tarentolae transfected with Ltp28-TAP. This complex also interacted in a less stable manner with the RNA ligase-containing L-complex and with the 3' TUTase. The Ltp26/Ltp28 RNP complex is a candidate for catalyzing the annealing of guide RNA and pre-edited mRNA in the initial step of RNA editing.

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Year:  2003        PMID: 12554877      PMCID: PMC1370371          DOI: 10.1261/rna.2134303

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  40 in total

1.  RNA ligase and its involvement in guide RNA/mRNA chimera formation. Evidence for a cleavage-ligation mechanism of Trypanosoma brucei mRNA editing.

Authors:  R Sabatini; S L Hajduk
Journal:  J Biol Chem       Date:  1995-03-31       Impact factor: 5.157

2.  Complexes from Trypanosoma brucei that exhibit deletion editing and other editing-associated properties.

Authors:  R A Corell; L K Read; G R Riley; J K Nellissery; T E Allen; M L Kable; M D Wachal; S D Seiwert; P J Myler; K D Stuart
Journal:  Mol Cell Biol       Date:  1996-04       Impact factor: 4.272

3.  Guide RNA-directed uridine insertion RNA editing in vitro.

Authors:  E M Byrne; G J Connell; L Simpson
Journal:  EMBO J       Date:  1996-12-02       Impact factor: 11.598

4.  Characterization of two nuclear-encoded protein components of mitochondrial ribonucleoprotein complexes from Leishmania tarentolae.

Authors:  F Bringaud; M Peris; K H Zen; L Simpson
Journal:  Mol Biochem Parasitol       Date:  1995-04       Impact factor: 1.759

5.  Direct visualization of uridylate deletion in vitro suggests a mechanism for kinetoplastid RNA editing.

Authors:  S D Seiwert; S Heidmann; K Stuart
Journal:  Cell       Date:  1996-03-22       Impact factor: 41.582

6.  Site-specific crosslinks of yeast U6 snRNA to the pre-mRNA near the 5' splice site.

Authors:  C H Kim; J Abelson
Journal:  RNA       Date:  1996-10       Impact factor: 4.942

7.  Different Trypanosoma brucei guide RNA molecules associate with an identical complement of mitochondrial proteins in vitro.

Authors:  J Köller; G Nörskau; A S Paul; K Stuart; H U Göringer
Journal:  Nucleic Acids Res       Date:  1994-06-11       Impact factor: 16.971

8.  Identification by UV cross-linking of oligo(U)-binding proteins in mitochondria of the insect trypanosomatid Crithidia fasciculata.

Authors:  P Leegwater; D Speijer; R Benne
Journal:  Eur J Biochem       Date:  1995-02-01

9.  Native mRNA editing complexes from Trypanosoma brucei mitochondria.

Authors:  V W Pollard; M E Harris; S L Hajduk
Journal:  EMBO J       Date:  1992-12       Impact factor: 11.598

10.  RNA annealing activities in HeLa nuclei.

Authors:  D S Portman; G Dreyfuss
Journal:  EMBO J       Date:  1994-01-01       Impact factor: 11.598

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  68 in total

Review 1.  Mitochondrial proteins and complexes in Leishmania and Trypanosoma involved in U-insertion/deletion RNA editing.

Authors:  Larry Simpson; Ruslan Aphasizhev; Guanghan Gao; Xuedong Kang
Journal:  RNA       Date:  2004-02       Impact factor: 4.942

2.  Isolation of a U-insertion/deletion editing complex from Leishmania tarentolae mitochondria.

Authors:  Ruslan Aphasizhev; Inna Aphasizheva; Robert E Nelson; Guanghan Gao; Agda M Simpson; Xuedong Kang; Arnold M Falick; Sandro Sbicego; Larry Simpson
Journal:  EMBO J       Date:  2003-02-17       Impact factor: 11.598

3.  A trypanosomal pentatricopeptide repeat protein stabilizes the mitochondrial mRNAs of cytochrome oxidase subunits 1 and 2.

Authors:  Mascha Pusnik; André Schneider
Journal:  Eukaryot Cell       Date:  2011-11-04

4.  Trypanosoma brucei 20 S editosomes have one RNA substrate-binding site and execute RNA unwinding activity.

Authors:  Cordula Böhm; Venkata Subbaraju Katari; Michael Brecht; H Ulrich Göringer
Journal:  J Biol Chem       Date:  2012-06-01       Impact factor: 5.157

5.  TbRGG2 facilitates kinetoplastid RNA editing initiation and progression past intrinsic pause sites.

Authors:  Michelle L Ammerman; Vladimir Presnyak; John C Fisk; Bardees M Foda; Laurie K Read
Journal:  RNA       Date:  2010-09-20       Impact factor: 4.942

Review 6.  Unexplained complexity of the mitochondrial genome and transcriptome in kinetoplastid flagellates.

Authors:  Julius Lukes; Hassan Hashimi; Alena Zíková
Journal:  Curr Genet       Date:  2005-11-04       Impact factor: 3.886

7.  Interactions of mRNAs and gRNAs involved in trypanosome mitochondrial RNA editing: structure probing of a gRNA bound to its cognate mRNA.

Authors:  Laura E Yu; Donna J Koslowsky
Journal:  RNA       Date:  2006-04-17       Impact factor: 4.942

8.  KREPA4, an RNA binding protein essential for editosome integrity and survival of Trypanosoma brucei.

Authors:  Reza Salavati; Nancy Lewis Ernst; Jeff O'Rear; Troy Gilliam; Salvador Tarun; Kenneth Stuart
Journal:  RNA       Date:  2006-04-06       Impact factor: 4.942

9.  Manual classification strategies in the ECOD database.

Authors:  Hua Cheng; Yuxing Liao; R Dustin Schaeffer; Nick V Grishin
Journal:  Proteins       Date:  2015-05-08

10.  Guide RNA-binding complex from mitochondria of trypanosomatids.

Authors:  James Weng; Inna Aphasizheva; Ronald D Etheridge; Lan Huang; Xiaorong Wang; Arnold M Falick; Ruslan Aphasizhev
Journal:  Mol Cell       Date:  2008-10-24       Impact factor: 17.970

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