Literature DB >> 21431196

Electrostatic interactions in biological DNA-related systems.

A G Cherstvy1.   

Abstract

In this perspective article, we focus on recent developments in the theory of charge effects in biological DNA-related systems. The electrostatic effects on different levels of DNA organization are considered, including the DNA-DNA interactions, DNA complexation with cationic lipid membranes, DNA condensates and DNA-dense cholesteric phases, protein-DNA recognition, DNA wrapping in nucleosomes, and inter-nucleosomal interactions. For these systems, we develop a theoretical framework to describe the physical-chemical mechanisms of structure formation and anticipate some biological consequences. General biophysical principles of DNA compaction in chromatin fibers and DNA spooling inside viral capsids are discussed in the end, with emphasis on electrostatic aspects.

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Year:  2011        PMID: 21431196     DOI: 10.1039/c0cp02796k

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  29 in total

1.  Theoretical assessment of the oligolysine model for ionic interactions in protein-DNA complexes.

Authors:  Marcia O Fenley; Cristina Russo; Gerald S Manning
Journal:  J Phys Chem B       Date:  2011-07-26       Impact factor: 2.991

2.  Structure-driven homology pairing of chromatin fibers: the role of electrostatics and protein-induced bridging.

Authors:  A G Cherstvy; V B Teif
Journal:  J Biol Phys       Date:  2013-01-17       Impact factor: 1.365

3.  Open-Boundary Molecular Dynamics of a DNA Molecule in a Hybrid Explicit/Implicit Salt Solution.

Authors:  Julija Zavadlav; Jurij Sablić; Rudolf Podgornik; Matej Praprotnik
Journal:  Biophys J       Date:  2018-04-09       Impact factor: 4.033

4.  DNA-peptide complexes: Regulation of interferon production.

Authors:  William M Gelbart
Journal:  Nat Mater       Date:  2015-07       Impact factor: 43.841

5.  Divalent Ion-Mediated DNA-DNA Interactions: A Comparative Study of Triplex and Duplex.

Authors:  Zhong-Liang Zhang; Yuan-Yan Wu; Kun Xi; Jian-Ping Sang; Zhi-Jie Tan
Journal:  Biophys J       Date:  2017-08-08       Impact factor: 4.033

6.  Mechanisms of protein binding to DNA: statistical interactions are important.

Authors:  Anatoly B Kolomeisky
Journal:  Biophys J       Date:  2013-03-05       Impact factor: 4.033

7.  Helical structure determines different susceptibilities of dsDNA, dsRNA, and tsDNA to counterion-induced condensation.

Authors:  Alexei A Kornyshev; Sergey Leikin
Journal:  Biophys J       Date:  2013-05-07       Impact factor: 4.033

8.  Direct measurement of the dielectric polarization properties of DNA.

Authors:  Ana Cuervo; Pablo D Dans; José L Carrascosa; Modesto Orozco; Gabriel Gomila; Laura Fumagalli
Journal:  Proc Natl Acad Sci U S A       Date:  2014-08-18       Impact factor: 11.205

9.  The energy components of stacked chromatin layers explain the morphology, dimensions and mechanical properties of metaphase chromosomes.

Authors:  Joan-Ramon Daban
Journal:  J R Soc Interface       Date:  2014-01-08       Impact factor: 4.118

10.  Global analysis of the ground-state wrapping conformation of a charged polymer on an oppositely charged nano-sphere.

Authors:  Hoda Boroudjerdi; Ali Naji; A Naji; R Netz
Journal:  Eur Phys J E Soft Matter       Date:  2014-03-31       Impact factor: 1.890

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