Literature DB >> 25848089

Quality Control Pathways for Nucleus-Encoded Eukaryotic tRNA Biosynthesis and Subcellular Trafficking.

Anita K Hopper1, Hsiao-Yun Huang2.   

Abstract

tRNAs perform an essential role in translating the genetic code. They are long-lived RNAs that are generated via numerous posttranscriptional steps. Eukaryotic cells have evolved numerous layers of quality control mechanisms to ensure that the tRNAs are appropriately structured, processed, and modified. We describe the known tRNA quality control processes that check tRNAs and correct or destroy aberrant tRNAs. These mechanisms employ two types of exonucleases, CCA end addition, tRNA nuclear aminoacylation, and tRNA subcellular traffic. We arrange these processes in order of the steps that occur from generation of precursor tRNAs by RNA polymerase (Pol) III transcription to end maturation and modification in the nucleus to splicing and additional modifications in the cytoplasm. Finally, we discuss the tRNA retrograde pathway, which allows tRNA reimport into the nucleus for degradation or repair.
Copyright © 2015, American Society for Microbiology. All Rights Reserved.

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Year:  2015        PMID: 25848089      PMCID: PMC4438251          DOI: 10.1128/MCB.00131-15

Source DB:  PubMed          Journal:  Mol Cell Biol        ISSN: 0270-7306            Impact factor:   4.272


  76 in total

1.  tRNAs marked with CCACCA are targeted for degradation.

Authors:  Jeremy E Wilusz; Joseph M Whipple; Eric M Phizicky; Phillip A Sharp
Journal:  Science       Date:  2011-11-11       Impact factor: 47.728

2.  Retrograde nuclear accumulation of cytoplasmic tRNA in rat hepatoma cells in response to amino acid deprivation.

Authors:  Hussam H Shaheen; Rick L Horetsky; Scot R Kimball; Athulaprabha Murthi; Leonard S Jefferson; Anita K Hopper
Journal:  Proc Natl Acad Sci U S A       Date:  2007-05-14       Impact factor: 11.205

3.  HSPC117 is the essential subunit of a human tRNA splicing ligase complex.

Authors:  Johannes Popow; Markus Englert; Stefan Weitzer; Alexander Schleiffer; Beata Mierzwa; Karl Mechtler; Simon Trowitzsch; Cindy L Will; Reinhard Lührmann; Dieter Söll; Javier Martinez
Journal:  Science       Date:  2011-02-11       Impact factor: 47.728

4.  Nuclear surveillance and degradation of hypomodified initiator tRNAMet in S. cerevisiae.

Authors:  Sujatha Kadaba; Anna Krueger; Tamyra Trice; Annette M Krecic; Alan G Hinnebusch; James Anderson
Journal:  Genes Dev       Date:  2004-05-14       Impact factor: 11.361

5.  The role of exportin-t in selective nuclear export of mature tRNAs.

Authors:  G J Arts; S Kuersten; P Romby; B Ehresmann; I W Mattaj
Journal:  EMBO J       Date:  1998-12-15       Impact factor: 11.598

6.  Degradation of several hypomodified mature tRNA species in Saccharomyces cerevisiae is mediated by Met22 and the 5'-3' exonucleases Rat1 and Xrn1.

Authors:  Irina Chernyakov; Joseph M Whipple; Lakmal Kotelawala; Elizabeth J Grayhack; Eric M Phizicky
Journal:  Genes Dev       Date:  2008-04-28       Impact factor: 11.361

7.  Exclusive use of trans-editing domains prevents proline mistranslation.

Authors:  Oscar Vargas-Rodriguez; Karin Musier-Forsyth
Journal:  J Biol Chem       Date:  2013-04-05       Impact factor: 5.157

Review 8.  tRNA modifications regulate translation during cellular stress.

Authors:  Chen Gu; Thomas J Begley; Peter C Dedon
Journal:  FEBS Lett       Date:  2014-10-07       Impact factor: 4.124

Review 9.  RNA degradation in Saccharomyces cerevisae.

Authors:  Roy Parker
Journal:  Genetics       Date:  2012-07       Impact factor: 4.562

10.  In vivo biochemical analyses reveal distinct roles of β-importins and eEF1A in tRNA subcellular traffic.

Authors:  Hsiao-Yun Huang; Anita K Hopper
Journal:  Genes Dev       Date:  2015-04-01       Impact factor: 11.361

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  21 in total

1.  Translation regulation in skin cancer from a tRNA point of view.

Authors:  Katerina Grafanaki; Dimitrios Anastasakis; George Kyriakopoulos; Ilias Skeparnias; Sophia Georgiou; Constantinos Stathopoulos
Journal:  Epigenomics       Date:  2018-12-19       Impact factor: 4.778

Review 2.  mRNA Editing, Processing and Quality Control in Caenorhabditis elegans.

Authors:  Joshua A Arribere; Hidehito Kuroyanagi; Heather A Hundley
Journal:  Genetics       Date:  2020-07       Impact factor: 4.562

3.  Dis3l2-Mediated Decay Is a Quality Control Pathway for Noncoding RNAs.

Authors:  Mehdi Pirouz; Peng Du; Marzia Munafò; Richard I Gregory
Journal:  Cell Rep       Date:  2016-08-04       Impact factor: 9.423

4.  Substrate selectivity by the exonuclease Rrp6p.

Authors:  Armend Axhemi; Elizabeth V Wasmuth; Christopher D Lima; Eckhard Jankowsky
Journal:  Proc Natl Acad Sci U S A       Date:  2019-12-26       Impact factor: 11.205

Review 5.  The tRNA regulome in neurodevelopmental and neuropsychiatric disease.

Authors:  Jennifer Blaze; Schahram Akbarian
Journal:  Mol Psychiatry       Date:  2022-05-03       Impact factor: 15.992

6.  Experimental paradigms revisited: oxidative stress-induced tRNA fragmentation does not correlate with stress granule formation but is associated with delayed cell death.

Authors:  Nasim Sanadgol; Lisa König; Aleksej Drino; Michaela Jovic; Matthias R Schaefer
Journal:  Nucleic Acids Res       Date:  2022-06-14       Impact factor: 19.160

7.  An extensive allelic series of Drosophila kae1 mutants reveals diverse and tissue-specific requirements for t6A biogenesis.

Authors:  Ching-Jung Lin; Peter Smibert; Xiaoyu Zhao; Jennifer F Hu; Johnny Ramroop; Stefanie M Kellner; Matthew A Benton; Shubha Govind; Peter C Dedon; Rolf Sternglanz; Eric C Lai
Journal:  RNA       Date:  2015-10-29       Impact factor: 4.942

8.  The poly(A)-binding protein Nab2 functions in RNA polymerase III transcription.

Authors:  L Maximilian Reuter; Dominik M Meinel; Katja Sträßer
Journal:  Genes Dev       Date:  2015-07-15       Impact factor: 11.361

Review 9.  The Diversity of Ribonuclease P: Protein and RNA Catalysts with Analogous Biological Functions.

Authors:  Bradley P Klemm; Nancy Wu; Yu Chen; Xin Liu; Kipchumba J Kaitany; Michael J Howard; Carol A Fierke
Journal:  Biomolecules       Date:  2016-05-13

Review 10.  Therapeutic promise of engineered nonsense suppressor tRNAs.

Authors:  Joseph J Porter; Christina S Heil; John D Lueck
Journal:  Wiley Interdiscip Rev RNA       Date:  2021-02-10       Impact factor: 9.957

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