Literature DB >> 23473478

Mechanisms of protein binding to DNA: statistical interactions are important.

Anatoly B Kolomeisky1.   

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Year:  2013        PMID： 23473478      PMCID： PMC3870815          DOI： 10.1016/j.bpj.2013.01.039

Source DB:  PubMed          Journal:  Biophys J        ISSN： 0006-3495            Impact factor:   4.033


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  10 in total

Review 1.  Physics of protein-DNA interactions: mechanisms of facilitated target search.

Authors:  Anatoly B Kolomeisky
Journal:  Phys Chem Chem Phys       Date:  2010-11-29       Impact factor: 3.676

2.  Genome-scale identification of nucleosome positions in S. cerevisiae.

Authors:  Guo-Cheng Yuan; Yuen-Jong Liu; Michael F Dion; Michael D Slack; Lani F Wu; Steven J Altschuler; Oliver J Rando
Journal:  Science       Date:  2005-06-16       Impact factor: 47.728

3.  Protein--DNA interactions: reaching and recognizing the targets.

Authors:  A G Cherstvy; A B Kolomeisky; A A Kornyshev
Journal:  J Phys Chem B       Date:  2008-03-22       Impact factor: 2.991

4.  Electrostatic interactions in biological DNA-related systems.

Authors:  A G Cherstvy
Journal:  Phys Chem Chem Phys       Date:  2011-03-23       Impact factor: 3.676

5.  DNA sequence correlations shape nonspecific transcription factor-DNA binding affinity.

Authors:  Itamar Sela; David B Lukatsky
Journal:  Biophys J       Date:  2011-07-06       Impact factor: 4.033

6.  Genome-wide organization of eukaryotic preinitiation complex is influenced by nonconsensus protein-DNA binding.

Authors:  Ariel Afek; David B Lukatsky
Journal:  Biophys J       Date:  2013-03-05       Impact factor: 4.033

7.  On the specificity of DNA-protein interactions.

Authors:  P H von Hippel; O G Berg
Journal:  Proc Natl Acad Sci U S A       Date:  1986-03       Impact factor: 11.205

8.  Non-specific DNA binding of genome regulating proteins as a biological control mechanism: I. The lac operon: equilibrium aspects.

Authors:  P H von Hippel; A Revzin; C A Gross; A C Wang
Journal:  Proc Natl Acad Sci U S A       Date:  1974-12       Impact factor: 11.205

9.  Diffusion-driven mechanisms of protein translocation on nucleic acids. 1. Models and theory.

Authors:  O G Berg; R B Winter; P H von Hippel
Journal:  Biochemistry       Date:  1981-11-24       Impact factor: 3.162

10.  Genome-wide structure and organization of eukaryotic pre-initiation complexes.

Authors:  Ho Sung Rhee; B Franklin Pugh
Journal:  Nature       Date:  2012-01-18       Impact factor: 49.962
  10 in total
  1 in total

1.  Optimal Length of Conformational Transition Region in Protein Search for Targets on DNA.

Authors:  Maria P Kochugaeva; Alexander M Berezhkovskii; Anatoly B Kolomeisky
Journal:  J Phys Chem Lett       Date:  2017-08-15       Impact factor: 6.475
  1 in total

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