Literature DB >> 34028761

Plastid Genomes of Flowering Plants: Essential Principles.

Tracey A Ruhlman1, Robert K Jansen2.   

Abstract

The plastid genome (plastome ) has proved a valuable source of data for evaluating evolutionary relationships among angiosperms. Through basic and applied approaches, plastid transformation technology offers the potential to understand and improve plant productivity, providing food, fiber, energy, and medicines to meet the needs of a burgeoning global population. The growing genomic resources available to both phylogenetic and biotechnological investigations is allowing novel insights and expanding the scope of plastome research to encompass new species. In this chapter, we present an overview of some of the seminal and contemporary research that has contributed to our current understanding of plastome evolution and attempt to highlight the relationship between evolutionary mechanisms and the tools of plastid genetic engineering.

Entities:  

Keywords:  Angiosperm; DNA recombination; Genome evolution; Inheritance; Intergenic region; Inverted repeat; Phylogeny; Plastome; Replication and repair

Year:  2021        PMID: 34028761     DOI: 10.1007/978-1-0716-1472-3_1

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  241 in total

Review 1.  Endosymbiotic gene transfer: organelle genomes forge eukaryotic chromosomes.

Authors:  Jeremy N Timmis; Michael A Ayliffe; Chun Y Huang; William Martin
Journal:  Nat Rev Genet       Date:  2004-02       Impact factor: 53.242

2.  High-frequency gene transfer from the chloroplast genome to the nucleus.

Authors:  Sandra Stegemann; Stefanie Hartmann; Stephanie Ruf; Ralph Bock
Journal:  Proc Natl Acad Sci U S A       Date:  2003-06-19       Impact factor: 11.205

3.  The plastid clpP1 protease gene is essential for plant development.

Authors:  Hiroshi Kuroda; Pal Maliga
Journal:  Nature       Date:  2003-09-04       Impact factor: 49.962

4.  Evolutionary analysis of Arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus.

Authors:  William Martin; Tamas Rujan; Erik Richly; Andrea Hansen; Sabine Cornelsen; Thomas Lins; Dario Leister; Bettina Stoebe; Masami Hasegawa; David Penny
Journal:  Proc Natl Acad Sci U S A       Date:  2002-09-06       Impact factor: 11.205

Review 5.  Multi-subunit acetyl-CoA carboxylases.

Authors:  John E Cronan; Grover L Waldrop
Journal:  Prog Lipid Res       Date:  2002-09       Impact factor: 16.195

6.  The tobacco plastid accD gene is essential and is required for leaf development.

Authors:  Vasumathi Kode; Elisabeth A Mudd; Siriluck Iamtham; Anil Day
Journal:  Plant J       Date:  2005-10       Impact factor: 6.417

7.  Introducing an RNA editing requirement into a plastid-localised transgene reduces but does not eliminate functional gene transfer to the nucleus.

Authors:  Anna E Sheppard; Panagiotis Madesis; Andrew H Lloyd; Anil Day; Michael A Ayliffe; Jeremy N Timmis
Journal:  Plant Mol Biol       Date:  2011-03-15       Impact factor: 4.076

8.  Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns.

Authors:  Robert K Jansen; Zhengqiu Cai; Linda A Raubeson; Henry Daniell; Claude W Depamphilis; James Leebens-Mack; Kai F Müller; Mary Guisinger-Bellian; Rosemarie C Haberle; Anne K Hansen; Timothy W Chumley; Seung-Bum Lee; Rhiannon Peery; Joel R McNeal; Jennifer V Kuehl; Jeffrey L Boore
Journal:  Proc Natl Acad Sci U S A       Date:  2007-11-28       Impact factor: 11.205

9.  Evolution of reduced and compact chloroplast genomes (cpDNAs) in gnetophytes: selection toward a lower-cost strategy.

Authors:  Chung-Shien Wu; Yu-Ting Lai; Ching-Ping Lin; Ya-Nan Wang; Shu-Miaw Chaw
Journal:  Mol Phylogenet Evol       Date:  2009-01-07       Impact factor: 4.286

10.  Complete plastid genome sequences of Drimys, Liriodendron, and Piper: implications for the phylogenetic relationships of magnoliids.

Authors:  Zhengqiu Cai; Cynthia Penaflor; Jennifer V Kuehl; James Leebens-Mack; John E Carlson; Claude W dePamphilis; Jeffrey L Boore; Robert K Jansen
Journal:  BMC Evol Biol       Date:  2006-10-04       Impact factor: 3.260

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  5 in total

1.  Comparative Analysis of the Complete Chloroplast Genomes of Nine Paphiopedilum Species.

Authors:  Yin Sun; Peishan Zou; Nannan Jiang; Yifu Fang; Guofeng Liu
Journal:  Front Genet       Date:  2022-02-04       Impact factor: 4.599

2.  Plastome structure of 8 Calanthe s.l. species (Orchidaceae): comparative genomics, phylogenetic analysis.

Authors:  Consolata Nanjala; Vincent Okelo Wanga; Wyclif Odago; Elizabeth Syowai Mutinda; Emmanuel Nyongesa Waswa; Millicent Akinyi Oulo; Elijah Mbandi Mkala; Josiah Kuja; Jia-Xin Yang; Xiang Dong; Guang-Wan Hu; Qing-Feng Wang
Journal:  BMC Plant Biol       Date:  2022-08-03       Impact factor: 5.260

3.  Characterization and Comparative Analysis of Chloroplast Genomes in Five Uncaria Species Endemic to China.

Authors:  Min-Min Chen; Miao Zhang; Zong-Suo Liang; Qiu-Ling He
Journal:  Int J Mol Sci       Date:  2022-10-01       Impact factor: 6.208

4.  Plastid Phylogenomic Analysis of Tordylieae Tribe (Apiaceae, Apioideae).

Authors:  Tahir Samigullin; Maria Logacheva; Elena Terentieva; Galina Degtjareva; Michael Pimenov; Carmen Valiejo-Roman
Journal:  Plants (Basel)       Date:  2022-03-07

5.  Gene loss, genome rearrangement, and accelerated substitution rates in plastid genome of Hypericum ascyron (Hypericaceae).

Authors:  Sivagami-Jean Claude; Seongjun Park; SeonJoo Park
Journal:  BMC Plant Biol       Date:  2022-03-23       Impact factor: 4.215

  5 in total

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