Literature DB >> 21398402

P-body components, Dhh1 and Pat1, are involved in tRNA nuclear-cytoplasmic dynamics.

Rebecca L Hurto1, Anita K Hopper.   

Abstract

The nuclear-cytoplasmic distribution of tRNA depends on the balance between tRNA nuclear export/re-export and retrograde tRNA nuclear import in Saccharomyces cerevisiae. The distribution of tRNA is sensitive to nutrient availability as cells deprived of various nutrients exhibit tRNA nuclear accumulation. Starvation induces numerous events that result in translational repression and P-body formation. This study investigated the possible coordination of these responses with tRNA nuclear-cytoplasmic distribution. Dhh1 and Pat1 function in parallel to promote translation repression and P-body formation in response to starvation. Loss of both, Dhh1 and Pat1, results in a failure to repress translation and to induce P-body formation in response to glucose starvation. This study reports that nutrient deprived dhh1 pat1 cells also fail to accumulate tRNA within nuclei. Conversely, inhibition of translation initiation and induction of P-body formation by overproduction of Dhh1 or Pat1 cause tRNA nuclear accumulation in nutrient-replete conditions. Also, loss of the mRNA decapping activator, Lsm1, causes tRNA nuclear accumulation. However, the coordination between P-body formation, translation repression, and tRNA distribution is limited to the early part of the P-body formation/translation repression pathway as loss of mRNA decapping or 5' to 3' degradation does not influence tRNA nuclear-cytoplasmic dynamics. The data provide the first link between P-body formation/translation initiation and tRNA nuclear-cytoplasmic dynamics. The current model is that Dhh1 and Pat1 function in parallel to promote starvation-induced tRNA nuclear accumulation.

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Year:  2011        PMID: 21398402      PMCID: PMC3078740          DOI: 10.1261/rna.2558511

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  47 in total

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2.  Decapping and decay of messenger RNA occur in cytoplasmic processing bodies.

Authors:  Ujwal Sheth; Roy Parker
Journal:  Science       Date:  2003-05-02       Impact factor: 47.728

3.  A second set of loxP marker cassettes for Cre-mediated multiple gene knockouts in budding yeast.

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Journal:  Nucleic Acids Res       Date:  2002-03-15       Impact factor: 16.971

4.  Nuclear tRNA aminoacylation and its role in nuclear export of endogenous tRNAs in Saccharomyces cerevisiae.

Authors:  S Sarkar; A K Azad; A K Hopper
Journal:  Proc Natl Acad Sci U S A       Date:  1999-12-07       Impact factor: 11.205

5.  TOR controls translation initiation and early G1 progression in yeast.

Authors:  N C Barbet; U Schneider; S B Helliwell; I Stansfield; M F Tuite; M N Hall
Journal:  Mol Biol Cell       Date:  1996-01       Impact factor: 4.138

6.  Exportin-5-mediated nuclear export of eukaryotic elongation factor 1A and tRNA.

Authors:  Angelo Calado; Nathalie Treichel; Eva-Christina Müller; Albrecht Otto; Ulrike Kutay
Journal:  EMBO J       Date:  2002-11-15       Impact factor: 11.598

7.  Exp5 exports eEF1A via tRNA from nuclei and synergizes with other transport pathways to confine translation to the cytoplasm.

Authors:  Markus T Bohnsack; Kathrin Regener; Blanche Schwappach; Rainer Saffrich; Efrosyni Paraskeva; Enno Hartmann; Dirk Görlich
Journal:  EMBO J       Date:  2002-11-15       Impact factor: 11.598

8.  Functions of eIF3 downstream of 48S assembly impact AUG recognition and GCN4 translational control.

Authors:  Klaus H Nielsen; Béla Szamecz; Leos Valásek; Antonina Jivotovskaya; Byung-Sik Shin; Alan G Hinnebusch
Journal:  EMBO J       Date:  2004-02-19       Impact factor: 11.598

9.  PAUSED encodes the Arabidopsis exportin-t ortholog.

Authors:  Christine A Hunter; Milo J Aukerman; Hui Sun; Maria Fokina; R Scott Poethig
Journal:  Plant Physiol       Date:  2003-08       Impact factor: 8.340

10.  Possibility of cytoplasmic pre-tRNA splicing: the yeast tRNA splicing endonuclease mainly localizes on the mitochondria.

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Journal:  Mol Biol Cell       Date:  2003-05-03       Impact factor: 4.138

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  14 in total

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Review 2.  Quality Control Pathways for Nucleus-Encoded Eukaryotic tRNA Biosynthesis and Subcellular Trafficking.

Authors:  Anita K Hopper; Hsiao-Yun Huang
Journal:  Mol Cell Biol       Date:  2015-04-06       Impact factor: 4.272

Review 3.  Transfer RNA travels from the cytoplasm to organelles.

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Journal:  Wiley Interdiscip Rev RNA       Date:  2011-07-11       Impact factor: 9.957

4.  Retrograde transfer RNA nuclear import provides a new level of tRNA quality control in Saccharomyces cerevisiae.

Authors:  Emily B Kramer; Anita K Hopper
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-02       Impact factor: 11.205

Review 5.  tRNA dynamics between the nucleus, cytoplasm and mitochondrial surface: Location, location, location.

Authors:  Kunal Chatterjee; Regina T Nostramo; Yao Wan; Anita K Hopper
Journal:  Biochim Biophys Acta Gene Regul Mech       Date:  2017-11-28       Impact factor: 4.490

Review 6.  Transfer RNA post-transcriptional processing, turnover, and subcellular dynamics in the yeast Saccharomyces cerevisiae.

Authors:  Anita K Hopper
Journal:  Genetics       Date:  2013-05       Impact factor: 4.562

7.  Genome-wide investigation of the role of the tRNA nuclear-cytoplasmic trafficking pathway in regulation of the yeast Saccharomyces cerevisiae transcriptome and proteome.

Authors:  Hui-Yi Chu; Anita K Hopper
Journal:  Mol Cell Biol       Date:  2013-08-26       Impact factor: 4.272

8.  Ty3 Retrotransposon Hijacks Mating Yeast RNA Processing Bodies to Infect New Genomes.

Authors:  Virginia Bilanchone; Kristina Clemens; Robyn Kaake; Anthony R Dawson; Dina Matheos; Kunio Nagashima; Parth Sitlani; Kurt Patterson; Ivan Chang; Lan Huang; Suzanne Sandmeyer
Journal:  PLoS Genet       Date:  2015-09-30       Impact factor: 5.917

Review 9.  Composition and function of P bodies in Arabidopsis thaliana.

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Journal:  Front Plant Sci       Date:  2014-05-14       Impact factor: 5.753

10.  Pat1 contributes to the RNA binding activity of the Lsm1-7-Pat1 complex.

Authors:  Ashis Chowdhury; Swathi Kalurupalle; Sundaresan Tharun
Journal:  RNA       Date:  2014-07-17       Impact factor: 4.942

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