Literature DB >> 21441597

RNA interference and heterochromatin assembly.

Tom Volpe1, Robert A Martienssen.   

Abstract

In most eukaryotes, histone and DNA modifications are responsible for the silencing of genes integrated in heterochromatic sequences, as well as the silencing of pericentromeric repeats and transposable elements themselves. But the mechanisms that guide these modifications to heterochromatin during the cell cycle have been elusive. RNA interference takes advantage of heterochromatic transcription to process small RNAs and recruit enzymes required for both histone and DNA modifications, and is one such mechanism that has been identified. The processes are best understood in fission yeast and plants, but recent work in mammalian cells, especially in the germline, suggests these mechanisms may be highly conserved.

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Year:  2011        PMID: 21441597      PMCID: PMC3181039          DOI: 10.1101/cshperspect.a003731

Source DB:  PubMed          Journal:  Cold Spring Harb Perspect Biol        ISSN: 1943-0264            Impact factor:   10.005


  93 in total

Review 1.  The Argonaute family: tentacles that reach into RNAi, developmental control, stem cell maintenance, and tumorigenesis.

Authors:  Michelle A Carmell; Zhenyu Xuan; Michael Q Zhang; Gregory J Hannon
Journal:  Genes Dev       Date:  2002-11-01       Impact factor: 11.361

Review 2.  The role of RNA interference in heterochromatic silencing.

Authors:  Zachary Lippman; Rob Martienssen
Journal:  Nature       Date:  2004-09-16       Impact factor: 49.962

3.  A germ cell specific gene of the ARGONAUTE family is essential for the progression of premeiotic mitosis and meiosis during sporogenesis in rice.

Authors:  Ken-Ichi Nonomura; Akane Morohoshi; Mutsuko Nakano; Mitsugu Eiguchi; Akio Miyao; Hirohiko Hirochika; Nori Kurata
Journal:  Plant Cell       Date:  2007-08-03       Impact factor: 11.277

4.  Conserved ribonuclease, Eri1, negatively regulates heterochromatin assembly in fission yeast.

Authors:  Tetsushi Iida; Rika Kawaguchi; Jun-ichi Nakayama
Journal:  Curr Biol       Date:  2006-06-22       Impact factor: 10.834

Review 5.  Epigenetics: heterochromatin meets RNAi.

Authors:  Ingela Djupedal; Karl Ekwall
Journal:  Cell Res       Date:  2009-03       Impact factor: 25.617

Review 6.  Coordinated chromatin control: structural and functional linkage of DNA and histone methylation.

Authors:  Xiaodong Cheng; Robert M Blumenthal
Journal:  Biochemistry       Date:  2010-04-13       Impact factor: 3.162

7.  Analysis of a piwi-related gene implicates small RNAs in genome rearrangement in tetrahymena.

Authors:  Kazufumi Mochizuki; Noah A Fine; Toshitaka Fujisawa; Martin A Gorovsky
Journal:  Cell       Date:  2002-09-20       Impact factor: 41.582

8.  Nuclear retention of fission yeast dicer is a prerequisite for RNAi-mediated heterochromatin assembly.

Authors:  Stephan Emmerth; Heiko Schober; Dimos Gaidatzis; Tim Roloff; Kirsten Jacobeit; Marc Bühler
Journal:  Dev Cell       Date:  2010-01-19       Impact factor: 12.270

9.  An RNA-dependent RNA polymerase formed by TERT and the RMRP RNA.

Authors:  Yoshiko Maida; Mami Yasukawa; Miho Furuuchi; Timo Lassmann; Richard Possemato; Naoko Okamoto; Vivi Kasim; Yoshihide Hayashizaki; William C Hahn; Kenkichi Masutomi
Journal:  Nature       Date:  2009-08-23       Impact factor: 49.962

10.  Hairpin RNA induces secondary small interfering RNA synthesis and silencing in trans in fission yeast.

Authors:  Femke Simmer; Alessia Buscaino; Isabelle C Kos-Braun; Alexander Kagansky; Abdelhalim Boukaba; Takeshi Urano; Alastair R W Kerr; Robin C Allshire
Journal:  EMBO Rep       Date:  2010-01-08       Impact factor: 8.807

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  26 in total

1.  Vigilin protein Vgl1 is required for heterochromatin-mediated gene silencing in Schizosaccharomyces pombe.

Authors:  Zeenat Farooq; Ehsaan Abdullah; Shahid Banday; Shabir Ahmad Ganai; Romana Rashid; Arjamand Mushtaq; Samia Rashid; Mohammad Altaf
Journal:  J Biol Chem       Date:  2019-09-25       Impact factor: 5.157

2.  The RNA worlds in context.

Authors:  Thomas R Cech
Journal:  Cold Spring Harb Perspect Biol       Date:  2012-07-01       Impact factor: 10.005

3.  Dynamic regulation of chromatin topology and transcription by inverted repeat-derived small RNAs in sunflower.

Authors:  Delfina Gagliardi; Damian A Cambiagno; Agustin L Arce; Ariel H Tomassi; Jorge I Giacomelli; Federico D Ariel; Pablo A Manavella
Journal:  Proc Natl Acad Sci U S A       Date:  2019-08-13       Impact factor: 11.205

Review 4.  RNA interference pathways in fungi: mechanisms and functions.

Authors:  Shwu-Shin Chang; Zhenyu Zhang; Yi Liu
Journal:  Annu Rev Microbiol       Date:  2012-06-28       Impact factor: 15.500

5.  Deciphering the three-domain architecture in schlafens and the structures and roles of human schlafen12 and serpinB12 in transcriptional regulation.

Authors:  Jiaxing Chen; Leslie A Kuhn
Journal:  J Mol Graph Model       Date:  2019-04-09       Impact factor: 2.518

Review 6.  ChIP-ping the branches of the tree: functional genomics and the evolution of eukaryotic gene regulation.

Authors:  Georgi K Marinov; Anshul Kundaje
Journal:  Brief Funct Genomics       Date:  2018-03-01       Impact factor: 4.241

Review 7.  Multiple roles for small RNAs during plant reproduction.

Authors:  Frédéric Van Ex; Yannick Jacob; Robert A Martienssen
Journal:  Curr Opin Plant Biol       Date:  2011-07-30       Impact factor: 7.834

8.  Argonaute proteins couple chromatin silencing to alternative splicing.

Authors:  Maya Ameyar-Zazoua; Christophe Rachez; Mouloud Souidi; Philippe Robin; Lauriane Fritsch; Robert Young; Nadya Morozova; Romain Fenouil; Nicolas Descostes; Jean-Christophe Andrau; Jacques Mathieu; Ali Hamiche; Slimane Ait-Si-Ali; Christian Muchardt; Eric Batsché; Annick Harel-Bellan
Journal:  Nat Struct Mol Biol       Date:  2012-09-09       Impact factor: 15.369

Review 9.  Are all repeats created equal? Understanding DNA repeats at an individual level.

Authors:  Jinpu Yang; Fei Li
Journal:  Curr Genet       Date:  2016-06-03       Impact factor: 3.886

10.  Histone demethylase JARID1C inactivation triggers genomic instability in sporadic renal cancer.

Authors:  Beatrice Rondinelli; Dalia Rosano; Elena Antonini; Michela Frenquelli; Laura Montanini; DaChuan Huang; Simona Segalla; Kosuke Yoshihara; Samir B Amin; Dejan Lazarevic; Bin Tean The; Roel G W Verhaak; P Andrew Futreal; Luciano Di Croce; Lynda Chin; Davide Cittaro; Giovanni Tonon
Journal:  J Clin Invest       Date:  2015-11-09       Impact factor: 14.808

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