Literature DB >> 22746336

RNA interference pathways in fungi: mechanisms and functions.

Shwu-Shin Chang1, Zhenyu Zhang, Yi Liu.   

Abstract

RNA interference (RNAi) is a conserved eukaryotic gene regulatory mechanism that uses small noncoding RNAs to mediate posttranscriptional/transcriptional gene silencing. The fission yeast Schizosaccharomyces pombe and the filamentous fungus Neurospora crassa have served as important model systems for RNAi research. Studies on these two organisms and other fungi have contributed significantly to our understanding of the mechanisms and functions of RNAi in eukaryotes. In addition, surprisingly diverse RNAi-mediated processes and small RNA biogenesis pathways have been discovered in fungi. In this review, we give an overview of different fungal RNAi pathways with a focus on their mechanisms and functions.

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Year:  2012        PMID: 22746336      PMCID: PMC4617789          DOI: 10.1146/annurev-micro-092611-150138

Source DB:  PubMed          Journal:  Annu Rev Microbiol        ISSN: 0066-4227            Impact factor:   15.500


  113 in total

1.  miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii.

Authors:  Attila Molnár; Frank Schwach; David J Studholme; Eva C Thuenemann; David C Baulcombe
Journal:  Nature       Date:  2007-05-30       Impact factor: 49.962

Review 2.  Virus-derived siRNAs and piRNAs in immunity and pathogenesis.

Authors:  Shou-Wei Ding; Rui Lu
Journal:  Curr Opin Virol       Date:  2011-12       Impact factor: 7.090

3.  Nuclear retention of fission yeast dicer is a prerequisite for RNAi-mediated heterochromatin assembly.

Authors:  Stephan Emmerth; Heiko Schober; Dimos Gaidatzis; Tim Roloff; Kirsten Jacobeit; Marc Bühler
Journal:  Dev Cell       Date:  2010-01-19       Impact factor: 12.270

4.  Posttranscriptional gene silencing in Neurospora by a RecQ DNA helicase.

Authors:  C Cogoni; G Macino
Journal:  Science       Date:  1999-12-17       Impact factor: 47.728

5.  Hypovirus papain-like protease p29 functions in trans to enhance viral double-stranded RNA accumulation and vertical transmission.

Authors:  Nobuhiro Suzuki; Kazuyuki Maruyama; Miho Moriyama; Donald L Nuss
Journal:  J Virol       Date:  2003-11       Impact factor: 5.103

6.  qiRNA is a new type of small interfering RNA induced by DNA damage.

Authors:  Heng-Chi Lee; Shwu-Shin Chang; Swati Choudhary; Antti P Aalto; Mekhala Maiti; Dennis H Bamford; Yi Liu
Journal:  Nature       Date:  2009-05-14       Impact factor: 49.962

7.  A chromodomain protein, Chp1, is required for the establishment of heterochromatin in fission yeast.

Authors:  Mahito Sadaie; Tetsushi Iida; Takeshi Urano; Jun-Ichi Nakayama
Journal:  EMBO J       Date:  2004-09-16       Impact factor: 11.598

Review 8.  Chromosome fragile sites.

Authors:  Sandra G Durkin; Thomas W Glover
Journal:  Annu Rev Genet       Date:  2007       Impact factor: 16.830

9.  SAD-3, a Putative Helicase Required for Meiotic Silencing by Unpaired DNA, Interacts with Other Components of the Silencing Machinery.

Authors:  Thomas M Hammond; Hua Xiao; Erin C Boone; Tony D Perdue; Patricia J Pukkila; Patrick K T Shiu
Journal:  G3 (Bethesda)       Date:  2011-10-01       Impact factor: 3.154

10.  RNAi promotes heterochromatic silencing through replication-coupled release of RNA Pol II.

Authors:  Mikel Zaratiegui; Stephane E Castel; Danielle V Irvine; Anna Kloc; Jie Ren; Fei Li; Elisa de Castro; Laura Marín; An-Yun Chang; Derek Goto; W Zacheus Cande; Francisco Antequera; Benoit Arcangioli; Robert A Martienssen
Journal:  Nature       Date:  2011-10-16       Impact factor: 49.962

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  86 in total

Review 1.  Nuclear Noncoding RNAs and Genome Stability.

Authors:  Jasbeer S Khanduja; Isabel A Calvo; Richard I Joh; Ian T Hill; Mo Motamedi
Journal:  Mol Cell       Date:  2016-07-07       Impact factor: 17.970

Review 2.  New perspectives on the diversification of the RNA interference system: insights from comparative genomics and small RNA sequencing.

Authors:  Alexander Maxwell Burroughs; Yoshinari Ando; L Aravind
Journal:  Wiley Interdiscip Rev RNA       Date:  2013-12-05       Impact factor: 9.957

Review 3.  RNAi function, diversity, and loss in the fungal kingdom.

Authors:  R Blake Billmyre; Silvia Calo; Marianna Feretzaki; Xuying Wang; Joseph Heitman
Journal:  Chromosome Res       Date:  2013-12       Impact factor: 5.239

Review 4.  Regulation of microRNA biogenesis.

Authors:  Minju Ha; V Narry Kim
Journal:  Nat Rev Mol Cell Biol       Date:  2014-07-16       Impact factor: 94.444

Review 5.  RNA-induced initiation of transcriptional silencing (RITS) complex structure and function.

Authors:  Sonali Bhattacharjee; Benjamin Roche; Robert A Martienssen
Journal:  RNA Biol       Date:  2019-06-18       Impact factor: 4.652

Review 6.  The HCPro from the Potyviridae family: an enviable multitasking Helper Component that every virus would like to have.

Authors:  Adrián A Valli; Araiz Gallo; Bernardo Rodamilans; Juan José López-Moya; Juan Antonio García
Journal:  Mol Plant Pathol       Date:  2017-05-26       Impact factor: 5.663

7.  Differential Contribution of RNA Interference Components in Response to Distinct Fusarium graminearum Virus Infections.

Authors:  Jisuk Yu; Kyung-Mi Lee; Won Kyong Cho; Ju Yeon Park; Kook-Hyung Kim
Journal:  J Virol       Date:  2018-04-13       Impact factor: 5.103

8.  Homologous recombination as a mechanism to recognize repetitive DNA sequences in an RNAi pathway.

Authors:  Zhenyu Zhang; Shwu-Shin Chang; Zhenying Zhang; Zhihong Xue; Hanxing Zhang; Shaojie Li; Yi Liu
Journal:  Genes Dev       Date:  2013-01-15       Impact factor: 11.361

Review 9.  Repeat-Induced Point Mutation and Other Genome Defense Mechanisms in Fungi.

Authors:  Eugene Gladyshev
Journal:  Microbiol Spectr       Date:  2017-07

Review 10.  Recognizing the enemy within: licensing RNA-guided genome defense.

Authors:  Phillip A Dumesic; Hiten D Madhani
Journal:  Trends Biochem Sci       Date:  2013-11-23       Impact factor: 13.807

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