Literature DB >> 21361169

A new bias field correction method combining N3 and FCM for improved segmentation of breast density on MRI.

Muqing Lin1, Siwa Chan, Jeon-Hor Chen, Daniel Chang, Ke Nie, Shih-Ting Chen, Cheng-Ju Lin, Tzu-Ching Shih, Orhan Nalcioglu, Min-Ying Su.   

Abstract

PURPOSE: Quantitative breast density is known as a strong risk factor associated with the development of breast cancer. Measurement of breast density based on three-dimensional breast MRI may provide very useful information. One important step for quantitative analysis of breast density on MRI is the correction of field inhomogeneity to allow an accurate segmentation of the fibroglandular tissue (dense tissue). A new bias field correction method by combining the nonparametric nonuniformity normalization (N3) algorithm and fuzzy-C-means (FCM)-based inhomogeneity correction algorithm is developed in this work.
METHODS: The analysis is performed on non-fat-sat T1-weighted images acquired using a 1.5 T MRI scanner. A total of 60 breasts from 30 healthy volunteers was analyzed. N3 is known as a robust correction method, but it cannot correct a strong bias field on a large area. FCM-based algorithm can correct the bias field on a large area, but it may change the tissue contrast and affect the segmentation quality. The proposed algorithm applies N3 first, followed by FCM, and then the generated bias field is smoothed using Gaussian kernal and B-spline surface fitting to minimize the problem of mistakenly changed tissue contrast. The segmentation results based on the N3+FCM corrected images were compared to the N3 and FCM alone corrected images and another method, coherent local intensity clustering (CLIC), corrected images. The segmentation quality based on different correction methods were evaluated by a radiologist and ranked.
RESULTS: The authors demonstrated that the iterative N3+FCM correction method brightens the signal intensity of fatty tissues and that separates the histogram peaks between the fibroglandular and fatty tissues to allow an accurate segmentation between them. In the first reading session, the radiologist found (N3+FCM > N3 > FCM) ranking in 17 breasts, (N3+FCM > N3 = FCM) ranking in 7 breasts, (N3+FCM = N3 > FCM) in 32 breasts, (N3+FCM = N3 = FCM) in 2 breasts, and (N3 > N3+FCM > FCM) in 2 breasts. The results of the second reading session were similar. The performance in each pairwise Wilcoxon signed-rank test is significant, showing N3+FCM superior to both N3 and FCM, and N3 superior to FCM. The performance of the new N3+FCM algorithm was comparable to that of CLIC, showing equivalent quality in 57/60 breasts.
CONCLUSIONS: Choosing an appropriate bias field correction method is a very important preprocessing step to allow an accurate segmentation of fibroglandular tissues based on breast MRI for quantitative measurement of breast density. The proposed algorithm combining N3+FCM and CLIC both yield satisfactory results.

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Year:  2011        PMID: 21361169      PMCID: PMC3017578          DOI: 10.1118/1.3519869

Source DB:  PubMed          Journal:  Med Phys        ISSN: 0094-2405            Impact factor:   4.071


  26 in total

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Journal:  IEEE Trans Med Imaging       Date:  2001-12       Impact factor: 10.048

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4.  A method of radio-frequency inhomogeneity correction for brain tissue segmentation in MRI.

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5.  Automated segmentation of multispectral brain MR images.

Authors:  Anders H Andersen; Zhiming Zhang; Malcolm J Avison; Don M Gash
Journal:  J Neurosci Methods       Date:  2002-12-31       Impact factor: 2.390

6.  A nonparametric method for automatic correction of intensity nonuniformity in MRI data.

Authors:  J G Sled; A P Zijdenbos; A C Evans
Journal:  IEEE Trans Med Imaging       Date:  1998-02       Impact factor: 10.048

7.  Quantitative analysis of breast parenchymal patterns using 3D fibroglandular tissues segmented based on MRI.

Authors:  Ke Nie; Daniel Chang; Jeon-Hor Chen; Chieh-Chih Hsu; Orhan Nalcioglu; Min-Ying Su
Journal:  Med Phys       Date:  2010-01       Impact factor: 4.071

8.  Correction for intensity falloff in surface coil magnetic resonance imaging.

Authors:  W W Brey; P A Narayana
Journal:  Med Phys       Date:  1988 Mar-Apr       Impact factor: 4.071

9.  A pilot study of compositional analysis of the breast and estimation of breast mammographic density using three-dimensional T1-weighted magnetic resonance imaging.

Authors:  Michael Khazen; Ruth M L Warren; Caroline R M Boggis; Emilie C Bryant; Sadie Reed; Iqbal Warsi; Linda J Pointon; Gek E Kwan-Lim; Deborah Thompson; Ros Eeles; Doug Easton; D Gareth Evans; Martin O Leach
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2008-09       Impact factor: 4.254

10.  Magnetic resonance imaging for secondary assessment of breast density in a high-risk cohort.

Authors:  Catherine Klifa; Julio Carballido-Gamio; Lisa Wilmes; Anne Laprie; John Shepherd; Jessica Gibbs; Bo Fan; Susan Noworolski; Nola Hylton
Journal:  Magn Reson Imaging       Date:  2009-07-23       Impact factor: 2.546

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  25 in total

1.  Automated fibroglandular tissue segmentation and volumetric density estimation in breast MRI using an atlas-aided fuzzy C-means method.

Authors:  Shandong Wu; Susan P Weinstein; Emily F Conant; Despina Kontos
Journal:  Med Phys       Date:  2013-12       Impact factor: 4.071

2.  Breast density quantification using magnetic resonance imaging (MRI) with bias field correction: a postmortem study.

Authors:  Huanjun Ding; Travis Johnson; Muqing Lin; Huy Q Le; Justin L Ducote; Min-Ying Su; Sabee Molloi
Journal:  Med Phys       Date:  2013-12       Impact factor: 4.071

3.  Template-based automatic breast segmentation on MRI by excluding the chest region.

Authors:  Muqing Lin; Jeon-Hor Chen; Xiaoyong Wang; Siwa Chan; Siping Chen; Min-Ying Su
Journal:  Med Phys       Date:  2013-12       Impact factor: 4.071

4.  Consistency of breast density measured from the same women in four different MR scanners.

Authors:  Jeon-Hor Chen; Siwa Chan; Yi-Jui Liu; Dah-Cherng Yeh; Chih-Kai Chang; Li-Kuang Chen; Wei-Fan Pan; Chih-Chen Kuo; Muqing Lin; Daniel H E Chang; Peter T Fwu; Min-Ying Su
Journal:  Med Phys       Date:  2012-08       Impact factor: 4.071

5.  Menstrual cycle-related fluctuations in breast density measured by using three-dimensional MR imaging.

Authors:  Siwa Chan; Min-Ying L Su; Fu-Ju Lei; Jia-Pei Wu; Muqing Lin; Orhan Nalcioglu; Stephen A Feig; Jeon-Hor Chen
Journal:  Radiology       Date:  2011-08-30       Impact factor: 11.105

6.  Impact of positional difference on the measurement of breast density using MRI.

Authors:  Jeon-Hor Chen; Siwa Chan; Yi-Ting Tang; Jia Shen Hon; Po-Chuan Tseng; Angela T Cheriyan; Nikita Rakesh Shah; Dah-Cherng Yeh; San-Kan Lee; Wen-Pin Chen; Christine E McLaren; Min-Ying Su
Journal:  Med Phys       Date:  2015-05       Impact factor: 4.071

7.  Automatic Breast and Fibroglandular Tissue Segmentation in Breast MRI Using Deep Learning by a Fully-Convolutional Residual Neural Network U-Net.

Authors:  Yang Zhang; Jeon-Hor Chen; Kai-Ting Chang; Vivian Youngjean Park; Min Jung Kim; Siwa Chan; Peter Chang; Daniel Chow; Alex Luk; Tiffany Kwong; Min-Ying Su
Journal:  Acad Radiol       Date:  2019-01-31       Impact factor: 3.173

8.  Association between breast cancer, breast density, and body adiposity evaluated by MRI.

Authors:  Wenlian Zhu; Peng Huang; Katarzyna J Macura; Dmitri Artemov
Journal:  Eur Radiol       Date:  2015-10-21       Impact factor: 5.315

9.  3D multi-parametric breast MRI segmentation using hierarchical support vector machine with coil sensitivity correction.

Authors:  Yi Wang; Glen Morrell; Marta E Heibrun; Allison Payne; Dennis L Parker
Journal:  Acad Radiol       Date:  2012-10-23       Impact factor: 3.173

10.  Atlas-based probabilistic fibroglandular tissue segmentation in breast MRI.

Authors:  Shandong Wu; Susan Weinstein; Despina Kontos
Journal:  Med Image Comput Comput Assist Interv       Date:  2012
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